Wall clock time and date at job start Tue Mar 31 2020 02:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86808 * 119.99872 * 2 1 4 4 H 1.48494 * 109.47104 * 240.00039 * 3 2 1 5 5 H 1.48495 * 109.46967 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46792 * 120.00072 * 3 2 1 7 7 C 1.38814 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00329 * 197.01818 * 7 2 1 9 9 N 1.36937 * 119.99586 * 17.01369 * 7 2 1 10 10 C 1.47080 * 120.87630 * 206.59018 * 9 7 2 11 11 C 1.53246 * 108.52089 * 231.16223 * 10 9 7 12 12 N 1.46900 * 109.33724 * 306.17614 * 11 10 9 13 13 C 1.38522 * 110.99598 * 187.25460 * 12 11 10 14 14 C 1.40381 * 119.24191 * 180.02562 * 13 12 11 15 15 C 1.36124 * 119.85176 * 179.97438 * 14 13 12 16 16 C 1.41178 * 118.33178 * 359.97438 * 15 14 13 17 17 N 1.33482 * 121.07631 * 179.97438 * 16 15 14 18 18 C 1.31440 * 119.71427 * 179.71176 * 17 16 15 19 19 C 1.39530 * 120.59080 * 0.57560 * 18 17 16 20 20 N 1.31426 * 120.74826 * 359.43737 * 19 18 17 21 21 C 1.33832 * 119.79411 * 0.26342 * 20 19 18 22 22 N 1.31728 * 119.24392 * 359.97438 * 13 12 11 23 23 C 1.46893 * 111.27415 * 63.09886 * 12 11 10 24 24 C 1.47077 * 120.88224 * 26.56680 * 9 7 2 25 25 H 0.96998 * 120.00452 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.63149 * 111.45852 * 10 9 7 27 27 H 1.09003 * 109.63502 * 350.87293 * 10 9 7 28 28 H 1.08995 * 109.49604 * 186.21491 * 11 10 9 29 29 H 1.09000 * 109.51265 * 66.14219 * 11 10 9 30 30 H 1.08007 * 120.07690 * 359.96849 * 14 13 12 31 31 H 1.08002 * 120.83981 * 180.02562 * 15 14 13 32 32 H 1.08000 * 119.70414 * 180.26875 * 18 17 16 33 33 H 1.07998 * 119.62610 * 179.72535 * 19 18 17 34 34 H 1.09008 * 109.49111 * 56.85451 * 23 12 11 35 35 H 1.09004 * 109.49394 * 176.93331 * 23 12 11 36 36 H 1.09002 * 109.62906 * 248.54116 * 24 9 7 37 37 H 1.09000 * 109.62925 * 9.12706 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0548 -1.2227 0.2732 9 7 1.3705 -2.3619 -0.3481 10 6 1.8309 -3.6610 0.1655 11 6 2.0024 -4.6193 -1.0180 12 7 0.7548 -4.6641 -1.7922 13 6 0.8147 -5.6394 -2.7740 14 6 -0.2900 -5.8310 -3.6188 15 6 -0.2444 -6.7856 -4.5881 16 6 0.9298 -7.5597 -4.7113 17 7 1.0336 -8.5107 -5.6422 18 6 2.1414 -9.2117 -5.7367 19 6 3.2056 -8.9788 -4.8649 20 7 3.1257 -8.0480 -3.9406 21 6 2.0105 -7.3168 -3.8279 22 7 1.9074 -6.3652 -2.8943 23 6 0.4400 -3.3517 -2.3723 24 6 0.2046 -2.3415 -1.2443 25 1 -0.4851 0.8400 -0.0004 26 1 1.0920 -4.0635 0.8585 27 1 2.7857 -3.5354 0.6762 28 1 2.2363 -5.6171 -0.6471 29 1 2.8138 -4.2686 -1.6558 30 1 -1.1743 -5.2223 -3.4998 31 1 -1.0849 -6.9462 -5.2470 32 1 2.2268 -9.9782 -6.4928 33 1 4.1070 -9.5671 -4.9537 34 1 1.2732 -3.0183 -2.9911 35 1 -0.4590 -3.4304 -2.9836 36 1 -0.6906 -2.6173 -0.6869 37 1 0.0841 -1.3435 -1.6658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083421601.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:35 Heat of formation + Delta-G solvation = 134.306337 kcal Electronic energy + Delta-G solvation = -21871.472035 eV Core-core repulsion = 18650.659972 eV Total energy + Delta-G solvation = -3220.812063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68451 -39.59399 -37.19021 -35.04833 -34.39006 -32.08875 -31.61989 -30.23582 -29.86599 -26.97480 -25.28912 -24.37195 -23.38539 -22.74879 -21.98799 -19.53126 -19.18497 -18.25826 -17.39877 -16.93911 -15.91007 -15.57085 -15.20016 -14.74487 -14.65707 -14.34317 -13.86464 -13.75528 -13.52482 -13.23787 -13.02327 -12.62715 -12.21370 -11.94987 -11.77738 -11.58123 -11.24088 -10.83829 -10.69441 -10.55778 -10.45489 -10.24612 -9.88600 -9.84248 -9.63319 -9.42049 -8.75876 -8.57976 -8.03217 -6.78807 -5.86392 -3.27660 0.03710 0.36417 1.84580 2.60079 3.35136 3.37461 3.41442 3.43111 3.86113 3.90783 4.03203 4.06333 4.44667 4.57422 4.72963 4.82544 4.99276 5.18691 5.29387 5.34303 5.44387 5.61300 5.70794 5.80079 5.82632 5.99975 6.05602 6.18425 6.24965 6.30953 6.55178 6.73109 6.90684 7.04566 7.23754 7.32073 7.47276 7.49827 7.73271 8.05208 8.34223 9.12242 9.74799 10.32194 11.23121 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.035542 B = 0.003709 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.609483 B = 7548.386653 C = 7848.488249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.596 5.596 10 C 0.144 3.856 11 C 0.053 3.947 12 N -0.463 5.463 13 C 0.383 3.617 14 C -0.159 4.159 15 C -0.020 4.020 16 C -0.002 4.002 17 N -0.406 5.406 18 C 0.043 3.957 19 C 0.105 3.895 20 N -0.428 5.428 21 C 0.298 3.702 22 N -0.512 5.512 23 C 0.037 3.963 24 C 0.176 3.824 25 H 0.256 0.744 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 -15.525 -11.199 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.017 3.983 11 C -0.074 4.074 12 N -0.178 5.178 13 C 0.132 3.868 14 C -0.183 4.183 15 C -0.047 4.047 16 C -0.132 4.132 17 N -0.121 5.121 18 C -0.132 4.132 19 C -0.073 4.073 20 N -0.144 5.144 21 C 0.055 3.945 22 N -0.231 5.231 23 C -0.089 4.089 24 C 0.050 3.950 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.172 0.828 31 H 0.169 0.831 32 H 0.191 0.809 33 H 0.194 0.806 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.591 -15.126 -10.141 18.221 hybrid contribution 0.285 0.661 -0.971 1.209 sum 0.876 -14.465 -11.112 18.262 Atomic orbital electron populations 1.69989 1.05215 1.25793 1.53903 1.25026 0.95336 0.98433 1.00760 0.86337 0.78908 0.83157 0.78201 1.21029 1.21567 1.20803 1.19176 0.92729 0.84627 1.41853 0.91418 1.44140 1.34033 1.01486 1.52210 1.21115 0.98475 0.86181 0.92532 1.22651 0.87481 1.01007 0.96304 1.58843 1.34564 1.06011 1.18381 1.20471 0.87582 0.91890 0.86851 1.21705 1.00085 1.00363 0.96120 1.21122 0.95809 0.91551 0.96180 1.20237 0.97191 0.98709 0.97104 1.68454 1.23971 1.02755 1.16917 1.23917 0.89949 0.99495 0.99879 1.24098 0.99664 0.93459 0.90084 1.68312 1.22898 1.04030 1.19193 1.19770 0.89895 0.93040 0.91749 1.67633 1.23950 1.09103 1.22420 1.23263 1.00150 0.85828 0.99656 1.20956 0.89454 0.96500 0.88133 0.93432 0.95422 0.91734 0.90274 0.93027 0.82806 0.83052 0.80868 0.80645 0.93523 0.90713 0.94924 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.36 11.15 55.49 0.62 -24.74 16 2 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 3 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.84 9.63 -15.06 -0.15 -6.99 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.60 -14.63 3.04 -172.01 -0.52 -15.15 16 10 C 0.14 3.03 6.69 -3.60 -0.02 3.01 16 11 C 0.05 1.01 4.80 -3.70 -0.02 1.00 16 12 N -0.46 -8.32 4.64 -172.83 -0.80 -9.12 16 13 C 0.38 6.32 6.41 -155.58 -1.00 5.33 16 14 C -0.16 -2.08 9.06 -39.54 -0.36 -2.44 16 15 C -0.02 -0.25 10.10 -39.23 -0.40 -0.64 16 16 C 0.00 -0.03 6.60 -84.72 -0.56 -0.59 16 17 N -0.41 -5.07 10.46 -10.75 -0.11 -5.18 16 18 C 0.04 0.40 11.21 -17.24 -0.19 0.20 16 19 C 0.10 1.05 11.21 -17.24 -0.19 0.85 16 20 N -0.43 -6.44 10.55 -12.46 -0.13 -6.57 16 21 C 0.30 4.89 7.60 -157.72 -1.20 3.69 16 22 N -0.51 -9.15 8.66 -11.81 -0.10 -9.25 16 23 C 0.04 0.68 5.41 -3.70 -0.02 0.66 16 24 C 0.18 3.98 5.42 -3.60 -0.02 3.96 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.31 7.95 -51.93 -0.41 0.90 16 28 H 0.08 1.45 7.62 -51.93 -0.40 1.06 16 29 H 0.05 1.05 8.13 -51.93 -0.42 0.62 16 30 H 0.15 1.66 7.10 -52.48 -0.37 1.28 16 31 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.07 1.12 6.57 -51.93 -0.34 0.78 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 2.45 6.12 -51.93 -0.32 2.13 16 LS Contribution 306.76 15.07 4.62 4.62 Total: -1.00 -32.29 306.76 -10.01 -42.30 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.35 Total: -1.17 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -4.21 Total: 8.03 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -1.05 Total: -70.02 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.29 -10.01 -42.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083421601.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.609 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds