Wall clock time and date at job start Tue Mar 31 2020 02:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34230 * 116.99498 * 2 1 4 4 O 1.20825 * 120.00374 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99702 * 180.02562 * 3 2 1 6 6 C 1.52991 * 109.47086 * 176.20092 * 5 3 2 7 7 C 1.53000 * 109.61733 * 301.19661 * 6 5 3 8 8 N 1.46504 * 109.46962 * 305.04373 * 7 6 5 9 9 C 1.34773 * 119.99848 * 183.29257 * 8 7 6 10 10 O 1.21691 * 120.00265 * 359.97438 * 9 8 7 11 11 C 1.46370 * 120.00032 * 180.02562 * 9 8 7 12 12 H 1.08003 * 120.00052 * 359.97438 * 11 9 8 13 13 C 1.40051 * 120.00250 * 180.02562 * 11 9 8 14 14 N 1.30679 * 119.99864 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00225 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47179 * 59.99521 * 15 13 11 17 17 H 1.48504 * 109.47186 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46692 * 299.99192 * 15 13 11 19 19 C 1.53183 * 109.54950 * 61.41976 * 6 5 3 20 20 C 1.53087 * 109.16429 * 176.84795 * 19 6 5 21 21 O 1.42901 * 109.41825 * 302.38894 * 20 19 6 22 22 C 1.42908 * 114.09304 * 61.15956 * 21 20 19 23 23 C 1.53088 * 109.41690 * 298.84205 * 22 21 20 24 24 H 1.08992 * 109.46859 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47212 * 300.00566 * 1 2 3 26 26 H 1.09007 * 109.47013 * 60.00543 * 1 2 3 27 27 H 1.08999 * 109.47370 * 56.19136 * 5 3 2 28 28 H 1.09001 * 109.46499 * 296.19436 * 5 3 2 29 29 H 1.09005 * 109.46717 * 65.03855 * 7 6 5 30 30 H 1.09001 * 109.47660 * 185.04112 * 7 6 5 31 31 H 0.96995 * 120.00139 * 3.28593 * 8 7 6 32 32 H 0.96997 * 119.99422 * 180.02562 * 14 13 11 33 33 H 1.08996 * 109.51972 * 296.75894 * 19 6 5 34 34 H 1.08998 * 109.51611 * 56.94052 * 19 6 5 35 35 H 1.09006 * 109.48140 * 182.41259 * 20 19 6 36 36 H 1.08993 * 109.49091 * 62.38427 * 20 19 6 37 37 H 1.09004 * 109.48015 * 178.85883 * 22 21 20 38 38 H 1.08998 * 109.49209 * 58.83343 * 22 21 20 39 39 H 1.09005 * 109.52364 * 297.70196 * 23 22 21 40 40 H 1.08998 * 109.52727 * 177.51607 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0002 2.7390 -0.0960 7 6 3.4338 3.3603 -1.3743 8 7 3.8390 2.5555 -2.5295 9 6 3.5093 2.9507 -3.7751 10 8 2.8746 3.9758 -3.9402 11 6 3.9137 2.1464 -4.9292 12 1 4.4766 1.2364 -4.7827 13 6 3.5715 2.5573 -6.2236 14 7 2.8909 3.6586 -6.4010 15 14 4.0882 1.5312 -7.6966 16 1 3.4998 0.1725 -7.5842 17 1 3.6061 2.1774 -8.9437 18 1 5.5692 1.4279 -7.7328 19 6 3.4794 3.5084 1.1219 20 6 3.9842 4.9522 1.0577 21 8 5.4123 4.9543 1.0054 22 6 5.9552 4.2901 -0.1375 23 6 5.5297 2.8196 -0.1214 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.9588 0.7232 -0.8547 28 1 3.9532 0.8408 0.9213 29 1 2.3458 3.3872 -1.3140 30 1 3.8167 4.3747 -1.4859 31 1 4.3447 1.7383 -2.3979 32 1 2.6536 3.9430 -7.2975 33 1 2.3895 3.5029 1.1174 34 1 3.8432 3.0355 2.0341 35 1 3.6522 5.4931 1.9439 36 1 3.5871 5.4370 0.1660 37 1 7.0431 4.3540 -0.1123 38 1 5.5841 4.7660 -1.0451 39 1 5.9348 2.3328 0.7658 40 1 5.9059 2.3216 -1.0150 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356623855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:32 Heat of formation + Delta-G solvation = -174.003129 kcal Electronic energy + Delta-G solvation = -24135.382763 eV Core-core repulsion = 20529.306976 eV Total energy + Delta-G solvation = -3606.075787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.92951 -39.42276 -37.19319 -36.50441 -35.09531 -32.63306 -31.77545 -30.90624 -29.79842 -27.36844 -26.95094 -24.94086 -23.61425 -23.20719 -20.82129 -19.79997 -18.56852 -17.48857 -17.28026 -16.43361 -16.36707 -15.83622 -15.76468 -15.32373 -14.80584 -14.58063 -14.41964 -13.94452 -13.66169 -13.49706 -12.90385 -12.77323 -12.39738 -12.13913 -12.07361 -11.99653 -11.89901 -11.31232 -11.17310 -11.16615 -10.87675 -10.83042 -10.75495 -10.49830 -10.43526 -10.28530 -10.06727 -9.70997 -9.24434 -8.83016 -7.58953 -7.42519 -6.16981 -4.62977 2.36335 2.81167 3.15355 3.20318 3.22052 4.04825 4.10746 4.55209 4.61833 4.65320 4.76697 4.99959 5.09511 5.13062 5.19175 5.23331 5.28834 5.38890 5.41639 5.53565 5.56856 5.71670 5.80173 5.84732 5.86077 5.90276 6.00138 6.18813 6.25941 6.27893 6.47916 6.58972 6.86564 7.35757 7.43609 7.90372 7.93893 8.11221 8.33007 9.03424 9.55036 10.62220 10.81459 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.005924 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.750787 B = 4725.681500 C = 5946.711487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.464 3.536 4 O -0.492 6.492 5 C -0.102 4.102 6 C -0.058 4.058 7 C 0.127 3.873 8 N -0.767 5.767 9 C 0.556 3.444 10 O -0.579 6.579 11 C -0.548 4.548 12 H 0.066 0.934 13 C 0.088 3.912 14 N -0.768 5.768 15 Si 0.906 3.094 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.152 4.152 20 C 0.059 3.941 21 O -0.388 6.388 22 C 0.059 3.941 23 C -0.141 4.141 24 H 0.097 0.903 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.374 0.626 32 H 0.268 0.732 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 -6.519 14.694 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.307 3.693 4 O -0.379 6.379 5 C -0.140 4.140 6 C -0.058 4.058 7 C 0.003 3.997 8 N -0.424 5.424 9 C 0.359 3.641 10 O -0.462 6.462 11 C -0.585 4.585 12 H 0.084 0.916 13 C -0.132 4.132 14 N -0.397 5.397 15 Si 0.731 3.269 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.190 4.190 20 C -0.017 4.017 21 O -0.307 6.307 22 C -0.017 4.017 23 C -0.179 4.179 24 H 0.116 0.884 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.207 0.793 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.202 -5.219 14.576 15.529 hybrid contribution 0.110 -1.126 -0.942 1.472 sum 1.311 -6.344 13.634 15.095 Atomic orbital electron populations 1.23222 0.76565 1.03362 1.02611 1.86487 1.23336 1.33843 1.84371 1.23688 0.92124 0.81230 0.72268 1.90583 1.67223 1.35730 1.44367 1.21467 0.87863 0.99209 1.05454 1.20698 0.95458 0.92676 0.97000 1.21304 1.00250 0.94713 0.83472 1.46218 1.62550 1.27644 1.06017 1.18174 0.79379 0.85539 0.80993 1.90607 1.43586 1.27078 1.84899 1.20842 1.38033 1.09556 0.90036 0.91622 1.25698 0.93216 0.94464 0.99798 1.70017 1.27960 1.19166 1.22534 0.86463 0.79576 0.80433 0.80422 1.19349 1.20580 1.19294 1.22444 1.03600 0.96304 0.96654 1.22597 0.80986 0.96008 1.02144 1.87864 1.20438 1.77121 1.45238 1.22596 0.98576 0.91399 0.89155 1.22187 0.94316 0.98412 1.02957 0.88412 0.92163 0.91633 0.87347 0.87843 0.90934 0.92954 0.79339 0.92099 0.88332 0.91602 0.89232 0.92445 0.89051 0.92089 0.91157 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.02 10.57 -39.26 -0.41 -5.44 16 3 C 0.46 6.97 7.39 36.01 0.27 7.24 16 4 O -0.49 -8.64 11.17 -18.75 -0.21 -8.85 16 5 C -0.10 -1.29 4.64 -27.88 -0.13 -1.42 16 6 C -0.06 -0.82 0.27 -154.33 -0.04 -0.86 16 7 C 0.13 2.49 3.61 -4.04 -0.01 2.48 16 8 N -0.77 -16.81 4.95 -61.72 -0.31 -17.11 16 9 C 0.56 15.82 7.75 -12.99 -0.10 15.72 16 10 O -0.58 -19.06 15.02 5.20 0.08 -18.98 16 11 C -0.55 -15.43 9.54 -35.63 -0.34 -15.77 16 12 H 0.07 1.68 7.85 -52.48 -0.41 1.26 16 13 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16 14 N -0.77 -23.27 11.83 55.55 0.66 -22.62 16 15 Si 0.91 20.18 29.56 -169.99 -5.02 15.15 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 C -0.15 -2.03 4.59 -26.59 -0.12 -2.15 16 20 C 0.06 0.82 6.57 37.20 0.24 1.06 16 21 O -0.39 -5.69 10.77 -35.23 -0.38 -6.07 16 22 C 0.06 0.83 6.57 37.20 0.24 1.07 16 23 C -0.14 -1.79 4.83 -26.59 -0.13 -1.92 16 24 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 26 H 0.06 0.83 8.13 -51.92 -0.42 0.41 16 27 H 0.11 1.33 6.56 -51.93 -0.34 0.99 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.63 5.70 -51.93 -0.30 1.34 16 30 H 0.05 1.12 5.03 -51.93 -0.26 0.85 16 31 H 0.37 7.06 6.20 -40.82 -0.25 6.80 16 32 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 33 H 0.10 1.44 5.60 -51.93 -0.29 1.15 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.88 6.72 -51.93 -0.35 0.53 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.99 6.49 -51.93 -0.34 0.65 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.04 7.22 -51.93 -0.37 0.66 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -36.13 317.78 -5.39 -41.52 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.43 Total: 8.32 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 0.85 Total: 9.29 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.35 Total: -39.73 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.93 Total: -39.34 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.13 -5.39 -41.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356623855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.482 kcal (2) G-P(sol) polarization free energy of solvation -36.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds