Wall clock time and date at job start Tue Mar 31 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34236 * 117.00090 * 2 1 4 4 O 1.20823 * 119.99464 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00098 * 179.97438 * 3 2 1 6 6 N 1.46898 * 109.47104 * 183.62144 * 5 3 2 7 7 C 1.46906 * 110.99482 * 296.25947 * 6 5 3 8 8 C 1.50702 * 109.47169 * 286.20931 * 7 6 5 9 9 O 1.20825 * 120.00010 * 359.77913 * 8 7 6 10 10 O 1.34234 * 119.99794 * 179.78409 * 8 7 6 11 11 C 1.45197 * 116.99887 * 179.97438 * 10 8 7 12 12 C 1.46900 * 111.00182 * 60.21265 * 6 5 3 13 13 C 1.53001 * 109.46926 * 73.85463 * 12 6 5 14 14 C 1.50703 * 115.55088 * 55.13753 * 13 12 6 15 15 H 1.07999 * 119.99538 * 213.00264 * 14 13 12 16 16 C 1.37873 * 119.99757 * 32.72381 * 14 13 12 17 17 N 1.31509 * 120.00394 * 357.49207 * 16 14 13 18 18 Si 1.86802 * 119.99780 * 177.48365 * 16 14 13 19 19 H 1.48499 * 109.46923 * 90.00190 * 18 16 14 20 20 H 1.48496 * 109.47499 * 210.00229 * 18 16 14 21 21 H 1.48499 * 109.47262 * 330.00560 * 18 16 14 22 22 C 1.52997 * 117.49740 * 200.81279 * 13 12 6 23 23 C 1.53000 * 117.49419 * 269.46929 * 13 12 6 24 24 H 1.09000 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47391 * 299.99933 * 1 2 3 26 26 H 1.09002 * 109.47096 * 60.00018 * 1 2 3 27 27 H 1.08998 * 109.47058 * 63.61791 * 5 3 2 28 28 H 1.09006 * 109.47170 * 303.62042 * 5 3 2 29 29 H 1.08993 * 109.47114 * 46.21405 * 7 6 5 30 30 H 1.09004 * 109.46635 * 166.21083 * 7 6 5 31 31 H 1.08998 * 109.47238 * 179.97438 * 11 10 8 32 32 H 1.08999 * 109.47300 * 299.99941 * 11 10 8 33 33 H 1.09001 * 109.46826 * 59.99598 * 11 10 8 34 34 H 1.08997 * 109.47014 * 313.85081 * 12 6 5 35 35 H 1.09000 * 109.46769 * 193.85038 * 12 6 5 36 36 H 0.97005 * 120.00350 * 184.98827 * 17 16 14 37 37 H 1.08999 * 117.49842 * 214.99839 * 22 13 12 38 38 H 1.09001 * 117.49848 * 0.02562 * 22 13 12 39 39 H 1.08995 * 117.50430 * 359.97438 * 23 13 12 40 40 H 1.09006 * 117.49730 * 144.97609 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9829 2.6809 0.0879 7 6 3.5467 3.4336 -1.0958 8 6 4.4034 3.0543 -2.2762 9 8 5.2893 2.2433 -2.1439 10 8 4.1824 3.6174 -3.4744 11 6 5.0464 3.2050 -4.5660 12 6 3.4824 3.3026 1.3212 13 6 4.2895 2.7890 2.5152 14 6 5.7825 2.9683 2.4160 15 1 6.4445 2.2398 2.8604 16 6 6.3032 4.0592 1.7530 17 7 5.4984 4.9170 1.1648 18 14 8.1520 4.3190 1.6904 19 1 8.7071 3.6389 0.4926 20 1 8.4454 5.7727 1.6146 21 1 8.7734 3.7517 2.9140 22 6 3.6540 2.9094 3.9017 23 6 3.7740 1.5388 3.2309 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.9534 0.8377 -0.9198 28 1 3.9586 0.7258 0.8567 29 1 2.5048 3.1982 -1.3124 30 1 3.6454 4.5020 -0.9036 31 1 4.7608 3.7340 -5.4752 32 1 6.0816 3.4398 -4.3186 33 1 4.9451 2.1312 -4.7238 34 1 2.4314 3.0473 1.4561 35 1 3.5871 4.3853 1.2505 36 1 5.8657 5.6438 0.6377 37 1 4.3158 3.1183 4.7422 38 1 2.6607 3.3542 3.9632 39 1 2.8598 1.0825 2.8514 40 1 4.5148 0.8457 3.6297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:39 Heat of formation + Delta-G solvation = -111.914447 kcal Electronic energy + Delta-G solvation = -24491.152709 eV Core-core repulsion = 20887.769289 eV Total energy + Delta-G solvation = -3603.383419 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57869 -39.74985 -37.62344 -36.14570 -35.97232 -34.38409 -32.01300 -29.44344 -28.34071 -26.69039 -26.60299 -25.30427 -22.87234 -21.23836 -20.87750 -19.98053 -18.96750 -17.47892 -17.11563 -16.58720 -16.42000 -16.00951 -15.75211 -15.49232 -14.68498 -14.36551 -14.18891 -13.75886 -13.48420 -13.25418 -12.86160 -12.75439 -12.57418 -11.95303 -11.80007 -11.46589 -11.23161 -11.17305 -11.07349 -10.85751 -10.56073 -10.44817 -10.41685 -10.40845 -10.36542 -9.94677 -9.85052 -9.35549 -8.83823 -8.66009 -8.07775 -7.35721 -5.81061 -3.90868 2.50555 2.79874 3.02010 3.13096 3.39536 3.45701 3.48405 4.51092 4.61583 5.13640 5.18708 5.23731 5.26586 5.27882 5.31944 5.37830 5.58986 5.63448 5.68892 5.77002 5.85568 6.08041 6.14413 6.21405 6.39678 6.55533 6.63924 6.68412 6.78630 6.87931 6.95440 7.12076 7.32533 7.51992 7.81444 7.99510 8.07438 8.18323 8.34907 8.55759 9.03695 9.70567 11.13669 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.009007 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.039351 B = 3108.048259 C = 4946.321242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.366 6.366 3 C 0.426 3.574 4 O -0.509 6.509 5 C 0.057 3.943 6 N -0.441 5.441 7 C 0.057 3.943 8 C 0.457 3.543 9 O -0.488 6.488 10 O -0.370 6.370 11 C 0.037 3.963 12 C 0.094 3.906 13 C 0.062 3.938 14 C -0.470 4.470 15 H 0.055 0.945 16 C 0.087 3.913 17 N -0.878 5.878 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.289 1.289 21 H -0.277 1.277 22 C -0.206 4.206 23 C -0.221 4.221 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.109 0.891 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.018 0.982 35 H 0.126 0.874 36 H 0.255 0.745 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.296 -5.002 -7.580 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.282 6.282 3 C 0.268 3.732 4 O -0.397 6.397 5 C -0.074 4.074 6 N -0.162 5.162 7 C -0.072 4.072 8 C 0.298 3.702 9 O -0.373 6.373 10 O -0.287 6.287 11 C -0.057 4.057 12 C -0.032 4.032 13 C 0.062 3.938 14 C -0.507 4.507 15 H 0.073 0.927 16 C -0.115 4.115 17 N -0.516 5.516 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.202 1.202 22 C -0.245 4.245 23 C -0.259 4.259 24 H 0.113 0.887 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.127 0.873 28 H 0.144 0.856 29 H 0.101 0.899 30 H 0.142 0.858 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.144 0.856 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.686 -4.715 -7.611 11.174 hybrid contribution 0.034 -0.015 -0.173 0.177 sum -6.652 -4.730 -7.784 11.279 Atomic orbital electron populations 1.23151 0.77835 1.02988 1.02138 1.86618 1.22537 1.34971 1.84078 1.26504 0.94356 0.81075 0.71256 1.90570 1.67541 1.35907 1.45722 1.22604 0.82913 0.95404 1.06499 1.61736 1.55540 0.97713 1.01202 1.21807 0.95711 1.02438 0.87198 1.24233 0.83787 0.78620 0.83510 1.90631 1.30798 1.31948 1.83905 1.86511 1.57657 1.65215 1.19308 1.23126 0.94460 1.00580 0.87515 1.22168 0.92169 1.03199 0.85646 1.19045 0.94805 0.92492 0.87507 1.20324 0.88526 1.06875 1.34949 0.92699 1.24724 0.97231 0.95187 0.94336 1.69743 1.33416 1.15784 1.32673 0.86617 0.86203 0.76909 0.78339 1.20668 1.21540 1.20226 1.22979 1.00516 1.00063 1.00942 1.22966 1.01291 0.91811 1.09803 0.88729 0.92198 0.92403 0.87288 0.85586 0.89904 0.85797 0.88761 0.92103 0.92422 0.96423 0.85613 0.93446 0.90356 0.91920 0.92255 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.76 10.57 -39.27 -0.41 -6.17 16 3 C 0.43 7.62 7.07 36.00 0.25 7.88 16 4 O -0.51 -9.86 11.58 -18.75 -0.22 -10.07 16 5 C 0.06 1.08 5.45 -4.98 -0.03 1.05 16 6 N -0.44 -9.47 3.53 -237.52 -0.84 -10.31 16 7 C 0.06 1.12 5.25 -4.97 -0.03 1.09 16 8 C 0.46 8.78 7.67 36.01 0.28 9.05 16 9 O -0.49 -10.52 14.75 -18.75 -0.28 -10.80 16 10 O -0.37 -6.12 10.57 -39.27 -0.41 -6.53 16 11 C 0.04 0.48 10.56 101.05 1.07 1.54 16 12 C 0.09 2.15 3.55 -3.82 -0.01 2.13 16 13 C 0.06 1.50 1.75 -155.66 -0.27 1.22 16 14 C -0.47 -12.50 8.79 -34.44 -0.30 -12.80 16 15 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 16 C 0.09 2.32 5.28 -17.82 -0.09 2.23 16 17 N -0.88 -23.06 9.97 55.43 0.55 -22.50 16 18 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.21 -4.61 9.96 -26.70 -0.27 -4.87 16 23 C -0.22 -4.74 8.46 -26.69 -0.23 -4.97 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 26 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 27 H 0.11 2.00 6.55 -51.93 -0.34 1.66 16 28 H 0.13 2.46 6.33 -51.93 -0.33 2.13 16 29 H 0.08 1.55 5.45 -51.93 -0.28 1.26 16 30 H 0.12 2.49 7.66 -51.93 -0.40 2.09 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 34 H 0.02 0.41 5.31 -51.93 -0.28 0.13 16 35 H 0.13 3.15 5.40 -51.93 -0.28 2.87 16 36 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 37 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 40 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -29.67 330.32 -5.89 -35.56 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.67 Total: 4.42 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 1.44 Total: 5.02 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: -0.29 Total: -32.81 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.32 Total: -33.57 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.67 -5.89 -35.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.352 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds