Wall clock time and date at job start Tue Mar 31 2020 03:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.45781 * 2 1 4 4 C 1.53038 * 109.46012 * 119.96676 * 2 1 3 5 5 C 1.53197 * 109.31208 * 181.38338 * 4 2 1 6 6 N 1.46921 * 108.77314 * 305.36422 * 5 4 2 7 7 C 1.34776 * 120.62961 * 233.58023 * 6 5 4 8 8 O 1.21591 * 119.99802 * 354.97288 * 7 6 5 9 9 N 1.34770 * 120.00236 * 174.96222 * 7 6 5 10 10 C 1.46502 * 120.00181 * 185.07746 * 9 7 6 11 11 C 1.50704 * 109.47332 * 180.02562 * 10 9 7 12 12 O 1.21298 * 119.99609 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00045 * 179.97438 * 11 10 9 14 14 C 1.37100 * 119.99563 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00268 * 359.97438 * 14 13 11 16 16 C 1.38948 * 119.99360 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00592 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99669 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47134 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47014 * 119.99958 * 18 16 14 21 21 H 1.48495 * 109.47373 * 239.99697 * 18 16 14 22 22 C 1.46926 * 118.74123 * 53.60949 * 6 5 4 23 23 C 1.53044 * 109.45870 * 240.03117 * 2 1 3 24 24 H 1.08997 * 109.52695 * 298.58625 * 23 2 1 25 25 O 1.42909 * 109.49598 * 58.66206 * 23 2 1 26 26 H 1.08998 * 109.47112 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46832 * 299.96823 * 1 2 3 28 28 H 1.09006 * 109.47036 * 59.96940 * 1 2 3 29 29 H 1.08992 * 109.50255 * 61.42810 * 4 2 1 30 30 H 1.09007 * 109.49425 * 301.33139 * 4 2 1 31 31 H 1.08994 * 109.58281 * 185.57288 * 5 4 2 32 32 H 1.09005 * 109.58406 * 65.14987 * 5 4 2 33 33 H 0.97006 * 120.00012 * 5.08359 * 9 7 6 34 34 H 1.08998 * 109.46918 * 300.00364 * 10 9 7 35 35 H 1.08997 * 109.47308 * 60.00145 * 10 9 7 36 36 H 0.96997 * 119.99902 * 0.02562 * 13 11 10 37 37 H 0.97004 * 120.00590 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.58835 * 66.17639 * 22 6 5 39 39 H 1.08999 * 109.58433 * 186.60205 * 22 6 5 40 40 H 0.96696 * 114.00090 * 179.83725 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6886 1.2642 6 7 4.0678 -1.2489 -0.0001 7 6 4.9621 -2.2572 -0.0001 8 8 5.4347 -2.6506 1.0489 9 7 5.3323 -2.8296 -1.1627 10 6 6.2176 -3.9968 -1.1553 11 6 6.4766 -4.4399 -2.5722 12 8 5.9717 -3.8394 -3.4973 13 7 7.2701 -5.5028 -2.8115 14 6 7.5061 -5.9055 -4.1006 15 1 7.0558 -5.3713 -4.9242 16 6 8.3237 -7.0015 -4.3473 17 7 8.8711 -7.6517 -3.3452 18 14 8.6447 -7.5507 -6.1037 19 1 7.9179 -6.6583 -7.0421 20 1 10.1013 -7.4832 -6.3851 21 1 8.1708 -8.9469 -6.2802 22 6 3.5713 -0.6886 -1.2643 23 6 2.0399 -0.7208 -1.2501 24 1 1.6978 -1.7557 -1.2389 25 8 1.5381 -0.0653 -2.4166 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5133 0.8903 28 1 -0.3633 0.5143 -0.8898 29 1 1.6978 -1.7555 1.2384 30 1 1.6573 -0.2206 2.1398 31 1 3.9417 -1.2845 2.0984 32 1 3.9143 0.3410 1.3672 33 1 5.0125 -2.4687 -2.0044 34 1 7.1620 -3.7334 -0.6789 35 1 5.7450 -4.8078 -0.6012 36 1 7.6742 -5.9827 -2.0718 37 1 9.4417 -8.4172 -3.5174 38 1 3.9142 0.3408 -1.3675 39 1 3.9416 -1.2846 -2.0984 40 1 1.8240 -0.4682 -3.2479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358282410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:14 Heat of formation + Delta-G solvation = -118.245511 kcal Electronic energy + Delta-G solvation = -22828.844486 eV Core-core repulsion = 19257.479282 eV Total energy + Delta-G solvation = -3571.365204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.54350 -38.76136 -38.03150 -35.84661 -34.54736 -34.00759 -33.50998 -31.40418 -30.29357 -28.54255 -27.19251 -24.60105 -23.61338 -23.05448 -20.79250 -19.73274 -19.52931 -18.43921 -17.89577 -17.43759 -16.29805 -15.73425 -15.59537 -15.19114 -14.83015 -14.63875 -14.44295 -14.11521 -14.09092 -13.68307 -13.55591 -13.13703 -12.90182 -12.58117 -12.38451 -12.12436 -12.00479 -11.78064 -11.65156 -11.26552 -11.16060 -10.94748 -10.66402 -10.42836 -10.40344 -10.34582 -9.95078 -9.67091 -8.97271 -8.65780 -8.48986 -8.12436 -6.53593 -3.95756 2.62052 3.08499 3.21050 3.27490 3.29792 3.72168 3.76374 4.05385 4.17728 4.41503 4.48009 4.62984 4.83870 4.88302 4.97984 5.13732 5.15205 5.20339 5.37303 5.46244 5.51269 5.57626 5.70733 5.75717 5.75934 5.89680 5.98113 6.04244 6.05564 6.10358 6.39528 6.70715 6.97070 7.38674 7.44040 7.90234 8.09152 8.42509 8.71527 9.02367 9.37097 9.84613 10.63302 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028827 B = 0.003272 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.090769 B = 8555.961469 C = 9288.769547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.078 0.922 4 C -0.130 4.130 5 C 0.128 3.872 6 N -0.628 5.628 7 C 0.709 3.291 8 O -0.593 6.593 9 N -0.725 5.725 10 C 0.127 3.873 11 C 0.429 3.571 12 O -0.600 6.600 13 N -0.548 5.548 14 C -0.305 4.305 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.894 5.894 18 Si 0.932 3.068 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.079 3.921 23 C 0.097 3.903 24 H 0.061 0.939 25 O -0.562 6.562 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.405 0.595 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.713 12.906 7.046 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.096 0.904 4 C -0.168 4.168 5 C 0.005 3.995 6 N -0.367 5.367 7 C 0.410 3.590 8 O -0.472 6.472 9 N -0.385 5.385 10 C -0.002 4.002 11 C 0.214 3.786 12 O -0.487 6.487 13 N -0.183 5.183 14 C -0.434 4.434 15 H 0.124 0.876 16 C -0.177 4.177 17 N -0.534 5.534 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.046 4.046 23 C 0.037 3.963 24 H 0.079 0.921 25 O -0.367 6.367 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.245 0.755 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -12.833 13.179 7.614 19.908 hybrid contribution 0.660 -0.889 -1.281 1.693 sum -12.173 12.290 6.333 18.421 Atomic orbital electron populations 1.21738 0.94355 1.01873 1.01966 1.21101 0.96605 0.99924 0.92598 0.90369 1.22037 0.95522 1.01622 0.97627 1.21488 0.92964 0.98872 0.86207 1.47098 1.45758 1.37144 1.06726 1.15747 0.79590 0.79392 0.84264 1.90896 1.58964 1.66438 1.30902 1.44974 1.52726 1.32895 1.07881 1.20808 0.94723 0.87852 0.96784 1.19748 0.84967 0.84366 0.89497 1.90478 1.55320 1.57712 1.45174 1.41794 1.41399 1.25694 1.09396 1.19775 1.27637 1.11793 0.84235 0.87621 1.25330 0.96290 0.96222 0.99874 1.69620 1.31897 1.20592 1.31287 0.85758 0.78204 0.78530 0.81596 1.19129 1.20599 1.20600 1.22400 0.95033 1.00208 0.86915 1.22163 0.91746 0.96148 0.86253 0.92062 1.86491 1.75187 1.58949 1.16072 0.92890 0.92768 0.91749 0.91149 0.89933 0.88473 0.91695 0.75488 0.89888 0.90047 0.76993 0.91606 0.90528 0.89618 0.76986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.03 37.16 0.34 -0.82 16 2 C -0.08 -0.73 2.43 -90.58 -0.22 -0.95 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.13 -1.10 5.36 -26.61 -0.14 -1.24 16 5 C 0.13 1.35 6.42 -3.71 -0.02 1.32 16 6 N -0.63 -8.04 2.97 -178.51 -0.53 -8.57 16 7 C 0.71 11.81 8.30 -86.92 -0.72 11.09 16 8 O -0.59 -11.65 15.79 5.29 0.08 -11.57 16 9 N -0.73 -12.39 5.44 -66.41 -0.36 -12.75 16 10 C 0.13 2.36 6.16 -5.19 -0.03 2.33 16 11 C 0.43 9.75 7.85 -10.98 -0.09 9.67 16 12 O -0.60 -15.09 15.24 5.54 0.08 -15.01 16 13 N -0.55 -13.49 5.29 -10.96 -0.06 -13.55 16 14 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 15 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 17 N -0.89 -23.74 13.05 55.50 0.72 -23.01 16 18 Si 0.93 20.35 29.55 -169.99 -5.02 15.33 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.08 0.84 6.06 -3.71 -0.02 0.81 16 23 C 0.10 0.94 3.07 -26.61 -0.08 0.85 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 O -0.56 -5.24 12.60 -35.23 -0.44 -5.69 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.57 7.65 -51.93 -0.40 0.18 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 1.16 7.03 -51.93 -0.37 0.79 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.40 6.71 4.89 -40.82 -0.20 6.51 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.40 9.40 7.90 -40.82 -0.32 9.08 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.95 5.57 -51.93 -0.29 0.66 16 40 H 0.38 2.39 9.08 45.56 0.41 2.80 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -32.00 330.11 -6.68 -38.69 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -4.90 Total: 15.87 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: -1.24 Total: 15.28 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.23 Total: -57.88 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.28 Total: -32.26 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.00 -6.68 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358282410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.557 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds