Wall clock time and date at job start Tue Mar 31 2020 02:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46826 * 2 1 4 4 C 1.46498 * 119.99634 * 88.45380 * 3 2 1 5 5 C 1.50699 * 109.47395 * 86.03993 * 4 3 2 6 6 H 1.08000 * 119.99959 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00098 * 179.97438 * 5 4 3 8 8 N 1.31506 * 119.99744 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99925 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47250 * 180.02562 * 9 7 5 11 11 H 1.48507 * 109.47128 * 60.00336 * 9 7 5 12 12 H 1.48497 * 109.47214 * 300.00717 * 9 7 5 13 13 C 1.34765 * 120.00098 * 268.45292 * 3 2 1 14 14 O 1.21287 * 120.00376 * 4.90008 * 13 3 2 15 15 C 1.50702 * 119.99967 * 184.90470 * 13 3 2 16 16 H 1.09002 * 110.27452 * 45.37436 * 15 13 3 17 17 C 1.54942 * 110.31165 * 283.28032 * 15 13 3 18 18 C 1.55293 * 100.94831 * 204.63961 * 17 15 13 19 19 C 1.54386 * 102.25114 * 34.13281 * 18 17 15 20 20 H 1.09001 * 109.83037 * 98.15753 * 19 18 17 21 21 C 1.50694 * 109.83245 * 219.03845 * 19 18 17 22 22 O 1.20831 * 119.99908 * 115.00347 * 21 19 18 23 23 O 1.34235 * 120.00487 * 294.99984 * 21 19 18 24 24 C 1.45192 * 117.00380 * 179.97438 * 23 21 19 25 25 O 1.43235 * 107.59045 * 338.64796 * 19 18 17 26 26 H 1.09000 * 109.47120 * 59.99841 * 1 2 3 27 27 H 1.08998 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47581 * 299.99861 * 1 2 3 29 29 H 1.08997 * 109.47581 * 240.00139 * 2 1 3 30 30 H 1.09000 * 109.47120 * 120.00159 * 2 1 3 31 31 H 1.09001 * 109.47238 * 326.03807 * 4 3 2 32 32 H 1.09004 * 109.47054 * 206.04351 * 4 3 2 33 33 H 0.96998 * 120.01038 * 359.97438 * 8 7 5 34 34 H 1.09005 * 111.12689 * 322.56522 * 17 15 13 35 35 H 1.09004 * 111.12228 * 86.71716 * 17 15 13 36 36 H 1.09000 * 110.85500 * 152.32394 * 18 17 15 37 37 H 1.09000 * 110.84921 * 275.74503 * 18 17 15 38 38 H 1.09005 * 109.47126 * 59.99871 * 24 23 21 39 39 H 1.09000 * 109.47572 * 180.02562 * 24 23 21 40 40 H 1.08998 * 109.47481 * 300.00328 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2301 2.0833 1.2683 5 6 3.6090 1.7721 1.7905 6 1 4.2625 1.1173 1.2332 7 6 4.0369 2.3242 2.9794 8 7 3.2413 3.1219 3.6577 9 14 5.7464 1.9390 3.6263 10 1 5.9611 2.6504 4.9120 11 1 6.7616 2.3843 2.6381 12 1 5.8755 0.4756 3.8432 13 6 2.2726 2.0061 -1.1667 14 8 2.0137 1.4580 -2.2172 15 6 2.8787 3.3859 -1.1660 16 1 3.7071 3.4342 -0.4592 17 6 1.8052 4.4448 -0.8096 18 6 2.4080 5.7116 -1.4754 19 6 3.0959 5.1276 -2.7281 20 1 2.4484 5.2499 -3.5964 21 6 4.4075 5.8305 -2.9657 22 8 5.4456 5.2188 -2.8758 23 8 4.4226 7.1361 -3.2773 24 6 5.7218 7.7476 -3.4919 25 8 3.3258 3.7347 -2.4859 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.4847 1.7565 1.9934 32 1 2.1356 3.1575 1.1092 33 1 2.3538 3.3223 3.3217 34 1 0.8410 4.1905 -1.2501 35 1 1.7207 4.5706 0.2698 36 1 1.6227 6.4136 -1.7558 37 1 3.1344 6.1877 -0.8167 38 1 6.2288 7.2442 -4.3151 39 1 5.5914 8.8020 -3.7354 40 1 6.3208 7.6558 -2.5859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354917788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:10 Heat of formation + Delta-G solvation = -166.046159 kcal Electronic energy + Delta-G solvation = -23729.436107 eV Core-core repulsion = 20123.705360 eV Total energy + Delta-G solvation = -3605.730747 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.81808 -39.71418 -38.14346 -36.32550 -35.39347 -33.06739 -32.28091 -31.22285 -29.70393 -27.66446 -26.67322 -24.66968 -23.21091 -22.48259 -21.83311 -20.75877 -18.78793 -18.04746 -17.28716 -16.91268 -16.66131 -16.46638 -15.92501 -15.27487 -14.86324 -14.59150 -14.00050 -13.82254 -13.44860 -13.34663 -13.21208 -12.89509 -12.65049 -12.36493 -12.28271 -12.05662 -11.77836 -11.64400 -11.60447 -11.44552 -11.09350 -10.94218 -10.86056 -10.68775 -10.54126 -10.36970 -10.18314 -9.71054 -9.30571 -8.94275 -8.55643 -7.76440 -6.56875 -4.33195 2.18311 2.43219 3.11318 3.36500 3.38399 3.52718 3.56542 4.14009 4.35872 4.40887 4.66041 4.77277 5.00071 5.03545 5.05560 5.09618 5.15191 5.31757 5.39403 5.42835 5.60712 5.66270 5.71478 5.79934 5.82786 5.87639 6.17161 6.19117 6.28542 6.30989 6.51720 6.54524 6.72447 6.87270 7.34397 7.76532 7.78618 8.04177 8.34254 8.60791 8.84207 9.37354 10.79143 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.006111 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.505326 B = 4580.505098 C = 6006.913938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.587 5.587 4 C 0.219 3.781 5 C -0.620 4.620 6 H 0.057 0.943 7 C 0.026 3.974 8 N -0.904 5.904 9 Si 1.066 2.934 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.521 3.479 14 O -0.553 6.553 15 C 0.064 3.936 16 H 0.115 0.885 17 C -0.143 4.143 18 C -0.137 4.137 19 C 0.093 3.907 20 H 0.121 0.879 21 C 0.445 3.555 22 O -0.484 6.484 23 O -0.360 6.360 24 C 0.035 3.965 25 O -0.325 6.325 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.034 0.966 33 H 0.267 0.733 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.039 7.622 -8.820 12.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.319 5.319 4 C 0.099 3.901 5 C -0.658 4.658 6 H 0.075 0.925 7 C -0.179 4.179 8 N -0.539 5.539 9 Si 0.893 3.107 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.307 3.693 14 O -0.432 6.432 15 C 0.003 3.997 16 H 0.133 0.867 17 C -0.181 4.181 18 C -0.175 4.175 19 C 0.033 3.967 20 H 0.139 0.861 21 C 0.286 3.714 22 O -0.369 6.369 23 O -0.277 6.277 24 C -0.059 4.059 25 O -0.242 6.242 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.681 7.310 -8.218 11.127 hybrid contribution -0.737 -0.162 -1.023 1.271 sum -2.419 7.148 -9.240 11.930 Atomic orbital electron populations 1.22105 0.96735 1.01414 1.01860 1.21259 0.93470 0.83156 1.02697 1.47942 1.63417 1.13604 1.06956 1.19685 0.97650 0.92470 0.80313 1.22348 1.00070 1.33636 1.09780 0.92507 1.25802 1.05124 0.93513 0.93460 1.70852 1.09318 1.33606 1.40118 0.83566 0.74299 0.76347 0.76457 1.20588 1.21157 1.21230 1.20034 0.78380 0.87044 0.83809 1.90619 1.53639 1.67498 1.31437 1.23038 0.98113 0.93372 0.85134 0.86736 1.23338 0.98616 0.92634 1.03489 1.23062 1.00935 0.98673 0.94828 1.22218 0.89830 0.83166 1.01443 0.86150 1.24312 0.92837 0.80668 0.73611 1.90706 1.34606 1.66233 1.45326 1.86481 1.35303 1.25210 1.80749 1.23259 0.82673 0.97841 1.02112 1.88613 1.83321 1.20002 1.32287 0.92750 0.92232 0.92675 0.90954 0.90250 0.95440 0.94847 0.92241 0.89674 0.87587 0.88169 0.89448 0.91953 0.88091 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.12 2.19 6.13 -4.04 -0.02 2.17 16 3 N -0.59 -12.42 2.46 -175.06 -0.43 -12.85 16 4 C 0.22 4.97 4.13 -5.20 -0.02 4.95 16 5 C -0.62 -16.06 9.06 -34.44 -0.31 -16.38 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.03 0.70 5.46 -17.82 -0.10 0.60 16 8 N -0.90 -24.86 13.65 55.43 0.76 -24.10 16 9 Si 1.07 24.07 29.90 -169.99 -5.08 18.99 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.52 11.32 7.00 -10.99 -0.08 11.24 16 14 O -0.55 -13.20 16.20 -13.45 -0.22 -13.41 16 15 C 0.06 1.25 2.93 -26.86 -0.08 1.17 16 16 H 0.12 2.50 7.40 -51.93 -0.38 2.11 16 17 C -0.14 -2.16 5.97 -24.49 -0.15 -2.31 16 18 C -0.14 -1.72 6.53 -24.79 -0.16 -1.88 16 19 C 0.09 1.38 4.05 -27.16 -0.11 1.27 16 20 H 0.12 1.44 8.14 -51.93 -0.42 1.01 16 21 C 0.44 6.96 7.15 36.00 0.26 7.22 16 22 O -0.48 -9.43 16.28 -25.40 -0.41 -9.85 16 23 O -0.36 -4.54 10.56 -39.27 -0.41 -4.96 16 24 C 0.03 0.34 10.56 101.05 1.07 1.41 16 25 O -0.32 -6.42 9.85 -64.31 -0.63 -7.05 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.38 7.45 -51.93 -0.39 0.99 16 30 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16 31 H 0.03 0.64 7.97 -51.93 -0.41 0.23 16 32 H 0.03 0.74 4.29 -51.93 -0.22 0.51 16 33 H 0.27 7.14 7.22 -40.82 -0.29 6.85 16 34 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 35 H 0.11 1.62 6.26 -51.93 -0.33 1.29 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.11 7.85 -51.93 -0.41 0.70 16 38 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 LS Contribution 336.93 15.07 5.08 5.08 Total: -1.00 -32.98 336.93 -6.54 -39.52 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.86 Total: 1.36 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 0.68 Total: 7.28 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.33 Total: -36.95 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.68 Total: -35.27 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.08 Total: 18.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.98 -6.54 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354917788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.525 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds