Wall clock time and date at job start Tue Mar 31 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 120.00167 * 2 1 4 4 H 1.48501 * 109.47243 * 270.00353 * 3 2 1 5 5 H 1.48490 * 109.46998 * 30.00444 * 3 2 1 6 6 H 1.48503 * 109.46798 * 150.00460 * 3 2 1 7 7 C 1.38952 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99746 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00457 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00620 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99446 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00158 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.47160 * 179.97438 * 12 10 9 14 14 C 1.34771 * 120.00295 * 179.97438 * 13 12 10 15 15 O 1.21591 * 119.99743 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00084 * 180.02562 * 14 13 12 17 17 C 1.46511 * 119.99836 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46857 * 180.02562 * 17 16 14 19 19 H 1.09000 * 109.49255 * 59.97227 * 18 17 16 20 20 C 1.53091 * 109.47862 * 180.02562 * 18 17 16 21 21 C 1.53176 * 109.21206 * 177.62293 * 20 18 17 22 22 C 1.53174 * 109.04061 * 302.98570 * 21 20 18 23 23 C 1.53097 * 109.16185 * 56.97999 * 22 21 20 24 24 O 1.42902 * 109.41493 * 302.39739 * 23 22 21 25 25 H 0.97005 * 120.00163 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99321 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46697 * 60.00314 * 12 10 9 28 28 H 1.09000 * 109.47419 * 299.99655 * 12 10 9 29 29 H 0.97006 * 119.99852 * 0.02562 * 13 12 10 30 30 H 0.96998 * 120.00110 * 0.02562 * 16 14 13 31 31 H 1.09002 * 109.46593 * 60.00447 * 17 16 14 32 32 H 1.08995 * 109.47224 * 300.00285 * 17 16 14 33 33 H 1.09002 * 109.52401 * 57.68445 * 20 18 17 34 34 H 1.09004 * 109.52068 * 297.56090 * 20 18 17 35 35 H 1.08995 * 109.54674 * 62.85906 * 21 20 18 36 36 H 1.08999 * 109.54128 * 183.11874 * 21 20 18 37 37 H 1.08995 * 109.52612 * 176.89131 * 22 21 20 38 38 H 1.09004 * 109.52214 * 297.01676 * 22 21 20 39 39 H 1.08997 * 109.47580 * 62.37620 * 23 22 21 40 40 H 1.08994 * 109.47934 * 182.41016 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4457 2.6525 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3798 -1.2035 -0.0011 10 6 4.0536 -2.3707 -0.0011 11 8 3.4471 -3.4210 -0.0001 12 6 5.5606 -2.3707 -0.0022 13 7 6.0490 -3.7519 -0.0014 14 6 7.3740 -3.9983 -0.0027 15 8 8.1641 -3.0741 -0.0041 16 7 7.8231 -5.2690 -0.0024 17 6 9.2636 -5.5367 -0.0033 18 6 9.5013 -7.0481 -0.0034 19 1 9.0493 -7.4873 -0.8928 20 6 11.0064 -7.3281 -0.0037 21 6 11.2376 -8.8412 0.0562 22 6 10.5432 -9.4040 1.3001 23 6 9.0557 -9.0450 1.2509 24 8 8.9121 -7.6258 1.1649 25 1 -0.4850 0.8401 0.0004 26 1 3.8648 -0.3634 -0.0014 27 1 5.9246 -1.8565 0.8873 28 1 5.9233 -1.8573 -0.8927 29 1 5.4186 -4.4892 -0.0006 30 1 7.1928 -6.0062 -0.0017 31 1 9.7152 -5.0975 0.8862 32 1 9.7141 -5.0983 -0.8937 33 1 11.4651 -6.8549 0.8645 34 1 11.4513 -6.9274 -0.9146 35 1 10.8224 -9.3091 -0.8364 36 1 12.3070 -9.0447 0.1121 37 1 10.6559 -10.4879 1.3212 38 1 10.9933 -8.9735 2.1947 39 1 8.5983 -9.5102 0.3778 40 1 8.5646 -9.4060 2.1545 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345082497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:24 Heat of formation + Delta-G solvation = -120.842436 kcal Electronic energy + Delta-G solvation = -21993.399818 eV Core-core repulsion = 18421.922003 eV Total energy + Delta-G solvation = -3571.477815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15158 -39.47008 -38.31991 -35.04059 -34.39823 -34.01732 -33.67274 -31.84204 -31.67782 -28.23100 -26.66992 -24.61687 -24.05270 -22.42849 -20.95239 -20.39977 -19.60411 -18.77853 -18.07563 -16.84734 -16.46288 -16.15493 -15.58194 -15.44350 -15.05859 -14.89582 -14.81469 -14.37344 -14.23091 -13.99738 -13.33382 -13.15784 -13.09590 -12.93193 -12.52148 -12.42334 -12.13095 -11.98905 -11.69421 -11.49485 -11.21028 -11.12493 -10.70632 -10.61717 -10.10109 -10.03397 -9.81664 -9.67011 -9.16305 -8.73230 -8.61529 -8.27622 -6.38291 -3.90702 2.79295 3.02276 3.06845 3.14717 3.33076 3.42223 3.61601 4.06011 4.23153 4.33961 4.41452 4.45626 4.59131 4.70805 4.76064 4.79530 5.03250 5.16881 5.17665 5.29555 5.35896 5.41648 5.50977 5.58645 5.63493 5.69034 5.73873 5.84358 5.87839 5.90500 6.49400 6.70079 6.86280 7.10491 7.47923 8.03292 8.23940 8.47448 8.79153 8.84548 9.32760 9.66906 10.73930 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.044393 B = 0.002551 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.572320 B =10971.322187 C =11456.090579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.309 4.309 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.439 3.561 11 O -0.579 6.579 12 C 0.126 3.874 13 N -0.725 5.725 14 C 0.706 3.294 15 O -0.601 6.601 16 N -0.743 5.743 17 C 0.150 3.850 18 C 0.078 3.922 19 H 0.066 0.934 20 C -0.148 4.148 21 C -0.122 4.122 22 C -0.158 4.158 23 C 0.060 3.940 24 O -0.374 6.374 25 H 0.275 0.725 26 H 0.375 0.625 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.408 0.592 30 H 0.400 0.600 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.155 -15.426 -0.116 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.225 3.775 11 O -0.463 6.463 12 C -0.002 4.002 13 N -0.383 5.383 14 C 0.406 3.594 15 O -0.481 6.481 16 N -0.399 5.399 17 C 0.026 3.974 18 C 0.020 3.980 19 H 0.084 0.916 20 C -0.186 4.186 21 C -0.159 4.159 22 C -0.196 4.196 23 C -0.017 4.017 24 O -0.293 6.293 25 H 0.086 0.914 26 H 0.208 0.792 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.245 0.755 30 H 0.234 0.766 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 22.139 -15.016 0.023 26.751 hybrid contribution 0.114 0.494 -0.149 0.529 sum 22.253 -14.522 -0.126 26.573 Atomic orbital electron populations 1.69618 1.05710 1.27775 1.48340 1.25066 0.95539 0.98176 0.97186 0.86665 0.79943 0.83743 0.79124 1.19410 1.20021 1.19171 1.19438 0.78985 0.96777 1.48579 0.86109 1.42117 1.07675 1.06147 1.65573 1.19678 0.88140 0.84845 0.84813 1.90535 1.69280 1.30942 1.55576 1.20794 0.93242 0.82979 1.03208 1.44735 1.05241 1.09250 1.79034 1.15817 0.82549 0.83154 0.77924 1.90896 1.55210 1.43232 1.58736 1.44881 1.07736 1.06372 1.80958 1.21172 0.81029 0.92230 1.02996 1.22401 0.93289 0.93430 0.88883 0.91646 1.22125 0.95936 0.96947 1.03627 1.21573 1.01027 0.95208 0.98112 1.22207 0.96900 1.01343 0.99123 1.22583 0.95359 0.81557 1.02156 1.88029 1.77693 1.20586 1.42994 0.91421 0.79228 0.89905 0.89900 0.75454 0.76553 0.90909 0.90226 0.90514 0.90399 0.91739 0.91268 0.90911 0.90942 0.93130 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.17 13.96 55.50 0.77 -24.40 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 19.20 27.74 -169.99 -4.71 14.48 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 7 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.58 -13.62 5.09 -10.96 -0.06 -13.67 16 10 C 0.44 9.84 7.85 -10.99 -0.09 9.75 16 11 O -0.58 -14.83 15.24 5.54 0.08 -14.74 16 12 C 0.13 2.27 6.15 -5.19 -0.03 2.24 16 13 N -0.72 -12.15 5.53 -66.41 -0.37 -12.51 16 14 C 0.71 11.53 8.57 -86.93 -0.74 10.78 16 15 O -0.60 -11.66 16.34 5.29 0.09 -11.57 16 16 N -0.74 -9.27 5.45 -65.22 -0.36 -9.62 16 17 C 0.15 1.58 5.37 -4.04 -0.02 1.55 16 18 C 0.08 0.64 2.74 -26.68 -0.07 0.56 16 19 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 20 C -0.15 -0.96 5.41 -26.59 -0.14 -1.10 16 21 C -0.12 -0.67 6.03 -26.55 -0.16 -0.83 16 22 C -0.16 -0.91 6.14 -26.59 -0.16 -1.07 16 23 C 0.06 0.42 6.84 37.21 0.25 0.67 16 24 O -0.37 -3.58 10.16 -35.23 -0.36 -3.94 16 25 H 0.28 7.29 8.31 -40.82 -0.34 6.96 16 26 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 27 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.41 6.70 7.45 -40.82 -0.30 6.39 16 30 H 0.40 4.33 8.37 -40.82 -0.34 3.99 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -33.66 334.13 -7.22 -40.88 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -5.93 Total: 15.15 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: -1.42 Total: 14.91 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.00 Total: -60.21 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.19 Total: -30.26 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.66 -7.22 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345082497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.961 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds