Wall clock time and date at job start Tue Mar 31 2020 03:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.45781 * 2 1 4 4 C 1.53038 * 109.46012 * 119.96676 * 2 1 3 5 5 C 1.53197 * 109.31208 * 181.38338 * 4 2 1 6 6 N 1.46921 * 108.77314 * 305.36422 * 5 4 2 7 7 C 1.34776 * 120.62961 * 233.58023 * 6 5 4 8 8 O 1.21591 * 119.99802 * 354.97288 * 7 6 5 9 9 N 1.34770 * 120.00236 * 174.96222 * 7 6 5 10 10 C 1.46502 * 120.00181 * 185.07746 * 9 7 6 11 11 C 1.50704 * 109.47332 * 180.02562 * 10 9 7 12 12 O 1.21298 * 119.99609 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00045 * 179.97438 * 11 10 9 14 14 C 1.37100 * 119.99563 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00268 * 359.97438 * 14 13 11 16 16 C 1.38948 * 119.99360 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00592 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99669 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47134 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47014 * 119.99958 * 18 16 14 21 21 H 1.48495 * 109.47373 * 239.99697 * 18 16 14 22 22 C 1.46926 * 118.74123 * 53.60949 * 6 5 4 23 23 C 1.53044 * 109.45870 * 240.03117 * 2 1 3 24 24 H 1.08997 * 109.52695 * 298.58625 * 23 2 1 25 25 O 1.42909 * 109.49598 * 58.66206 * 23 2 1 26 26 H 1.08998 * 109.47112 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46832 * 299.96823 * 1 2 3 28 28 H 1.09006 * 109.47036 * 59.96940 * 1 2 3 29 29 H 1.08992 * 109.50255 * 61.42810 * 4 2 1 30 30 H 1.09007 * 109.49425 * 301.33139 * 4 2 1 31 31 H 1.08994 * 109.58281 * 185.57288 * 5 4 2 32 32 H 1.09005 * 109.58406 * 65.14987 * 5 4 2 33 33 H 0.97006 * 120.00012 * 5.08359 * 9 7 6 34 34 H 1.08998 * 109.46918 * 300.00364 * 10 9 7 35 35 H 1.08997 * 109.47308 * 60.00145 * 10 9 7 36 36 H 0.96997 * 119.99902 * 0.02562 * 13 11 10 37 37 H 0.97004 * 120.00590 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.58835 * 66.17639 * 22 6 5 39 39 H 1.08999 * 109.58433 * 186.60205 * 22 6 5 40 40 H 0.96696 * 114.00090 * 179.83725 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6886 1.2642 6 7 4.0678 -1.2489 -0.0001 7 6 4.9621 -2.2572 -0.0001 8 8 5.4347 -2.6506 1.0489 9 7 5.3323 -2.8296 -1.1627 10 6 6.2176 -3.9968 -1.1553 11 6 6.4766 -4.4399 -2.5722 12 8 5.9717 -3.8394 -3.4973 13 7 7.2701 -5.5028 -2.8115 14 6 7.5061 -5.9055 -4.1006 15 1 7.0558 -5.3713 -4.9242 16 6 8.3237 -7.0015 -4.3473 17 7 8.8711 -7.6517 -3.3452 18 14 8.6447 -7.5507 -6.1037 19 1 7.9179 -6.6583 -7.0421 20 1 10.1013 -7.4832 -6.3851 21 1 8.1708 -8.9469 -6.2802 22 6 3.5713 -0.6886 -1.2643 23 6 2.0399 -0.7208 -1.2501 24 1 1.6978 -1.7557 -1.2389 25 8 1.5381 -0.0653 -2.4166 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5133 0.8903 28 1 -0.3633 0.5143 -0.8898 29 1 1.6978 -1.7555 1.2384 30 1 1.6573 -0.2206 2.1398 31 1 3.9417 -1.2845 2.0984 32 1 3.9143 0.3410 1.3672 33 1 5.0125 -2.4687 -2.0044 34 1 7.1620 -3.7334 -0.6789 35 1 5.7450 -4.8078 -0.6012 36 1 7.6742 -5.9827 -2.0718 37 1 9.4417 -8.4172 -3.5174 38 1 3.9142 0.3408 -1.3675 39 1 3.9416 -1.2846 -2.0984 40 1 1.8240 -0.4682 -3.2479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358282410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:13 Heat of formation + Delta-G solvation = -143.572118 kcal Electronic energy + Delta-G solvation = -22829.942730 eV Core-core repulsion = 19257.479282 eV Total energy + Delta-G solvation = -3572.463448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69721 -40.26884 -39.34413 -36.73240 -36.26159 -35.49252 -34.60585 -33.37395 -31.15757 -29.68101 -28.50751 -26.40006 -24.47331 -23.98197 -21.75553 -21.38665 -20.72209 -20.11027 -19.37372 -18.24531 -17.58591 -17.31715 -16.97838 -16.56758 -16.06834 -15.97898 -15.83920 -15.41222 -15.22191 -15.15360 -14.55761 -14.18249 -13.98339 -13.68030 -13.55925 -13.53166 -13.29657 -13.05028 -12.91914 -12.54583 -12.44925 -12.11275 -12.00027 -11.81745 -11.58550 -11.46918 -11.17294 -11.15540 -10.57001 -10.33903 -10.10243 -9.56431 -8.51578 -6.01850 1.34883 1.41406 1.46748 1.58016 1.87756 2.01958 2.27147 2.70049 3.10732 3.15752 3.31036 3.65112 3.69344 3.87883 4.07866 4.19059 4.22339 4.31255 4.39337 4.43228 4.49629 4.64834 4.71431 4.80455 4.83789 4.92655 5.05653 5.10362 5.26592 5.38091 5.38368 5.41465 5.46641 5.81121 5.91555 6.46865 6.76351 6.83246 7.02795 7.38194 7.45925 7.92993 8.65554 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028827 B = 0.003272 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.090769 B = 8555.961469 C = 9288.769547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 H 0.084 0.916 4 C -0.120 4.120 5 C 0.122 3.878 6 N -0.621 5.621 7 C 0.706 3.294 8 O -0.626 6.626 9 N -0.726 5.726 10 C 0.140 3.860 11 C 0.434 3.566 12 O -0.624 6.624 13 N -0.558 5.558 14 C -0.336 4.336 15 H 0.087 0.913 16 C -0.011 4.011 17 N -0.916 5.916 18 Si 0.997 3.003 19 H -0.269 1.269 20 H -0.272 1.272 21 H -0.271 1.271 22 C 0.079 3.921 23 C 0.102 3.898 24 H 0.051 0.949 25 O -0.568 6.568 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.408 0.592 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.399 0.601 37 H 0.280 0.720 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.436 13.731 7.105 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.101 4.101 3 H 0.102 0.898 4 C -0.158 4.158 5 C 0.000 4.000 6 N -0.359 5.359 7 C 0.407 3.593 8 O -0.508 6.508 9 N -0.386 5.386 10 C 0.011 3.989 11 C 0.221 3.779 12 O -0.512 6.512 13 N -0.194 5.194 14 C -0.465 4.465 15 H 0.105 0.895 16 C -0.211 4.211 17 N -0.556 5.556 18 Si 0.820 3.180 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.197 1.197 22 C -0.044 4.044 23 C 0.042 3.958 24 H 0.069 0.931 25 O -0.375 6.375 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.248 0.752 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -13.585 14.033 7.677 20.986 hybrid contribution 0.837 -1.070 -1.280 1.866 sum -12.748 12.963 6.397 19.274 Atomic orbital electron populations 1.21695 0.93751 1.01746 1.02330 1.21122 0.97057 0.99988 0.91962 0.89794 1.21982 0.93742 1.01377 0.98699 1.21711 0.94386 0.99319 0.84562 1.47195 1.44451 1.35848 1.08450 1.15865 0.80018 0.79998 0.83402 1.90871 1.60370 1.67722 1.31797 1.44911 1.52722 1.32616 1.08369 1.20612 0.95678 0.88857 0.93741 1.20367 0.83424 0.83211 0.90895 1.90456 1.55874 1.58229 1.46651 1.41836 1.42181 1.26450 1.08893 1.19778 1.29093 1.12894 0.84776 0.89479 1.26133 0.95487 0.95707 1.03799 1.69684 1.32060 1.20888 1.32988 0.84809 0.78250 0.78153 0.76756 1.19330 1.19705 1.19652 1.22520 0.95838 1.00466 0.85623 1.22083 0.90794 0.95886 0.87056 0.93116 1.86475 1.75196 1.59172 1.16669 0.93265 0.91193 0.92598 0.92190 0.87359 0.90007 0.89774 0.75166 0.89091 0.88979 0.76694 0.91059 0.89260 0.90297 0.75568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.03 71.98 0.65 -1.30 16 2 C -0.08 -1.26 2.43 -10.77 -0.03 -1.28 16 3 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.12 -1.77 5.36 30.67 0.16 -1.61 16 5 C 0.12 2.38 6.42 86.37 0.55 2.93 16 6 N -0.62 -15.25 2.97 -836.93 -2.49 -17.73 16 7 C 0.71 23.16 8.30 179.06 1.49 24.65 16 8 O -0.63 -24.44 15.79 -4.00 -0.06 -24.51 16 9 N -0.73 -24.58 5.44 -482.30 -2.62 -27.20 16 10 C 0.14 5.18 6.16 85.63 0.53 5.71 16 11 C 0.43 19.91 7.85 87.66 0.69 20.60 16 12 O -0.62 -31.70 15.24 -3.09 -0.05 -31.75 16 13 N -0.56 -27.86 5.29 -306.97 -1.62 -29.48 16 14 C -0.34 -18.35 9.68 84.04 0.81 -17.54 16 15 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 16 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 17 N -0.92 -48.43 13.05 21.66 0.28 -48.15 16 18 Si 1.00 41.38 29.55 68.60 2.03 43.40 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 22 C 0.08 1.58 6.06 86.36 0.52 2.10 16 23 C 0.10 1.82 3.07 30.67 0.09 1.92 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 O -0.57 -9.73 12.60 -148.98 -1.88 -11.61 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.89 7.65 -2.38 -0.02 0.88 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.08 1.89 7.03 -2.39 -0.02 1.87 16 32 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.41 13.41 4.89 -92.70 -0.45 12.96 16 34 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.40 19.19 7.90 -92.71 -0.73 18.45 16 37 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 1.69 5.57 -2.39 -0.01 1.67 16 40 H 0.39 4.43 9.08 -74.06 -0.67 3.76 16 Total: -1.00 -67.68 330.11 -1.24 -68.92 By element: Atomic # 1 Polarization: 42.77 SS G_CDS: -0.77 Total: 42.00 kcal Atomic # 6 Polarization: 30.16 SS G_CDS: 5.94 Total: 36.10 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -6.45 Total: -122.57 kcal Atomic # 8 Polarization: -65.88 SS G_CDS: -1.99 Total: -67.86 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -67.68 -1.24 -68.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358282410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.651 kcal (2) G-P(sol) polarization free energy of solvation -67.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds