Wall clock time and date at job start Tue Mar 31 2020 03:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.55179 * 2 1 4 4 C 1.53715 * 109.44757 * 120.26521 * 2 1 3 5 5 N 1.47151 * 108.16134 * 172.37469 * 4 2 1 6 6 C 1.34777 * 120.97955 * 129.43374 * 5 4 2 7 7 O 1.21588 * 119.99565 * 184.92977 * 6 5 4 8 8 N 1.34774 * 120.00021 * 4.92948 * 6 5 4 9 9 C 1.46500 * 119.99673 * 175.02125 * 8 6 5 10 10 C 1.50701 * 109.46793 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00441 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99835 * 179.97438 * 10 9 8 13 13 C 1.37097 * 120.00185 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00099 * 359.97438 * 13 12 10 15 15 C 1.38948 * 120.00149 * 180.02562 * 13 12 10 16 16 N 1.31404 * 120.00408 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99937 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47275 * 59.99708 * 17 15 13 19 19 H 1.48503 * 109.46991 * 299.99579 * 17 15 13 20 20 H 1.48496 * 109.47182 * 179.97438 * 17 15 13 21 21 C 1.47152 * 118.03507 * 309.15978 * 5 4 2 22 22 H 1.09005 * 109.68085 * 170.55009 * 21 5 4 23 23 C 1.53005 * 109.68135 * 291.06316 * 21 5 4 24 24 C 1.53287 * 108.38849 * 50.78500 * 21 5 4 25 25 O 1.42961 * 109.51152 * 239.87924 * 2 1 3 26 26 H 1.09002 * 109.46680 * 180.12464 * 1 2 3 27 27 H 1.09001 * 109.46972 * 300.11899 * 1 2 3 28 28 H 1.08997 * 109.47580 * 60.12232 * 1 2 3 29 29 H 1.09003 * 109.83670 * 52.69465 * 4 2 1 30 30 H 1.08998 * 109.74098 * 292.00138 * 4 2 1 31 31 H 0.97000 * 120.00152 * 355.02126 * 8 6 5 32 32 H 1.09007 * 109.46967 * 60.00119 * 9 8 6 33 33 H 1.08995 * 109.47374 * 300.00079 * 9 8 6 34 34 H 0.97006 * 120.00064 * 0.02562 * 12 10 9 35 35 H 0.97002 * 119.99962 * 0.02562 * 16 15 13 36 36 H 1.08992 * 109.47024 * 59.99972 * 23 21 5 37 37 H 1.09002 * 109.47252 * 180.02562 * 23 21 5 38 38 H 1.08999 * 109.46604 * 300.00099 * 23 21 5 39 39 H 1.09007 * 109.51194 * 67.61958 * 24 21 5 40 40 H 1.09003 * 109.51561 * 187.72378 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0418 -0.7305 1.2519 5 7 3.5012 -0.8762 1.1334 6 6 4.3194 -0.5043 2.1378 7 8 5.5251 -0.5483 1.9876 8 7 3.8009 -0.0835 3.3085 9 6 4.6868 0.2166 4.4361 10 6 3.8635 0.6642 5.6163 11 8 2.6557 0.7259 5.5248 12 7 4.4693 0.9949 6.7740 13 6 3.7203 1.4016 7.8478 14 1 2.6448 1.4574 7.7661 15 6 4.3449 1.7431 9.0411 16 7 5.6534 1.6757 9.1406 17 14 3.3244 2.2979 10.5041 18 1 2.3821 1.2166 10.8889 19 1 2.5576 3.5162 10.1392 20 1 4.2222 2.6015 11.6473 21 6 4.0407 -1.4456 -0.1116 22 1 5.1253 -1.3380 -0.1248 23 6 3.6687 -2.9269 -0.2043 24 6 3.4312 -0.6853 -1.2949 25 8 2.0075 -0.6762 -1.1656 26 1 -0.3633 -1.0277 0.0022 27 1 -0.3633 0.5157 0.8889 28 1 -0.3634 0.5119 -0.8910 29 1 1.5789 -1.7150 1.3208 30 1 1.8019 -0.1484 2.1417 31 1 2.8413 0.0205 3.4046 32 1 5.3781 1.0106 4.1537 33 1 5.2500 -0.6774 4.7037 34 1 5.4353 0.9452 6.8473 35 1 6.1834 1.3880 8.3808 36 1 2.5837 -3.0300 -0.2001 37 1 4.0702 -3.3453 -1.1273 38 1 4.0877 -3.4607 0.6486 39 1 3.8029 0.3394 -1.2996 40 1 3.7098 -1.1779 -2.2266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358271908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:21 Heat of formation + Delta-G solvation = -129.245913 kcal Electronic energy + Delta-G solvation = -23053.127498 eV Core-core repulsion = 19481.285281 eV Total energy + Delta-G solvation = -3571.842217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.88212 -40.52674 -39.60545 -36.68191 -36.06469 -35.68466 -34.27628 -33.26157 -31.51510 -29.03197 -27.42378 -27.31765 -26.21524 -23.55346 -22.46446 -21.75210 -20.57740 -20.10468 -19.62981 -17.97382 -17.78696 -17.31572 -17.10027 -16.76672 -16.46898 -16.00638 -15.95761 -15.54493 -15.50145 -15.27375 -14.56149 -14.38732 -14.02096 -13.66281 -13.41341 -13.25775 -13.21365 -13.17587 -12.80936 -12.75302 -12.60370 -12.14462 -11.96157 -11.91515 -11.63242 -11.59332 -11.39198 -11.08246 -10.64618 -10.41130 -10.19609 -9.56254 -8.97643 -6.13716 1.30737 1.46011 1.56096 1.83716 1.84950 1.93890 2.37341 2.64155 2.68946 2.96170 3.12133 3.57051 3.75997 3.87379 3.93785 3.97717 4.06655 4.26677 4.29747 4.31193 4.35477 4.47914 4.64748 4.68231 4.71342 4.84603 4.92314 4.97948 5.15628 5.21537 5.28216 5.35912 5.56595 5.73415 5.88769 6.10206 6.44617 6.59921 6.72667 7.28771 7.35215 7.72000 8.49022 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.029984 B = 0.003346 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.620829 B = 8366.984913 C = 9046.625523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.076 3.924 3 H 0.058 0.942 4 C 0.077 3.923 5 N -0.626 5.626 6 C 0.708 3.292 7 O -0.626 6.626 8 N -0.726 5.726 9 C 0.141 3.859 10 C 0.438 3.562 11 O -0.617 6.617 12 N -0.571 5.571 13 C -0.413 4.413 14 H 0.082 0.918 15 C -0.038 4.038 16 N -0.912 5.912 17 Si 1.135 2.865 18 H -0.270 1.270 19 H -0.270 1.270 20 H -0.275 1.275 21 C 0.113 3.887 22 H 0.095 0.905 23 C -0.148 4.148 24 C 0.058 3.942 25 O -0.379 6.379 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.408 0.592 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.387 0.613 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.050 0.950 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 -5.667 -19.567 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.018 3.982 3 H 0.076 0.924 4 C -0.046 4.046 5 N -0.363 5.363 6 C 0.410 3.590 7 O -0.507 6.507 8 N -0.385 5.385 9 C 0.012 3.988 10 C 0.225 3.775 11 O -0.505 6.505 12 N -0.209 5.209 13 C -0.542 4.542 14 H 0.100 0.900 15 C -0.237 4.237 16 N -0.550 5.550 17 Si 0.954 3.046 18 H -0.196 1.196 19 H -0.195 1.195 20 H -0.200 1.200 21 C 0.010 3.990 22 H 0.113 0.887 23 C -0.206 4.206 24 C -0.019 4.019 25 O -0.298 6.298 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.249 0.751 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.222 0.778 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.495 -5.240 -18.246 20.064 hybrid contribution 0.526 -0.334 -1.082 1.249 sum -5.969 -5.573 -19.328 20.983 Atomic orbital electron populations 1.21745 0.90388 1.03895 1.03759 1.22589 0.96847 0.94665 0.84130 0.92422 1.22660 0.79382 1.02647 0.99885 1.47441 1.06503 1.66220 1.16148 1.15830 0.84840 0.77993 0.80371 1.90863 1.13988 1.63314 1.82547 1.44874 1.11437 1.71752 1.10477 1.20609 0.91728 1.02253 0.84196 1.20331 0.88556 0.83731 0.84868 1.90465 1.15710 1.60347 1.83956 1.41877 1.09284 1.58837 1.10863 1.20599 0.93870 1.47082 0.92627 0.89998 1.27922 0.97755 0.95213 1.02859 1.70967 1.05582 1.44769 1.33669 0.82616 0.73331 0.77165 0.71448 1.19551 1.19544 1.19953 1.21969 0.99991 0.94612 0.82443 0.88676 1.21986 1.02543 0.93292 1.02808 1.23084 0.80640 0.99874 0.98329 1.87944 1.21257 1.77377 1.43189 0.90954 0.89784 0.90741 0.89258 0.89561 0.75146 0.88956 0.88902 0.77847 0.92837 0.91669 0.88921 0.93809 0.93122 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.57 71.98 0.69 -1.24 16 2 C 0.08 1.39 3.41 30.83 0.11 1.50 16 3 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 4 C 0.08 1.62 5.49 86.50 0.47 2.09 16 5 N -0.63 -16.11 2.71 -810.57 -2.20 -18.30 16 6 C 0.71 23.60 8.31 179.05 1.49 25.09 16 7 O -0.63 -24.53 15.82 -3.99 -0.06 -24.59 16 8 N -0.73 -24.81 5.44 -482.29 -2.62 -27.43 16 9 C 0.14 5.20 6.16 85.63 0.53 5.73 16 10 C 0.44 20.14 7.85 87.66 0.69 20.83 16 11 O -0.62 -31.73 15.24 -3.04 -0.05 -31.78 16 12 N -0.57 -28.31 5.28 -306.99 -1.62 -29.93 16 13 C -0.41 -22.76 9.68 84.04 0.81 -21.95 16 14 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 15 C -0.04 -2.03 5.50 84.93 0.47 -1.56 16 16 N -0.91 -50.03 13.68 21.66 0.30 -49.73 16 17 Si 1.14 46.79 29.92 68.60 2.05 48.85 16 18 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 19 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 21 C 0.11 2.39 3.25 44.97 0.15 2.54 16 22 H 0.10 2.30 7.06 -2.38 -0.02 2.29 16 23 C -0.15 -2.59 9.24 71.98 0.66 -1.93 16 24 C 0.06 0.98 6.36 72.08 0.46 1.44 16 25 O -0.38 -7.11 10.01 -148.98 -1.49 -8.60 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.69 7.65 -2.39 -0.02 1.67 16 30 H 0.09 1.91 5.77 -2.39 -0.01 1.90 16 31 H 0.41 13.67 4.99 -92.71 -0.46 13.20 16 32 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 33 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.39 17.84 6.73 -92.70 -0.62 17.21 16 35 H 0.26 13.89 6.78 -92.71 -0.63 13.26 16 36 H 0.06 1.13 7.21 -2.39 -0.02 1.11 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.05 0.91 8.14 -2.38 -0.02 0.90 16 40 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -69.77 329.00 0.95 -68.81 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: 0.12 Total: 40.18 kcal Atomic # 6 Polarization: 26.01 SS G_CDS: 6.52 Total: 32.53 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -6.14 Total: -125.40 kcal Atomic # 8 Polarization: -63.37 SS G_CDS: -1.60 Total: -64.97 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.05 Total: 48.85 kcal Total: -69.77 0.95 -68.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358271908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.434 kcal (2) G-P(sol) polarization free energy of solvation -69.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds