Wall clock time and date at job start Tue Mar 31 2020 03:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.55179 * 2 1 4 4 C 1.53715 * 109.44757 * 120.26521 * 2 1 3 5 5 N 1.47151 * 108.16134 * 172.37469 * 4 2 1 6 6 C 1.34777 * 120.97955 * 129.43374 * 5 4 2 7 7 O 1.21588 * 119.99565 * 184.92977 * 6 5 4 8 8 N 1.34774 * 120.00021 * 4.92948 * 6 5 4 9 9 C 1.46500 * 119.99673 * 175.02125 * 8 6 5 10 10 C 1.50701 * 109.46793 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00441 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99835 * 179.97438 * 10 9 8 13 13 C 1.37097 * 120.00185 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00099 * 359.97438 * 13 12 10 15 15 C 1.38948 * 120.00149 * 180.02562 * 13 12 10 16 16 N 1.31404 * 120.00408 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99937 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47275 * 59.99708 * 17 15 13 19 19 H 1.48503 * 109.46991 * 299.99579 * 17 15 13 20 20 H 1.48496 * 109.47182 * 179.97438 * 17 15 13 21 21 C 1.47152 * 118.03507 * 309.15978 * 5 4 2 22 22 H 1.09005 * 109.68085 * 170.55009 * 21 5 4 23 23 C 1.53005 * 109.68135 * 291.06316 * 21 5 4 24 24 C 1.53287 * 108.38849 * 50.78500 * 21 5 4 25 25 O 1.42961 * 109.51152 * 239.87924 * 2 1 3 26 26 H 1.09002 * 109.46680 * 180.12464 * 1 2 3 27 27 H 1.09001 * 109.46972 * 300.11899 * 1 2 3 28 28 H 1.08997 * 109.47580 * 60.12232 * 1 2 3 29 29 H 1.09003 * 109.83670 * 52.69465 * 4 2 1 30 30 H 1.08998 * 109.74098 * 292.00138 * 4 2 1 31 31 H 0.97000 * 120.00152 * 355.02126 * 8 6 5 32 32 H 1.09007 * 109.46967 * 60.00119 * 9 8 6 33 33 H 1.08995 * 109.47374 * 300.00079 * 9 8 6 34 34 H 0.97006 * 120.00064 * 0.02562 * 12 10 9 35 35 H 0.97002 * 119.99962 * 0.02562 * 16 15 13 36 36 H 1.08992 * 109.47024 * 59.99972 * 23 21 5 37 37 H 1.09002 * 109.47252 * 180.02562 * 23 21 5 38 38 H 1.08999 * 109.46604 * 300.00099 * 23 21 5 39 39 H 1.09007 * 109.51194 * 67.61958 * 24 21 5 40 40 H 1.09003 * 109.51561 * 187.72378 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0418 -0.7305 1.2519 5 7 3.5012 -0.8762 1.1334 6 6 4.3194 -0.5043 2.1378 7 8 5.5251 -0.5483 1.9876 8 7 3.8009 -0.0835 3.3085 9 6 4.6868 0.2166 4.4361 10 6 3.8635 0.6642 5.6163 11 8 2.6557 0.7259 5.5248 12 7 4.4693 0.9949 6.7740 13 6 3.7203 1.4016 7.8478 14 1 2.6448 1.4574 7.7661 15 6 4.3449 1.7431 9.0411 16 7 5.6534 1.6757 9.1406 17 14 3.3244 2.2979 10.5041 18 1 2.3821 1.2166 10.8889 19 1 2.5576 3.5162 10.1392 20 1 4.2222 2.6015 11.6473 21 6 4.0407 -1.4456 -0.1116 22 1 5.1253 -1.3380 -0.1248 23 6 3.6687 -2.9269 -0.2043 24 6 3.4312 -0.6853 -1.2949 25 8 2.0075 -0.6762 -1.1656 26 1 -0.3633 -1.0277 0.0022 27 1 -0.3633 0.5157 0.8889 28 1 -0.3634 0.5119 -0.8910 29 1 1.5789 -1.7150 1.3208 30 1 1.8019 -0.1484 2.1417 31 1 2.8413 0.0205 3.4046 32 1 5.3781 1.0106 4.1537 33 1 5.2500 -0.6774 4.7037 34 1 5.4353 0.9452 6.8473 35 1 6.1834 1.3880 8.3808 36 1 2.5837 -3.0300 -0.2001 37 1 4.0702 -3.3453 -1.1273 38 1 4.0877 -3.4607 0.6486 39 1 3.8029 0.3394 -1.2996 40 1 3.7098 -1.1779 -2.2266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358271908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:22 Heat of formation + Delta-G solvation = -104.997956 kcal Electronic energy + Delta-G solvation = -23052.076028 eV Core-core repulsion = 19481.285281 eV Total energy + Delta-G solvation = -3570.790747 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74295 -39.00275 -38.17436 -35.09141 -34.82501 -34.18855 -33.26599 -31.28739 -30.56425 -27.50392 -26.59867 -26.40372 -24.30750 -22.63710 -21.35013 -20.00344 -19.36844 -18.52114 -18.04294 -16.95459 -16.28709 -16.11097 -15.75897 -15.42716 -15.18524 -14.83545 -14.41520 -14.35011 -14.05817 -13.73277 -13.38527 -13.22676 -12.62217 -12.53030 -12.47855 -12.35621 -12.07215 -11.96276 -11.71604 -11.37192 -11.34076 -11.03392 -10.73305 -10.30266 -10.26164 -10.02792 -9.95517 -9.69631 -9.01371 -8.70706 -8.49749 -8.18425 -6.86815 -4.01492 2.49464 3.20208 3.24927 3.29606 3.44493 3.49913 3.67240 3.86943 4.19677 4.40355 4.59829 4.68032 4.74067 4.78383 4.86842 5.11448 5.15128 5.19197 5.28122 5.33385 5.41686 5.46156 5.54628 5.65876 5.69376 5.78863 5.83038 5.86390 5.88458 6.02737 6.34098 6.61092 6.87621 6.92676 7.65201 7.94698 8.02725 8.43047 8.61231 8.65482 9.32071 9.65805 10.55989 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.029984 B = 0.003346 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.620829 B = 8366.984913 C = 9046.625523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 H 0.064 0.936 4 C 0.080 3.920 5 N -0.630 5.630 6 C 0.711 3.289 7 O -0.594 6.594 8 N -0.724 5.724 9 C 0.127 3.873 10 C 0.431 3.569 11 O -0.592 6.592 12 N -0.560 5.560 13 C -0.387 4.387 14 H 0.102 0.898 15 C -0.005 4.005 16 N -0.893 5.893 17 Si 1.093 2.907 18 H -0.283 1.283 19 H -0.283 1.283 20 H -0.278 1.278 21 C 0.120 3.880 22 H 0.109 0.891 23 C -0.156 4.156 24 C 0.054 3.946 25 O -0.375 6.375 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.406 0.594 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.380 0.620 35 H 0.264 0.736 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.670 -5.288 -18.486 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.016 3.984 3 H 0.082 0.918 4 C -0.044 4.044 5 N -0.369 5.369 6 C 0.412 3.588 7 O -0.473 6.473 8 N -0.384 5.384 9 C -0.001 4.001 10 C 0.217 3.783 11 O -0.478 6.478 12 N -0.197 5.197 13 C -0.516 4.516 14 H 0.119 0.881 15 C -0.209 4.209 16 N -0.531 5.531 17 Si 0.918 3.082 18 H -0.209 1.209 19 H -0.209 1.209 20 H -0.203 1.203 21 C 0.016 3.984 22 H 0.127 0.873 23 C -0.215 4.215 24 C -0.023 4.023 25 O -0.294 6.294 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.246 0.754 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.213 0.787 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.608 -4.841 -17.109 18.644 hybrid contribution 0.267 -0.412 -1.295 1.385 sum -5.341 -5.253 -18.404 19.871 Atomic orbital electron populations 1.21748 0.92091 1.03308 1.03069 1.22554 0.95574 0.95346 0.84925 0.91764 1.22487 0.80781 1.01864 0.99259 1.47315 1.05787 1.67319 1.16485 1.15720 0.84920 0.78076 0.80060 1.90889 1.12550 1.61917 1.81935 1.44931 1.11579 1.71329 1.10529 1.20791 0.92249 1.01560 0.85498 1.19655 0.88596 0.85625 0.84433 1.90485 1.14233 1.59806 1.83320 1.41850 1.08963 1.58105 1.10737 1.20568 0.94345 1.45526 0.91187 0.88063 1.26599 0.97472 0.96056 1.00772 1.70895 1.04979 1.43683 1.33505 0.83117 0.74207 0.76700 0.74172 1.20885 1.20881 1.20282 1.21730 1.00562 0.93311 0.82787 0.87299 1.22041 1.02496 0.94731 1.02189 1.23001 0.81209 1.00053 0.98056 1.87936 1.20844 1.77415 1.43192 0.91498 0.90456 0.91417 0.90381 0.89023 0.75405 0.89984 0.90096 0.78689 0.92497 0.91843 0.91408 0.92266 0.92630 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.57 37.16 0.36 -0.78 16 2 C 0.07 0.74 3.41 -26.36 -0.09 0.65 16 3 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 4 C 0.08 0.89 5.49 -3.32 -0.02 0.87 16 5 N -0.63 -8.38 2.71 -170.17 -0.46 -8.84 16 6 C 0.71 12.00 8.31 -86.92 -0.72 11.27 16 7 O -0.59 -11.70 15.82 5.29 0.08 -11.62 16 8 N -0.72 -12.54 5.44 -66.41 -0.36 -12.90 16 9 C 0.13 2.39 6.16 -5.19 -0.03 2.35 16 10 C 0.43 9.90 7.85 -10.99 -0.09 9.81 16 11 O -0.59 -15.15 15.24 5.55 0.08 -15.07 16 12 N -0.56 -13.77 5.28 -10.96 -0.06 -13.83 16 13 C -0.39 -10.58 9.68 -14.93 -0.14 -10.72 16 14 H 0.10 2.90 7.16 -52.48 -0.38 2.52 16 15 C -0.01 -0.14 5.50 -17.47 -0.10 -0.24 16 16 N -0.89 -24.53 13.68 55.50 0.76 -23.77 16 17 Si 1.09 23.55 29.92 -169.99 -5.09 18.46 16 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 C 0.12 1.35 3.25 -67.42 -0.22 1.13 16 22 H 0.11 1.35 7.06 -51.93 -0.37 0.98 16 23 C -0.16 -1.51 9.24 37.16 0.34 -1.17 16 24 C 0.05 0.52 6.36 37.31 0.24 0.75 16 25 O -0.38 -3.94 10.01 -35.23 -0.35 -4.30 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.81 7.65 -51.93 -0.40 0.41 16 30 H 0.09 1.05 5.77 -51.93 -0.30 0.75 16 31 H 0.41 6.86 4.99 -40.82 -0.20 6.66 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.38 8.66 6.73 -40.82 -0.27 8.39 16 35 H 0.26 6.97 6.78 -40.82 -0.28 6.70 16 36 H 0.06 0.62 7.21 -51.93 -0.37 0.25 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -32.92 329.00 -6.50 -39.42 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -5.59 Total: 13.56 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: -0.47 Total: 13.93 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.12 Total: -59.34 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.18 Total: -30.98 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.09 Total: 18.46 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.92 -6.50 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358271908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.583 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds