Wall clock time and date at job start Tue Mar 31 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 116.99854 * 2 1 4 4 O 1.20820 * 120.00177 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99759 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46723 * 180.02562 * 5 3 2 7 7 C 1.37087 * 120.00411 * 275.67046 * 6 5 3 8 8 H 1.08008 * 119.99954 * 41.72777 * 7 6 5 9 9 C 1.38948 * 120.00779 * 221.72693 * 7 6 5 10 10 N 1.31416 * 119.99212 * 357.41023 * 9 7 6 11 11 Si 1.86793 * 120.00557 * 177.41363 * 9 7 6 12 12 H 1.48499 * 109.47151 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47416 * 120.00228 * 11 9 7 14 14 H 1.48511 * 109.46891 * 239.99691 * 11 9 7 15 15 C 1.34781 * 119.99454 * 95.67292 * 6 5 3 16 16 O 1.21292 * 119.99489 * 184.95196 * 15 6 5 17 17 C 1.50695 * 120.00337 * 4.96122 * 15 6 5 18 18 H 1.09002 * 109.46931 * 309.54404 * 17 15 6 19 19 C 1.52997 * 109.47514 * 69.54630 * 17 15 6 20 20 O 1.42903 * 109.47253 * 189.54763 * 17 15 6 21 21 C 1.42898 * 113.99987 * 149.99605 * 20 17 15 22 22 C 1.52999 * 109.47050 * 180.02562 * 21 20 17 23 23 C 1.52997 * 117.52257 * 116.28698 * 22 21 20 24 24 C 1.52993 * 60.00151 * 107.47754 * 23 22 21 25 25 H 1.09004 * 109.46983 * 299.99483 * 1 2 3 26 26 H 1.09000 * 109.47526 * 59.99468 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47222 * 60.00944 * 5 3 2 29 29 H 1.08992 * 109.47363 * 300.00451 * 5 3 2 30 30 H 0.97000 * 119.99637 * 184.54841 * 10 9 7 31 31 H 1.09002 * 109.47139 * 306.86609 * 19 17 15 32 32 H 1.09003 * 109.47188 * 66.86248 * 19 17 15 33 33 H 1.09001 * 109.47408 * 186.85959 * 19 17 15 34 34 H 1.08997 * 109.47387 * 60.00287 * 21 20 17 35 35 H 1.09006 * 109.47274 * 300.00110 * 21 20 17 36 36 H 1.08998 * 115.54881 * 330.58102 * 22 21 20 37 37 H 1.08999 * 117.50174 * 214.97021 * 23 22 21 38 38 H 1.09006 * 117.49877 * 359.97438 * 23 22 21 39 39 H 1.09000 * 117.50375 * 252.50895 * 24 23 22 40 40 H 1.09007 * 117.50081 * 107.49006 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.0629 3.3712 -1.1808 8 1 3.2963 3.2495 -1.9318 9 6 5.1316 4.2287 -1.4118 10 7 6.0373 4.4159 -0.4782 11 14 5.2807 5.1154 -3.0491 12 1 4.1417 4.7360 -3.9231 13 1 5.2628 6.5827 -2.8209 14 1 6.5567 4.7321 -3.7051 15 6 4.2837 3.2925 1.1620 16 8 4.5403 4.4779 1.1736 17 6 4.3031 2.5048 2.4465 18 1 3.3762 1.9387 2.5395 19 6 5.4908 1.5404 2.4357 20 8 4.4270 3.4007 3.5529 21 6 3.8079 2.9320 4.7525 22 6 4.0016 3.9656 5.8638 23 6 2.7489 4.6339 6.4340 24 6 3.5084 3.5976 7.2646 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.9557 0.7811 -0.8909 29 1 3.9564 0.7805 0.8890 30 1 6.7465 5.0637 -0.6135 31 1 5.4620 0.9387 1.5273 32 1 6.4205 2.1087 2.4657 33 1 5.4362 0.8869 3.3064 34 1 4.2626 1.9875 5.0511 35 1 2.7424 2.7829 4.5772 36 1 4.9057 4.5701 5.7912 37 1 2.8288 5.6780 6.7365 38 1 1.7863 4.3375 6.0171 39 1 3.0456 2.6193 7.3944 40 1 4.0882 3.9599 8.1137 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120576723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:53 Heat of formation + Delta-G solvation = -129.215840 kcal Electronic energy + Delta-G solvation = -23726.249208 eV Core-core repulsion = 20122.115544 eV Total energy + Delta-G solvation = -3604.133664 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.58221 -40.42541 -39.06629 -37.56229 -37.29549 -35.87953 -34.13962 -32.09160 -29.98189 -28.03343 -27.72952 -26.82281 -24.42701 -23.26615 -22.27865 -21.75244 -21.13509 -18.70584 -18.65765 -18.07457 -17.85488 -17.37409 -17.07402 -16.65639 -16.40052 -16.18656 -15.59284 -15.17779 -14.97801 -14.53244 -14.47302 -14.24617 -13.67556 -13.55063 -13.34290 -13.23704 -12.92814 -12.88375 -12.59953 -12.54820 -12.42440 -12.30721 -12.02037 -11.93641 -11.73809 -11.61544 -11.39537 -11.21895 -10.91400 -10.51967 -9.82949 -9.21285 -8.00056 -6.03334 1.24475 1.40177 1.43965 1.54256 1.67643 2.24448 2.48138 2.61837 2.90251 3.19177 3.30196 3.78355 3.91180 3.94160 4.00531 4.03872 4.13003 4.20042 4.29818 4.32943 4.35970 4.37810 4.51363 4.55053 4.67772 4.72760 4.73807 4.75138 4.88314 4.98466 5.20351 5.24424 5.29539 5.38368 5.48388 6.10070 6.32878 6.83374 6.99412 7.19463 7.60157 8.38151 8.91875 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.011991 B = 0.006394 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.538428 B = 4377.773619 C = 5992.434558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.440 3.560 4 O -0.535 6.535 5 C 0.104 3.896 6 N -0.459 5.459 7 C -0.344 4.344 8 H 0.074 0.926 9 C -0.007 4.007 10 N -0.846 5.846 11 Si 0.980 3.020 12 H -0.261 1.261 13 H -0.296 1.296 14 H -0.269 1.269 15 C 0.456 3.544 16 O -0.538 6.538 17 C 0.081 3.919 18 H 0.079 0.921 19 C -0.159 4.159 20 O -0.388 6.388 21 C 0.086 3.914 22 C -0.178 4.178 23 C -0.187 4.187 24 C -0.142 4.142 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.140 0.860 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.254 0.746 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.202 -13.153 9.541 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.282 3.718 4 O -0.423 6.423 5 C -0.021 4.021 6 N -0.183 5.183 7 C -0.472 4.472 8 H 0.092 0.908 9 C -0.213 4.213 10 N -0.482 5.482 11 Si 0.805 3.195 12 H -0.184 1.184 13 H -0.222 1.222 14 H -0.194 1.194 15 C 0.244 3.756 16 O -0.413 6.413 17 C 0.020 3.980 18 H 0.097 0.903 19 C -0.216 4.216 20 O -0.307 6.307 21 C 0.009 3.991 22 C -0.197 4.197 23 C -0.224 4.224 24 C -0.178 4.178 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.158 0.842 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.007 -12.004 9.584 16.493 hybrid contribution -0.268 0.993 -0.936 1.391 sum -6.275 -11.011 8.647 15.343 Atomic orbital electron populations 1.23517 0.75437 1.05699 1.01956 1.86507 1.24545 1.32282 1.84008 1.25290 0.93685 0.81334 0.71526 1.90673 1.67676 1.38040 1.45927 1.21572 0.85942 0.86582 1.08025 1.43167 1.62014 1.07977 1.05134 1.19267 1.06040 1.27891 0.94017 0.90800 1.26198 0.94816 0.99625 1.00686 1.70291 1.13159 1.32023 1.32766 0.85085 0.78618 0.77120 0.78668 1.18447 1.22249 1.19375 1.20622 0.82470 0.87944 0.84574 1.90505 1.47707 1.17988 1.85110 1.21929 0.99702 0.90528 0.85852 0.90286 1.22246 0.96921 0.98337 1.04129 1.88045 1.77537 1.45888 1.19217 1.22281 0.96286 0.96888 0.83600 1.22111 0.99754 1.02828 0.94985 1.23141 0.95613 0.99130 1.04513 1.23073 1.02144 1.00422 0.92193 0.92522 0.92897 0.84185 0.84801 0.84359 0.93636 0.89691 0.93513 0.88521 0.90626 0.93450 0.88706 0.88381 0.88788 0.86933 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.78 16 2 O -0.36 -10.06 10.57 -51.42 -0.54 -10.60 16 3 C 0.44 16.20 7.99 71.24 0.57 16.77 16 4 O -0.53 -24.75 16.07 21.98 0.35 -24.39 16 5 C 0.10 3.83 5.34 85.63 0.46 4.28 16 6 N -0.46 -23.41 2.12 -639.59 -1.35 -24.76 16 7 C -0.34 -19.64 9.15 84.04 0.77 -18.87 16 8 H 0.07 4.19 7.83 -2.91 -0.02 4.16 16 9 C -0.01 -0.42 5.02 84.93 0.43 0.01 16 10 N -0.85 -52.67 10.19 21.66 0.22 -52.45 16 11 Si 0.98 46.25 29.56 68.60 2.03 48.28 16 12 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 13 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 15 C 0.46 24.87 6.18 87.65 0.54 25.41 16 16 O -0.54 -35.78 13.48 15.79 0.21 -35.57 16 17 C 0.08 3.35 2.29 29.85 0.07 3.42 16 18 H 0.08 2.81 7.15 -2.39 -0.02 2.79 16 19 C -0.16 -5.24 9.06 71.98 0.65 -4.59 16 20 O -0.39 -16.77 9.54 -130.12 -1.24 -18.01 16 21 C 0.09 2.62 6.03 71.98 0.43 3.06 16 22 C -0.18 -4.97 6.06 -10.80 -0.07 -5.04 16 23 C -0.19 -4.46 10.18 30.59 0.31 -4.15 16 24 C -0.14 -2.67 10.25 30.59 0.31 -2.36 16 25 H 0.06 1.25 8.13 -2.38 -0.02 1.23 16 26 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 27 H 0.14 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.13 4.31 8.09 -2.39 -0.02 4.29 16 29 H 0.14 4.04 4.31 -2.39 -0.01 4.03 16 30 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.08 2.55 5.81 -2.39 -0.01 2.54 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 2.30 8.04 -2.39 -0.02 2.28 16 34 H 0.08 1.85 8.04 -2.39 -0.02 1.83 16 35 H 0.05 1.39 7.82 -2.38 -0.02 1.37 16 36 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.09 2.21 8.03 -2.38 -0.02 2.19 16 39 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -85.36 339.48 6.38 -78.97 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 1.04 Total: 18.82 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 5.67 Total: 19.72 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -1.13 Total: -77.21 kcal Atomic # 8 Polarization: -87.35 SS G_CDS: -1.22 Total: -88.57 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -85.36 6.38 -78.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120576723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.242 kcal (2) G-P(sol) polarization free energy of solvation -85.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds