Wall clock time and date at job start Tue Mar 31 2020 02:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99867 * 2 1 4 4 O 1.20829 * 120.00037 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99928 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47286 * 179.97438 * 5 3 2 7 7 C 1.37093 * 120.00168 * 95.12600 * 6 5 3 8 8 H 1.07992 * 120.00306 * 232.10406 * 7 6 5 9 9 C 1.38957 * 119.99832 * 51.83388 * 7 6 5 10 10 N 1.31410 * 119.99701 * 201.66416 * 9 7 6 11 11 Si 1.86798 * 120.00018 * 21.65875 * 9 7 6 12 12 H 1.48499 * 109.47179 * 54.72347 * 11 9 7 13 13 H 1.48501 * 109.47212 * 174.72035 * 11 9 7 14 14 H 1.48496 * 109.47339 * 294.72016 * 11 9 7 15 15 C 1.34778 * 119.99671 * 275.12957 * 6 5 3 16 16 O 1.21294 * 119.99636 * 354.52199 * 15 6 5 17 17 C 1.50692 * 119.99971 * 174.51958 * 15 6 5 18 18 H 1.09008 * 109.54363 * 329.95715 * 17 15 6 19 19 C 1.53176 * 109.54691 * 90.13338 * 17 15 6 20 20 C 1.53086 * 109.16687 * 176.85082 * 19 17 15 21 21 O 1.42908 * 109.41392 * 302.38945 * 20 19 17 22 22 C 1.42900 * 114.09620 * 61.15872 * 21 20 19 23 23 H 1.08995 * 109.48145 * 58.83646 * 22 21 20 24 24 C 1.53004 * 109.48120 * 178.86006 * 22 21 20 25 25 C 1.53098 * 109.41609 * 298.84280 * 22 21 20 26 26 H 1.08994 * 109.47420 * 300.00347 * 1 2 3 27 27 H 1.08997 * 109.46883 * 60.00534 * 1 2 3 28 28 H 1.08998 * 109.46971 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47625 * 59.99182 * 5 3 2 30 30 H 1.09002 * 109.46869 * 299.99647 * 5 3 2 31 31 H 0.97003 * 119.99807 * 180.02562 * 10 9 7 32 32 H 1.09006 * 109.51994 * 296.75825 * 19 17 15 33 33 H 1.08993 * 109.52152 * 56.93889 * 19 17 15 34 34 H 1.08995 * 109.48579 * 62.37426 * 20 19 17 35 35 H 1.09002 * 109.47984 * 182.41035 * 20 19 17 36 36 H 1.09002 * 109.46642 * 59.99542 * 24 22 21 37 37 H 1.08995 * 109.46826 * 179.97438 * 24 22 21 38 38 H 1.09001 * 109.46929 * 300.00100 * 24 22 21 39 39 H 1.08999 * 109.51922 * 297.70103 * 25 22 21 40 40 H 1.08991 * 109.52203 * 177.51639 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.2782 3.3074 1.1811 8 1 3.8065 4.2473 1.4267 9 6 5.1816 2.7313 2.0660 10 7 5.1610 3.0660 3.3366 11 14 6.4249 1.4810 1.4494 12 1 7.2014 2.0669 0.3273 13 1 7.3490 1.1160 2.5532 14 1 5.7131 0.2662 0.9777 15 6 4.0723 3.3553 -1.1639 16 8 3.9070 2.7756 -2.2164 17 6 4.3788 4.8307 -1.1562 18 1 3.9853 5.2802 -0.2444 19 6 5.8950 5.0394 -1.2173 20 6 6.1934 6.5393 -1.2885 21 8 5.5389 7.1002 -2.4283 22 6 4.1155 6.9768 -2.4032 23 1 3.7236 7.4692 -1.5133 24 6 3.5241 7.6338 -3.6521 25 6 3.7335 5.4944 -2.3767 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9558 0.7809 -0.8907 30 1 3.9563 0.7806 0.8892 31 1 5.7919 2.6641 3.9543 32 1 6.3569 4.6181 -0.3243 33 1 6.2952 4.5459 -2.1028 34 1 5.8288 7.0259 -0.3839 35 1 7.2692 6.6921 -1.3753 36 1 3.9159 7.1409 -4.5419 37 1 2.4385 7.5391 -3.6329 38 1 3.7970 8.6889 -3.6713 39 1 4.0901 5.0102 -3.2858 40 1 2.6497 5.3986 -2.3130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330668555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:05 Heat of formation + Delta-G solvation = -185.429810 kcal Electronic energy + Delta-G solvation = -24123.012927 eV Core-core repulsion = 20516.441642 eV Total energy + Delta-G solvation = -3606.571285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.82726 -41.01673 -39.64857 -37.59367 -36.73628 -34.60765 -34.05696 -33.67262 -30.60318 -28.82632 -28.00931 -26.96457 -25.34761 -23.58993 -22.51360 -21.44332 -20.91261 -19.09660 -18.83415 -18.30209 -17.45903 -17.26720 -17.16435 -17.03286 -16.69138 -15.94410 -15.77561 -15.45826 -14.95267 -14.77920 -14.62881 -14.42221 -14.08992 -13.86860 -13.46190 -13.37721 -13.16559 -13.01443 -12.95303 -12.81983 -12.48352 -12.21987 -12.07104 -11.96949 -11.84027 -11.71348 -11.62092 -11.38817 -11.09903 -10.74588 -10.31528 -9.73927 -8.54382 -6.34301 1.13409 1.23147 1.32355 1.42021 1.45355 1.96599 2.17743 2.49221 2.83963 2.88317 3.79459 3.80691 3.85414 3.92913 4.00205 4.09173 4.24553 4.25976 4.27936 4.29190 4.33982 4.52418 4.57815 4.62322 4.63949 4.76765 4.81670 4.88159 5.04902 5.06503 5.16828 5.23682 5.28099 5.32664 5.39057 6.05328 6.11781 6.29541 6.70312 6.90350 7.22931 7.61125 8.58359 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.007139 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.625875 B = 3921.355598 C = 5268.914067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.452 3.548 4 O -0.529 6.529 5 C 0.099 3.901 6 N -0.462 5.462 7 C -0.348 4.348 8 H 0.068 0.932 9 C 0.047 3.953 10 N -0.886 5.886 11 Si 0.907 3.093 12 H -0.264 1.264 13 H -0.275 1.275 14 H -0.242 1.242 15 C 0.505 3.495 16 O -0.606 6.606 17 C -0.089 4.089 18 H 0.086 0.914 19 C -0.133 4.133 20 C 0.070 3.930 21 O -0.390 6.390 22 C 0.087 3.913 23 H 0.064 0.936 24 C -0.138 4.138 25 C -0.125 4.125 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.141 0.859 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.283 0.717 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.505 0.612 -6.661 6.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.294 3.706 4 O -0.417 6.417 5 C -0.025 4.025 6 N -0.184 5.184 7 C -0.475 4.475 8 H 0.086 0.914 9 C -0.160 4.160 10 N -0.521 5.521 11 Si 0.730 3.270 12 H -0.188 1.188 13 H -0.200 1.200 14 H -0.166 1.166 15 C 0.296 3.704 16 O -0.491 6.491 17 C -0.110 4.110 18 H 0.105 0.895 19 C -0.171 4.171 20 C -0.006 4.006 21 O -0.310 6.310 22 C 0.030 3.970 23 H 0.082 0.918 24 C -0.195 4.195 25 C -0.163 4.163 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.159 0.841 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.662 0.674 -7.104 7.327 hybrid contribution -0.019 -0.794 0.680 1.045 sum -1.681 -0.120 -6.425 6.642 Atomic orbital electron populations 1.23549 0.74930 1.05854 1.02153 1.86497 1.25117 1.32448 1.84052 1.24761 0.93046 0.81547 0.71243 1.90583 1.67417 1.37604 1.46091 1.21650 0.86942 0.87940 1.06001 1.43373 1.59533 1.08990 1.06494 1.18596 1.25818 1.08327 0.94765 0.91412 1.25957 0.97391 0.98462 0.94194 1.69839 1.35556 1.43839 1.02845 0.86484 0.80564 0.80875 0.79098 1.18813 1.20044 1.16616 1.21196 0.76052 0.90635 0.82502 1.90511 1.55118 1.71289 1.32158 1.21076 0.98344 0.91265 1.00287 0.89532 1.21992 0.93358 0.99173 1.02602 1.22610 0.98835 0.90452 0.88730 1.87860 1.19322 1.79526 1.44259 1.22190 0.81299 0.93277 1.00272 0.91836 1.21746 1.00976 1.01208 0.95528 1.22057 1.00295 0.96695 0.97264 0.92412 0.92408 0.84150 0.86440 0.86019 0.90680 0.90741 0.91929 0.92307 0.86445 0.92105 0.89909 0.90566 0.91504 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.37 -12.88 10.57 -51.42 -0.54 -13.42 16 3 C 0.45 19.50 7.99 71.23 0.57 20.07 16 4 O -0.53 -25.92 16.07 21.95 0.35 -25.56 16 5 C 0.10 4.31 4.57 85.63 0.39 4.70 16 6 N -0.46 -22.13 1.40 -639.61 -0.90 -23.03 16 7 C -0.35 -17.81 8.55 84.04 0.72 -17.10 16 8 H 0.07 3.85 7.07 -2.91 -0.02 3.83 16 9 C 0.05 2.34 5.18 84.93 0.44 2.78 16 10 N -0.89 -46.92 13.96 21.67 0.30 -46.62 16 11 Si 0.91 37.97 26.59 68.60 1.82 39.79 16 12 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 13 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 14 H -0.24 -9.24 5.88 99.48 0.58 -8.66 16 15 C 0.50 23.72 6.52 87.65 0.57 24.30 16 16 O -0.61 -30.28 15.75 -3.07 -0.05 -30.32 16 17 C -0.09 -3.58 1.96 -11.42 -0.02 -3.61 16 18 H 0.09 3.69 6.56 -2.38 -0.02 3.67 16 19 C -0.13 -4.80 5.40 30.68 0.17 -4.63 16 20 C 0.07 2.06 6.84 72.01 0.49 2.56 16 21 O -0.39 -11.99 10.41 -148.98 -1.55 -13.54 16 22 C 0.09 2.54 3.26 30.63 0.10 2.64 16 23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 24 C -0.14 -3.15 9.56 71.98 0.69 -2.46 16 25 C -0.12 -4.42 4.35 30.69 0.13 -4.29 16 26 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 27 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 28 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.12 4.75 7.51 -2.39 -0.02 4.73 16 30 H 0.12 5.06 5.04 -2.39 -0.01 5.05 16 31 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.07 2.86 8.06 -2.38 -0.02 2.84 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 2.51 7.75 -2.39 -0.02 2.50 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -64.62 329.43 5.80 -58.83 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.91 Total: 26.98 kcal Atomic # 6 Polarization: 21.46 SS G_CDS: 5.45 Total: 26.91 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -0.59 Total: -69.65 kcal Atomic # 8 Polarization: -81.06 SS G_CDS: -1.79 Total: -82.85 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 1.82 Total: 39.79 kcal Total: -64.62 5.80 -58.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330668555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.602 kcal (2) G-P(sol) polarization free energy of solvation -64.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds