Wall clock time and date at job start Tue Mar 31 2020 02:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34237 * 117.00230 * 2 1 4 4 O 1.20820 * 119.99521 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00175 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.46998 * 180.02562 * 5 3 2 7 7 C 1.37101 * 119.99785 * 264.08233 * 6 5 3 8 8 H 1.07994 * 120.00132 * 196.60276 * 7 6 5 9 9 C 1.38956 * 119.99923 * 16.60073 * 7 6 5 10 10 N 1.31413 * 119.99915 * 20.79880 * 9 7 6 11 11 Si 1.86799 * 120.00067 * 200.79690 * 9 7 6 12 12 H 1.48504 * 109.46973 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46830 * 120.00126 * 11 9 7 14 14 H 1.48498 * 109.47246 * 240.00341 * 11 9 7 15 15 C 1.34774 * 120.00576 * 84.08281 * 6 5 3 16 16 O 1.21291 * 119.99596 * 0.02562 * 15 6 5 17 17 C 1.50697 * 120.00383 * 179.97438 * 15 6 5 18 18 C 1.52997 * 109.47280 * 179.97438 * 17 15 6 19 19 C 1.53006 * 109.47356 * 179.97438 * 18 17 15 20 20 H 1.09001 * 110.90432 * 57.13017 * 19 18 17 21 21 C 1.55301 * 110.85106 * 180.71677 * 19 18 17 22 22 C 1.54942 * 100.94459 * 152.32403 * 21 19 18 23 23 O 1.43644 * 105.13457 * 323.55814 * 22 21 19 24 24 C 1.43237 * 109.97347 * 24.42623 * 23 22 21 25 25 H 1.08994 * 109.46796 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46926 * 300.00127 * 1 2 3 27 27 H 1.08999 * 109.47139 * 59.99430 * 1 2 3 28 28 H 1.08997 * 109.47107 * 60.00060 * 5 3 2 29 29 H 1.09006 * 109.47144 * 299.99661 * 5 3 2 30 30 H 0.96998 * 120.00254 * 179.97438 * 10 9 7 31 31 H 1.08996 * 109.47229 * 59.99744 * 17 15 6 32 32 H 1.09007 * 109.46908 * 300.00264 * 17 15 6 33 33 H 1.09003 * 109.47165 * 60.00428 * 18 17 15 34 34 H 1.08998 * 109.47289 * 300.00142 * 18 17 15 35 35 H 1.09001 * 111.12267 * 34.40412 * 21 19 18 36 36 H 1.09004 * 111.16005 * 270.26281 * 21 19 18 37 37 H 1.08993 * 110.30986 * 204.64307 * 22 21 19 38 38 H 1.09004 * 110.30741 * 82.46868 * 22 21 19 39 39 H 1.09001 * 109.83119 * 117.80639 * 24 23 22 40 40 H 1.09004 * 109.82843 * 238.77371 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.2929 3.3031 -1.1806 8 1 4.8464 4.2304 -1.1721 9 6 3.8963 2.7418 -2.3882 10 7 2.9077 1.8764 -2.4173 11 14 4.7682 3.2173 -3.9704 12 1 5.8384 4.2017 -3.6691 13 1 5.3686 2.0074 -4.5875 14 1 3.7911 3.8203 -4.9121 15 6 4.0579 3.3594 1.1615 16 8 3.7830 2.8078 2.2061 17 6 4.4857 4.8044 1.1622 18 6 4.4876 5.3350 2.5972 19 6 4.9226 6.8019 2.5981 20 1 4.2724 7.4007 1.9603 21 6 4.9531 7.3686 4.0437 22 6 6.0332 8.4707 3.9049 23 8 7.0056 7.9305 2.9961 24 6 6.3971 6.9380 2.1617 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.9557 0.7810 -0.8908 29 1 3.9564 0.7806 0.8892 30 1 2.6306 1.4848 -3.2603 31 1 3.7908 5.3894 0.5599 32 1 5.4884 4.8866 0.7426 33 1 5.1824 4.7501 3.2000 34 1 3.4848 5.2528 3.0164 35 1 5.2603 6.6052 4.7585 36 1 3.9889 7.7959 4.3193 37 1 6.4919 8.6749 4.8723 38 1 5.5951 9.3801 3.4935 39 1 6.4468 7.2508 1.1187 40 1 6.9096 5.9842 2.2877 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177415788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:54 Heat of formation + Delta-G solvation = -186.686232 kcal Electronic energy + Delta-G solvation = -23399.307394 eV Core-core repulsion = 19792.681626 eV Total energy + Delta-G solvation = -3606.625767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.37331 -40.55304 -39.95847 -37.35420 -36.54995 -35.38520 -33.49209 -31.96243 -30.49550 -29.25849 -27.85213 -26.70307 -25.00306 -23.13831 -22.10162 -21.27022 -20.93101 -18.79182 -18.47459 -18.10917 -17.71376 -17.28269 -17.01599 -16.67875 -16.17473 -16.08925 -15.91895 -15.54761 -14.70081 -14.57761 -14.29400 -14.18420 -13.96989 -13.71881 -13.47667 -13.10069 -12.96490 -12.87299 -12.60696 -12.47237 -12.39581 -12.17927 -12.00849 -11.85787 -11.60023 -11.58949 -11.51749 -11.44870 -10.94720 -10.45362 -10.44135 -9.89037 -8.38484 -5.93323 1.40921 1.50734 1.63099 1.68573 1.79522 2.24336 2.34029 2.85280 3.00759 3.13675 3.54461 3.80227 3.98939 4.16961 4.24963 4.30636 4.33699 4.34370 4.37616 4.39631 4.47653 4.56500 4.68000 4.71816 4.73074 4.82247 4.86738 4.92903 4.99510 5.05484 5.15863 5.29222 5.41104 5.46003 5.62226 5.72991 6.07793 6.33017 7.07263 7.19737 7.48890 7.89851 8.69373 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.004973 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.350137 B = 5628.799248 C = 6999.883806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.487 3.513 4 O -0.538 6.538 5 C 0.152 3.848 6 N -0.443 5.443 7 C -0.351 4.351 8 H 0.120 0.880 9 C -0.005 4.005 10 N -0.899 5.899 11 Si 0.994 3.006 12 H -0.253 1.253 13 H -0.276 1.276 14 H -0.290 1.290 15 C 0.454 3.546 16 O -0.633 6.633 17 C -0.110 4.110 18 C -0.077 4.077 19 C -0.117 4.117 20 H 0.093 0.907 21 C -0.149 4.149 22 C 0.048 3.952 23 O -0.410 6.410 24 C 0.052 3.948 25 H 0.135 0.865 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.271 0.729 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.737 5.280 4.839 7.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.294 6.294 3 C 0.330 3.670 4 O -0.426 6.426 5 C 0.026 3.974 6 N -0.161 5.161 7 C -0.477 4.477 8 H 0.137 0.863 9 C -0.207 4.207 10 N -0.537 5.537 11 Si 0.818 3.182 12 H -0.176 1.176 13 H -0.202 1.202 14 H -0.216 1.216 15 C 0.245 3.755 16 O -0.521 6.521 17 C -0.150 4.150 18 C -0.115 4.115 19 C -0.135 4.135 20 H 0.111 0.889 21 C -0.187 4.187 22 C -0.028 4.028 23 O -0.330 6.330 24 C -0.024 4.024 25 H 0.153 0.847 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.139 0.861 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.494 5.250 5.175 7.782 hybrid contribution -0.648 -0.189 -1.093 1.285 sum 1.845 5.062 4.082 6.759 Atomic orbital electron populations 1.23296 0.76192 1.04894 1.01177 1.86427 1.24140 1.33832 1.85022 1.24117 0.92672 0.80757 0.69475 1.90470 1.67368 1.37717 1.47082 1.20533 0.87042 0.86219 1.03631 1.43719 1.57186 1.08341 1.06856 1.20113 1.34922 1.10341 0.82356 0.86290 1.26111 0.95060 0.96955 1.02575 1.69957 1.24093 1.31295 1.28400 0.84852 0.78152 0.78457 0.76721 1.17599 1.20186 1.21606 1.21132 0.81297 0.90154 0.82905 1.90493 1.57039 1.71624 1.32988 1.21399 1.03246 0.91301 0.99051 1.21144 1.01512 0.94018 0.94872 1.22721 0.96668 0.96199 0.97946 0.88851 1.23326 1.00826 0.98523 0.95975 1.23535 0.89160 0.96174 0.93944 1.88346 1.36639 1.56516 1.51488 1.23283 0.92397 0.91864 0.94844 0.84732 0.93124 0.93612 0.86112 0.89377 0.91889 0.89732 0.88376 0.92150 0.92728 0.90530 0.88342 0.88442 0.91060 0.90671 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 10.56 113.37 1.20 2.49 16 2 O -0.38 -16.41 10.57 -51.48 -0.54 -16.95 16 3 C 0.49 24.69 6.13 71.23 0.44 25.13 16 4 O -0.54 -30.69 15.79 21.98 0.35 -30.35 16 5 C 0.15 7.41 5.14 85.63 0.44 7.85 16 6 N -0.44 -22.15 2.18 -639.62 -1.39 -23.54 16 7 C -0.35 -17.05 9.15 84.04 0.77 -16.28 16 8 H 0.12 5.28 6.55 -2.91 -0.02 5.26 16 9 C -0.01 -0.26 4.90 84.93 0.42 0.15 16 10 N -0.90 -46.37 9.24 21.67 0.20 -46.17 16 11 Si 0.99 38.14 29.60 68.60 2.03 40.17 16 12 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 13 H -0.28 -10.42 7.11 99.48 0.71 -9.72 16 14 H -0.29 -11.40 7.11 99.48 0.71 -10.69 16 15 C 0.45 21.82 7.42 87.66 0.65 22.47 16 16 O -0.63 -33.39 15.66 -3.06 -0.05 -33.44 16 17 C -0.11 -4.12 3.99 29.85 0.12 -4.00 16 18 C -0.08 -2.48 3.89 30.60 0.12 -2.36 16 19 C -0.12 -2.89 3.03 -9.53 -0.03 -2.92 16 20 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 21 C -0.15 -3.06 6.62 32.05 0.21 -2.84 16 22 C 0.05 0.94 7.78 72.65 0.56 1.50 16 23 O -0.41 -10.83 11.36 -148.98 -1.69 -12.52 16 24 C 0.05 1.33 6.57 72.45 0.48 1.81 16 25 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 26 H 0.05 1.71 8.13 -2.38 -0.02 1.70 16 27 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 28 H 0.12 5.86 6.35 -2.39 -0.02 5.85 16 29 H 0.09 4.07 7.60 -2.38 -0.02 4.05 16 30 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 31 H 0.08 3.18 8.10 -2.39 -0.02 3.16 16 32 H 0.10 3.29 7.03 -2.38 -0.02 3.27 16 33 H 0.06 2.02 8.03 -2.39 -0.02 2.00 16 34 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 35 H 0.08 1.63 8.04 -2.39 -0.02 1.61 16 36 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 1.77 7.73 -2.38 -0.02 1.75 16 Total: -1.00 -67.50 331.84 5.30 -62.20 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 1.03 Total: 27.60 kcal Atomic # 6 Polarization: 27.63 SS G_CDS: 5.37 Total: 33.00 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -1.19 Total: -69.71 kcal Atomic # 8 Polarization: -91.32 SS G_CDS: -1.94 Total: -93.25 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -67.50 5.30 -62.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177415788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.490 kcal (2) G-P(sol) polarization free energy of solvation -67.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds