Wall clock time and date at job start Tue Mar 31 2020 02:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99867 * 2 1 4 4 O 1.20829 * 120.00037 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99928 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47286 * 179.97438 * 5 3 2 7 7 C 1.37093 * 120.00168 * 95.12600 * 6 5 3 8 8 H 1.07992 * 120.00306 * 232.10406 * 7 6 5 9 9 C 1.38957 * 119.99832 * 51.83388 * 7 6 5 10 10 N 1.31410 * 119.99701 * 201.66416 * 9 7 6 11 11 Si 1.86798 * 120.00018 * 21.65875 * 9 7 6 12 12 H 1.48499 * 109.47179 * 54.72347 * 11 9 7 13 13 H 1.48501 * 109.47212 * 174.72035 * 11 9 7 14 14 H 1.48496 * 109.47339 * 294.72016 * 11 9 7 15 15 C 1.34778 * 119.99671 * 275.12957 * 6 5 3 16 16 O 1.21294 * 119.99636 * 354.52199 * 15 6 5 17 17 C 1.50692 * 119.99971 * 174.51958 * 15 6 5 18 18 H 1.09008 * 109.54363 * 329.95715 * 17 15 6 19 19 C 1.53176 * 109.54691 * 90.13338 * 17 15 6 20 20 C 1.53086 * 109.16687 * 176.85082 * 19 17 15 21 21 O 1.42908 * 109.41392 * 302.38945 * 20 19 17 22 22 C 1.42900 * 114.09620 * 61.15872 * 21 20 19 23 23 H 1.08995 * 109.48145 * 58.83646 * 22 21 20 24 24 C 1.53004 * 109.48120 * 178.86006 * 22 21 20 25 25 C 1.53098 * 109.41609 * 298.84280 * 22 21 20 26 26 H 1.08994 * 109.47420 * 300.00347 * 1 2 3 27 27 H 1.08997 * 109.46883 * 60.00534 * 1 2 3 28 28 H 1.08998 * 109.46971 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47625 * 59.99182 * 5 3 2 30 30 H 1.09002 * 109.46869 * 299.99647 * 5 3 2 31 31 H 0.97003 * 119.99807 * 180.02562 * 10 9 7 32 32 H 1.09006 * 109.51994 * 296.75825 * 19 17 15 33 33 H 1.08993 * 109.52152 * 56.93889 * 19 17 15 34 34 H 1.08995 * 109.48579 * 62.37426 * 20 19 17 35 35 H 1.09002 * 109.47984 * 182.41035 * 20 19 17 36 36 H 1.09002 * 109.46642 * 59.99542 * 24 22 21 37 37 H 1.08995 * 109.46826 * 179.97438 * 24 22 21 38 38 H 1.09001 * 109.46929 * 300.00100 * 24 22 21 39 39 H 1.08999 * 109.51922 * 297.70103 * 25 22 21 40 40 H 1.08991 * 109.52203 * 177.51639 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.2782 3.3074 1.1811 8 1 3.8065 4.2473 1.4267 9 6 5.1816 2.7313 2.0660 10 7 5.1610 3.0660 3.3366 11 14 6.4249 1.4810 1.4494 12 1 7.2014 2.0669 0.3273 13 1 7.3490 1.1160 2.5532 14 1 5.7131 0.2662 0.9777 15 6 4.0723 3.3553 -1.1639 16 8 3.9070 2.7756 -2.2164 17 6 4.3788 4.8307 -1.1562 18 1 3.9853 5.2802 -0.2444 19 6 5.8950 5.0394 -1.2173 20 6 6.1934 6.5393 -1.2885 21 8 5.5389 7.1002 -2.4283 22 6 4.1155 6.9768 -2.4032 23 1 3.7236 7.4692 -1.5133 24 6 3.5241 7.6338 -3.6521 25 6 3.7335 5.4944 -2.3767 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9558 0.7809 -0.8907 30 1 3.9563 0.7806 0.8892 31 1 5.7919 2.6641 3.9543 32 1 6.3569 4.6181 -0.3243 33 1 6.2952 4.5459 -2.1028 34 1 5.8288 7.0259 -0.3839 35 1 7.2692 6.6921 -1.3753 36 1 3.9159 7.1409 -4.5419 37 1 2.4385 7.5391 -3.6329 38 1 3.7970 8.6889 -3.6713 39 1 4.0901 5.0102 -3.2858 40 1 2.6497 5.3986 -2.3130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330668555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:06 Heat of formation + Delta-G solvation = -167.027046 kcal Electronic energy + Delta-G solvation = -24122.214923 eV Core-core repulsion = 20516.441642 eV Total energy + Delta-G solvation = -3605.773281 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13499 -39.47116 -38.11948 -35.94159 -34.87460 -33.10736 -32.45930 -32.11285 -28.97897 -27.55875 -26.64168 -25.11868 -23.85541 -22.23942 -20.97169 -19.96294 -19.09180 -17.38961 -17.11434 -16.58181 -15.99638 -15.87108 -15.47409 -15.46286 -15.14492 -14.37768 -14.19956 -13.90101 -13.53208 -13.22142 -12.97423 -12.91342 -12.37677 -12.28421 -12.18984 -12.10842 -11.80849 -11.54497 -11.50655 -11.16523 -10.81044 -10.78501 -10.66353 -10.37908 -10.23984 -10.19324 -9.94841 -9.85716 -9.43008 -9.16428 -8.62778 -7.84591 -6.60196 -4.35698 2.85406 2.96391 2.99809 3.15063 3.19038 3.70023 4.00992 4.05214 4.22565 4.74977 5.13469 5.22072 5.30044 5.34289 5.40472 5.42069 5.47405 5.48709 5.66528 5.76611 5.78498 5.81061 5.85003 5.90209 5.98586 5.99601 6.22075 6.25641 6.31275 6.34366 6.49131 6.65641 6.80922 6.83604 7.21308 7.54428 7.92617 8.16476 8.37104 8.83418 9.13755 9.49408 10.49255 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.007139 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.625875 B = 3921.355598 C = 5268.914067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.449 3.551 4 O -0.495 6.495 5 C 0.108 3.892 6 N -0.455 5.455 7 C -0.349 4.349 8 H 0.100 0.900 9 C 0.076 3.924 10 N -0.851 5.851 11 Si 0.862 3.138 12 H -0.262 1.262 13 H -0.282 1.282 14 H -0.263 1.263 15 C 0.513 3.487 16 O -0.586 6.586 17 C -0.087 4.087 18 H 0.099 0.901 19 C -0.138 4.138 20 C 0.066 3.934 21 O -0.386 6.386 22 C 0.087 3.913 23 H 0.057 0.943 24 C -0.142 4.142 25 C -0.132 4.132 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.277 0.723 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 1.104 -5.882 6.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.290 3.710 4 O -0.380 6.380 5 C -0.017 4.017 6 N -0.177 5.177 7 C -0.476 4.476 8 H 0.118 0.882 9 C -0.133 4.133 10 N -0.484 5.484 11 Si 0.687 3.313 12 H -0.186 1.186 13 H -0.208 1.208 14 H -0.189 1.189 15 C 0.304 3.696 16 O -0.469 6.469 17 C -0.108 4.108 18 H 0.117 0.883 19 C -0.176 4.176 20 C -0.010 4.010 21 O -0.305 6.305 22 C 0.030 3.970 23 H 0.075 0.925 24 C -0.199 4.199 25 C -0.170 4.170 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.931 1.193 -6.326 6.721 hybrid contribution 0.194 -0.891 0.419 1.003 sum -1.737 0.302 -5.907 6.165 Atomic orbital electron populations 1.23125 0.77649 1.02806 1.02184 1.86532 1.22597 1.34614 1.84897 1.24906 0.93047 0.81097 0.71936 1.90598 1.66750 1.36344 1.44344 1.21551 0.86222 0.88790 1.05153 1.43321 1.59267 1.08274 1.06866 1.18892 1.25533 1.08888 0.94284 0.88247 1.25496 0.96488 0.96824 0.94499 1.69781 1.34590 1.42223 1.01791 0.87237 0.82541 0.82048 0.79480 1.18615 1.20803 1.18878 1.20608 0.76717 0.89368 0.82929 1.90541 1.54140 1.70539 1.31707 1.21020 0.96769 0.93252 0.99790 0.88312 1.22026 0.95035 0.96975 1.03609 1.22548 0.97266 0.92694 0.88509 1.87852 1.18882 1.79803 1.43980 1.22076 0.81497 0.95059 0.98391 0.92525 1.21741 1.00296 1.00628 0.97246 1.22095 1.00888 0.94951 0.99087 0.92232 0.92413 0.88753 0.87729 0.86629 0.91208 0.89383 0.91420 0.92890 0.89065 0.91918 0.91271 0.92189 0.90309 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.80 10.57 -39.26 -0.41 -7.22 16 3 C 0.45 9.77 7.99 36.00 0.29 10.06 16 4 O -0.50 -12.01 16.07 -18.75 -0.30 -12.31 16 5 C 0.11 2.37 4.57 -5.19 -0.02 2.35 16 6 N -0.46 -10.80 1.40 -116.10 -0.16 -10.96 16 7 C -0.35 -8.74 8.55 -14.93 -0.13 -8.87 16 8 H 0.10 2.69 7.07 -52.49 -0.37 2.32 16 9 C 0.08 1.90 5.18 -17.47 -0.09 1.81 16 10 N -0.85 -22.32 13.96 55.50 0.77 -21.54 16 11 Si 0.86 18.85 26.59 -169.99 -4.52 14.33 16 12 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.26 -5.44 5.88 56.52 0.33 -5.10 16 15 C 0.51 11.90 6.52 -10.99 -0.07 11.83 16 16 O -0.59 -14.54 15.75 5.55 0.09 -14.45 16 17 C -0.09 -1.73 1.96 -91.59 -0.18 -1.91 16 18 H 0.10 2.02 6.56 -51.92 -0.34 1.68 16 19 C -0.14 -2.50 5.40 -26.60 -0.14 -2.64 16 20 C 0.07 1.02 6.84 37.20 0.25 1.28 16 21 O -0.39 -6.26 10.41 -35.23 -0.37 -6.62 16 22 C 0.09 1.33 3.26 -26.68 -0.09 1.24 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 C -0.14 -1.77 9.56 37.16 0.36 -1.41 16 25 C -0.13 -2.34 4.35 -26.59 -0.12 -2.45 16 26 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.10 2.17 7.51 -51.93 -0.39 1.78 16 30 H 0.12 2.47 5.04 -51.93 -0.26 2.21 16 31 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.09 1.68 8.06 -51.93 -0.42 1.26 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.48 7.75 -51.93 -0.40 1.08 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 329.43 15.07 4.96 4.96 Total: -1.00 -29.98 329.43 -4.85 -34.84 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.04 Total: 6.11 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 1.12 Total: 12.86 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.61 Total: -32.50 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.00 Total: -40.60 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.52 Total: 14.33 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.98 -4.85 -34.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330668555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.191 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds