Wall clock time and date at job start Tue Mar 31 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99998 * 2 1 4 4 H 1.48496 * 109.47503 * 240.00266 * 3 2 1 5 5 H 1.48501 * 109.46931 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46780 * 120.00237 * 3 2 1 7 7 C 1.38948 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00251 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00452 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99294 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99974 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.46579 * 179.97438 * 12 10 9 14 14 C 1.34775 * 119.99996 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99783 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00512 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00617 * 184.84863 * 16 14 13 18 18 C 1.52998 * 110.54085 * 297.24046 * 17 16 14 19 19 O 1.42898 * 109.47027 * 307.55913 * 18 17 16 20 20 C 1.54269 * 110.48264 * 59.84800 * 17 16 14 21 21 C 1.53873 * 106.59906 * 95.07108 * 20 17 16 22 22 C 1.54265 * 106.59861 * 359.97438 * 21 20 17 23 23 C 1.54883 * 110.49197 * 174.62085 * 17 16 14 24 24 H 0.97002 * 120.00054 * 0.02562 * 1 2 3 25 25 H 0.97006 * 119.99665 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.46945 * 60.00457 * 12 10 9 27 27 H 1.08996 * 109.47219 * 300.00168 * 12 10 9 28 28 H 0.97006 * 120.00439 * 359.97438 * 13 12 10 29 29 H 0.97001 * 119.99900 * 4.85554 * 16 14 13 30 30 H 1.09002 * 109.47312 * 67.55881 * 18 17 16 31 31 H 1.08996 * 109.47591 * 187.55827 * 18 17 16 32 32 H 0.96700 * 114.00665 * 179.97438 * 19 18 17 33 33 H 1.09003 * 110.03346 * 335.78435 * 20 17 16 34 34 H 1.08998 * 110.03436 * 214.35593 * 20 17 16 35 35 H 1.09000 * 110.03415 * 119.28300 * 21 20 17 36 36 H 1.08996 * 110.03207 * 240.71534 * 21 20 17 37 37 H 1.09006 * 110.48847 * 142.28572 * 22 21 20 38 38 H 1.08998 * 110.48606 * 264.93362 * 22 21 20 39 39 H 1.08995 * 110.76086 * 160.94877 * 23 17 16 40 40 H 1.09004 * 110.75333 * 37.58302 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6966 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1958 -5.9764 -0.0016 14 6 1.7466 -7.2471 -0.0017 15 8 0.5512 -7.4693 -0.0018 16 7 2.6224 -8.2715 -0.0016 17 6 2.1376 -9.6498 -0.1089 18 6 1.2606 -10.0055 1.0933 19 8 1.9639 -9.7071 2.3009 20 6 1.3559 -9.8462 -1.4243 21 6 2.3551 -10.4112 -2.4491 22 6 3.7091 -10.5377 -1.7210 23 6 3.3268 -10.6355 -0.2229 24 1 -0.4850 0.8401 -0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6175 -4.9204 -0.8914 27 1 0.6168 -4.9208 0.8886 28 1 3.1495 -5.7991 -0.0019 29 1 3.5738 -8.0962 0.0696 30 1 0.3396 -9.4237 1.0560 31 1 1.0203 -11.0683 1.0660 32 1 1.4667 -9.9076 3.1056 33 1 0.9644 -8.8904 -1.7723 34 1 0.5390 -10.5514 -1.2714 35 1 2.0230 -11.3905 -2.7936 36 1 2.4484 -9.7295 -3.2945 37 1 4.2314 -11.4395 -2.0406 38 1 4.3234 -9.6556 -1.9018 39 1 3.0147 -11.6484 0.0311 40 1 4.1556 -10.3156 0.4087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358282328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:54 Heat of formation + Delta-G solvation = -125.703761 kcal Electronic energy + Delta-G solvation = -22845.526252 eV Core-core repulsion = 19273.837634 eV Total energy + Delta-G solvation = -3571.688618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43328 -38.64815 -37.72329 -36.19459 -34.34879 -33.59996 -33.17821 -31.34095 -29.51724 -28.96105 -27.19141 -24.59083 -24.29431 -21.22136 -20.77291 -19.70810 -19.26537 -18.24264 -17.89288 -17.32868 -16.30049 -15.74955 -15.51457 -15.19716 -15.05718 -14.67218 -14.52936 -14.14091 -14.04094 -13.57849 -13.46310 -13.20002 -12.51690 -12.13176 -12.07727 -11.68634 -11.60972 -11.58611 -11.40513 -11.27295 -11.08329 -10.94714 -10.63572 -10.48866 -10.29395 -10.20045 -9.59817 -9.57663 -8.98388 -8.58539 -8.50229 -8.06907 -6.48681 -3.90639 2.89698 3.15716 3.23054 3.27291 3.49932 3.79153 4.01701 4.11272 4.36005 4.42507 4.59140 4.74964 4.94967 5.09181 5.20040 5.24703 5.31781 5.33897 5.38493 5.52659 5.63021 5.71834 5.79598 5.83807 5.94137 5.99868 6.05590 6.05953 6.12602 6.23253 6.74885 6.85208 7.23016 7.48356 7.57204 7.95365 8.35846 8.48713 8.91607 9.07542 9.42828 9.91075 10.68260 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033173 B = 0.003070 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.845876 B = 9118.563544 C = 9300.734267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.550 5.550 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.130 3.870 13 N -0.726 5.726 14 C 0.710 3.290 15 O -0.600 6.600 16 N -0.727 5.727 17 C 0.199 3.801 18 C 0.067 3.933 19 O -0.566 6.566 20 C -0.127 4.127 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.120 4.120 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.406 0.594 29 H 0.396 0.604 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.375 0.625 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 -21.172 -0.788 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.122 0.878 9 N -0.185 5.185 10 C 0.215 3.785 11 O -0.484 6.484 12 C 0.002 3.998 13 N -0.383 5.383 14 C 0.410 3.590 15 O -0.480 6.480 16 N -0.382 5.382 17 C 0.111 3.889 18 C -0.012 4.012 19 O -0.371 6.371 20 C -0.166 4.166 21 C -0.161 4.161 22 C -0.164 4.164 23 C -0.157 4.157 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.243 0.757 29 H 0.230 0.770 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.221 0.779 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.557 -20.971 -1.243 21.162 hybrid contribution 0.134 0.886 0.446 1.001 sum 2.691 -20.085 -0.797 20.280 Atomic orbital electron populations 1.69609 1.05997 1.28576 1.49413 1.25315 0.95657 0.99889 0.96844 0.85877 0.78771 0.80195 0.79139 1.19794 1.20874 1.19795 1.19680 0.93428 0.82057 1.48298 0.87767 1.41781 1.09461 1.04435 1.62809 1.19801 0.88310 0.85053 0.85364 1.90491 1.13781 1.86888 1.57256 1.20740 0.91230 0.84888 1.02949 1.44784 1.11128 1.03394 1.78968 1.15794 0.85230 0.80407 0.77555 1.90842 1.14128 1.84218 1.58765 1.44878 1.09113 1.04212 1.79998 1.20863 0.93928 0.80866 0.93239 1.22659 0.95840 0.98240 0.84430 1.86462 1.45941 1.89165 1.15503 1.22474 0.97813 1.02712 0.93587 1.22129 0.94882 1.00805 0.98269 1.22407 0.97341 1.01867 0.94767 1.22739 0.97404 0.98828 0.96776 0.91571 0.77039 0.90167 0.90173 0.75718 0.77013 0.91271 0.93670 0.77882 0.89832 0.91054 0.91820 0.91737 0.91485 0.91383 0.90080 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.31 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.83 5.29 -10.96 -0.06 -13.89 16 10 C 0.43 10.04 7.85 -10.99 -0.09 9.95 16 11 O -0.60 -15.55 15.24 5.54 0.08 -15.46 16 12 C 0.13 2.49 6.15 -5.20 -0.03 2.46 16 13 N -0.73 -12.66 5.53 -66.42 -0.37 -13.03 16 14 C 0.71 11.78 7.73 -86.92 -0.67 11.11 16 15 O -0.60 -11.35 13.34 5.28 0.07 -11.28 16 16 N -0.73 -9.45 4.86 -50.87 -0.25 -9.70 16 17 C 0.20 2.22 0.55 -130.16 -0.07 2.15 16 18 C 0.07 0.76 5.59 37.16 0.21 0.97 16 19 O -0.57 -6.56 13.32 -35.23 -0.47 -7.03 16 20 C -0.13 -1.40 5.67 -25.61 -0.15 -1.54 16 21 C -0.12 -1.09 6.80 -25.61 -0.17 -1.27 16 22 C -0.13 -1.02 6.79 -25.06 -0.17 -1.19 16 23 C -0.12 -1.03 5.78 -24.73 -0.14 -1.18 16 24 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.40 9.58 7.90 -40.82 -0.32 9.26 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.41 6.99 7.46 -40.82 -0.30 6.68 16 29 H 0.40 4.54 8.49 -40.82 -0.35 4.19 16 30 H 0.07 0.95 6.54 -51.93 -0.34 0.61 16 31 H 0.05 0.40 8.02 -51.93 -0.42 -0.01 16 32 H 0.38 2.86 9.12 45.56 0.42 3.28 16 33 H 0.08 1.17 6.44 -51.93 -0.33 0.83 16 34 H 0.07 0.70 7.84 -51.93 -0.41 0.30 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.61 7.97 -51.93 -0.41 0.20 16 40 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -32.41 331.75 -6.75 -39.16 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -4.93 Total: 20.43 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: -1.53 Total: 13.52 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.05 Total: -60.03 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.31 Total: -33.77 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.41 -6.75 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358282328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.541 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds