Wall clock time and date at job start Tue Mar 31 2020 02:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99998 * 2 1 4 4 H 1.48496 * 109.47503 * 240.00266 * 3 2 1 5 5 H 1.48501 * 109.46931 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46780 * 120.00237 * 3 2 1 7 7 C 1.38948 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00251 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00452 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99294 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99974 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.46579 * 179.97438 * 12 10 9 14 14 C 1.34775 * 119.99996 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99783 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00512 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00617 * 184.84863 * 16 14 13 18 18 C 1.52998 * 110.54085 * 297.24046 * 17 16 14 19 19 O 1.42898 * 109.47027 * 307.55913 * 18 17 16 20 20 C 1.54269 * 110.48264 * 59.84800 * 17 16 14 21 21 C 1.53873 * 106.59906 * 95.07108 * 20 17 16 22 22 C 1.54265 * 106.59861 * 359.97438 * 21 20 17 23 23 C 1.54883 * 110.49197 * 174.62085 * 17 16 14 24 24 H 0.97002 * 120.00054 * 0.02562 * 1 2 3 25 25 H 0.97006 * 119.99665 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.46945 * 60.00457 * 12 10 9 27 27 H 1.08996 * 109.47219 * 300.00168 * 12 10 9 28 28 H 0.97006 * 120.00439 * 359.97438 * 13 12 10 29 29 H 0.97001 * 119.99900 * 4.85554 * 16 14 13 30 30 H 1.09002 * 109.47312 * 67.55881 * 18 17 16 31 31 H 1.08996 * 109.47591 * 187.55827 * 18 17 16 32 32 H 0.96700 * 114.00665 * 179.97438 * 19 18 17 33 33 H 1.09003 * 110.03346 * 335.78435 * 20 17 16 34 34 H 1.08998 * 110.03436 * 214.35593 * 20 17 16 35 35 H 1.09000 * 110.03415 * 119.28300 * 21 20 17 36 36 H 1.08996 * 110.03207 * 240.71534 * 21 20 17 37 37 H 1.09006 * 110.48847 * 142.28572 * 22 21 20 38 38 H 1.08998 * 110.48606 * 264.93362 * 22 21 20 39 39 H 1.08995 * 110.76086 * 160.94877 * 23 17 16 40 40 H 1.09004 * 110.75333 * 37.58302 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6966 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1958 -5.9764 -0.0016 14 6 1.7466 -7.2471 -0.0017 15 8 0.5512 -7.4693 -0.0018 16 7 2.6224 -8.2715 -0.0016 17 6 2.1376 -9.6498 -0.1089 18 6 1.2606 -10.0055 1.0933 19 8 1.9639 -9.7071 2.3009 20 6 1.3559 -9.8462 -1.4243 21 6 2.3551 -10.4112 -2.4491 22 6 3.7091 -10.5377 -1.7210 23 6 3.3268 -10.6355 -0.2229 24 1 -0.4850 0.8401 -0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6175 -4.9204 -0.8914 27 1 0.6168 -4.9208 0.8886 28 1 3.1495 -5.7991 -0.0019 29 1 3.5738 -8.0962 0.0696 30 1 0.3396 -9.4237 1.0560 31 1 1.0203 -11.0683 1.0660 32 1 1.4667 -9.9076 3.1056 33 1 0.9644 -8.8904 -1.7723 34 1 0.5390 -10.5514 -1.2714 35 1 2.0230 -11.3905 -2.7936 36 1 2.4484 -9.7295 -3.2945 37 1 4.2314 -11.4395 -2.0406 38 1 4.3234 -9.6556 -1.9018 39 1 3.0147 -11.6484 0.0311 40 1 4.1556 -10.3156 0.4087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358282328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:53 Heat of formation + Delta-G solvation = -153.174815 kcal Electronic energy + Delta-G solvation = -22846.717486 eV Core-core repulsion = 19273.837634 eV Total energy + Delta-G solvation = -3572.879852 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58055 -40.29326 -39.04447 -37.03442 -36.21525 -35.20514 -34.28776 -33.35659 -30.50901 -29.71749 -28.77333 -26.35285 -25.25906 -22.45452 -21.51889 -21.35417 -20.53990 -20.01045 -19.39995 -18.19265 -17.43654 -17.36173 -16.88617 -16.55653 -16.28688 -16.11506 -15.68987 -15.62283 -15.51333 -15.04050 -14.71014 -14.10055 -13.91420 -13.60811 -13.53774 -13.34405 -12.90576 -12.64354 -12.47038 -12.42171 -12.14902 -12.12762 -11.98909 -11.76363 -11.56175 -11.37308 -11.28007 -10.65717 -10.55305 -10.27731 -10.09807 -9.74272 -8.50751 -6.01205 1.38300 1.42377 1.53110 1.66739 1.90387 2.20321 2.29083 3.04942 3.16348 3.23076 3.32355 3.66740 3.71669 4.04869 4.21857 4.33123 4.41399 4.46554 4.48875 4.53589 4.55428 4.65611 4.77882 4.89245 4.90381 5.07348 5.10157 5.26199 5.29618 5.35912 5.40534 5.49285 5.73782 5.92216 6.01712 6.48478 6.87870 7.03447 7.09530 7.43393 7.62141 7.94791 8.66040 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033173 B = 0.003070 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.845876 B = 9118.563544 C = 9300.734267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.145 3.855 13 N -0.728 5.728 14 C 0.708 3.292 15 O -0.624 6.624 16 N -0.714 5.714 17 C 0.186 3.814 18 C 0.069 3.931 19 O -0.581 6.581 20 C -0.127 4.127 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.110 4.110 24 H 0.280 0.720 25 H 0.399 0.601 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.407 0.593 29 H 0.404 0.596 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.391 0.609 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 -22.435 -0.813 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.512 6.512 12 C 0.017 3.983 13 N -0.386 5.386 14 C 0.408 3.592 15 O -0.506 6.506 16 N -0.369 5.369 17 C 0.099 3.901 18 C -0.010 4.010 19 O -0.388 6.388 20 C -0.165 4.165 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.148 4.148 24 H 0.090 0.910 25 H 0.233 0.767 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.244 0.756 29 H 0.239 0.761 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.239 0.761 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.221 -22.278 -1.259 22.545 hybrid contribution -0.097 1.194 0.471 1.287 sum 3.124 -21.085 -0.788 21.329 Atomic orbital electron populations 1.69678 1.07026 1.29715 1.49236 1.26136 0.96539 1.02683 0.95728 0.84924 0.77723 0.76190 0.79121 1.19444 1.19573 1.19485 1.19715 0.92986 0.83582 1.50552 0.89587 1.41825 1.09559 1.04562 1.63486 1.20442 0.88128 0.85938 0.83485 1.90465 1.15204 1.87567 1.57993 1.20520 0.90970 0.83122 1.03734 1.44739 1.10804 1.03458 1.79561 1.15910 0.85313 0.80533 0.77420 1.90829 1.15339 1.84506 1.59885 1.44881 1.09092 1.04332 1.78603 1.21207 0.95353 0.80162 0.93378 1.22626 0.94476 0.99406 0.84464 1.86414 1.46611 1.89479 1.16342 1.22448 0.98714 1.01297 0.94087 1.22121 0.94862 1.01396 0.97386 1.22405 0.96789 1.02620 0.94194 1.22726 0.96082 0.98800 0.97168 0.91042 0.76721 0.89227 0.89390 0.75579 0.76069 0.94307 0.90738 0.76069 0.93312 0.90064 0.89902 0.92650 0.89384 0.92067 0.88188 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.21 13.05 21.66 0.28 -48.92 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 3 Si 1.00 42.09 29.55 68.60 2.03 44.12 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.34 -18.94 9.68 84.04 0.81 -18.13 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.62 5.29 -306.98 -1.62 -30.24 16 10 C 0.43 20.54 7.85 87.66 0.69 21.23 16 11 O -0.62 -32.99 15.24 -3.08 -0.05 -33.04 16 12 C 0.15 5.57 6.15 85.63 0.53 6.10 16 13 N -0.73 -25.44 5.53 -482.31 -2.67 -28.11 16 14 C 0.71 23.49 7.73 179.06 1.38 24.88 16 15 O -0.62 -23.84 13.34 -4.00 -0.05 -23.89 16 16 N -0.71 -18.13 4.86 -433.12 -2.11 -20.24 16 17 C 0.19 3.90 0.55 4.68 0.00 3.90 16 18 C 0.07 1.47 5.59 71.98 0.40 1.88 16 19 O -0.58 -12.61 13.32 -148.98 -1.98 -14.59 16 20 C -0.13 -2.67 5.67 31.32 0.18 -2.49 16 21 C -0.12 -1.91 6.80 31.32 0.21 -1.69 16 22 C -0.12 -1.66 6.79 31.68 0.22 -1.44 16 23 C -0.11 -1.60 5.78 31.89 0.18 -1.42 16 24 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 25 H 0.40 19.64 7.90 -92.70 -0.73 18.90 16 26 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 27 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 28 H 0.41 14.06 7.46 -92.70 -0.69 13.37 16 29 H 0.40 8.90 8.49 -92.71 -0.79 8.11 16 30 H 0.04 1.07 6.54 -2.39 -0.02 1.05 16 31 H 0.07 1.14 8.02 -2.39 -0.02 1.12 16 32 H 0.39 5.42 9.12 -74.06 -0.68 4.75 16 33 H 0.05 1.38 6.44 -2.39 -0.02 1.36 16 34 H 0.08 1.51 7.84 -2.39 -0.02 1.49 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 1.13 7.97 -2.39 -0.02 1.11 16 40 H 0.08 1.15 8.06 -2.38 -0.02 1.13 16 Total: -1.00 -69.48 331.75 -2.88 -72.35 By element: Atomic # 1 Polarization: 51.61 SS G_CDS: -1.78 Total: 49.83 kcal Atomic # 6 Polarization: 27.66 SS G_CDS: 5.07 Total: 32.73 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -6.11 Total: -127.51 kcal Atomic # 8 Polarization: -69.44 SS G_CDS: -2.08 Total: -71.52 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -69.48 -2.88 -72.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358282328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.822 kcal (2) G-P(sol) polarization free energy of solvation -69.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds