Wall clock time and date at job start Tue Mar 31 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.43803 * 2 1 4 4 C 1.47692 * 109.43447 * 119.86917 * 2 1 3 5 5 O 1.42484 * 113.66604 * 180.88118 * 4 2 1 6 6 C 1.40525 * 113.54749 * 272.22335 * 5 4 2 7 7 C 1.54286 * 109.86503 * 95.29575 * 6 5 4 8 8 N 1.48174 * 110.70175 * 320.61826 * 7 6 5 9 9 C 1.34774 * 118.51431 * 138.76798 * 8 7 6 10 10 O 1.21591 * 120.00162 * 355.22257 * 9 8 7 11 11 N 1.34780 * 120.00165 * 175.22161 * 9 8 7 12 12 C 1.46500 * 120.00189 * 185.14934 * 11 9 8 13 13 C 1.50699 * 109.47467 * 179.97438 * 12 11 9 14 14 O 1.21293 * 119.99603 * 359.97438 * 13 12 11 15 15 N 1.34769 * 120.00164 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99832 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99917 * 359.97438 * 16 15 13 18 18 C 1.38954 * 119.99693 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99812 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99586 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47134 * 60.00130 * 20 18 16 22 22 H 1.48508 * 109.46791 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47060 * 299.99589 * 20 18 16 24 24 C 1.44463 * 122.97474 * 318.79243 * 8 7 6 25 25 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47482 * 299.91852 * 1 2 3 27 27 H 1.09000 * 109.47430 * 59.91952 * 1 2 3 28 28 H 1.09004 * 108.64877 * 301.95304 * 4 2 1 29 29 H 1.08998 * 108.64390 * 59.78839 * 4 2 1 30 30 H 1.09002 * 109.39717 * 335.17496 * 6 5 4 31 31 H 1.08996 * 109.40600 * 215.42413 * 6 5 4 32 32 H 1.09003 * 109.22713 * 200.30139 * 7 6 5 33 33 H 1.09004 * 109.23185 * 80.93568 * 7 6 5 34 34 H 0.97004 * 120.00064 * 5.14132 * 11 9 8 35 35 H 1.09007 * 109.46737 * 299.99964 * 12 11 9 36 36 H 1.09000 * 109.47089 * 59.99649 * 12 11 9 37 37 H 0.96998 * 120.00012 * 359.97438 * 15 13 12 38 38 H 0.97007 * 119.99417 * 179.97438 * 19 18 16 39 39 H 1.08999 * 109.49823 * 328.95218 * 24 8 7 40 40 H 1.09003 * 109.52023 * 208.87650 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8927 1.0278 0.0000 4 6 2.0214 -0.6936 1.2078 5 8 3.4422 -0.7286 1.3090 6 6 4.0244 -1.8302 0.6591 7 6 4.4687 -1.4257 -0.7620 8 7 3.4706 -0.5263 -1.3868 9 6 3.9125 0.5286 -2.0999 10 8 5.1022 0.7751 -2.1471 11 7 3.0356 1.3103 -2.7606 12 6 3.5221 2.3876 -3.6260 13 6 2.3492 3.1049 -4.2430 14 8 1.2180 2.7507 -3.9855 15 7 2.5570 4.1399 -5.0808 16 6 1.4898 4.7928 -5.6417 17 1 0.4827 4.4774 -5.4124 18 6 1.7041 5.8596 -6.5059 19 7 2.9297 6.2429 -6.7851 20 14 0.2501 6.7495 -7.2695 21 1 -0.5990 7.3234 -6.1948 22 1 0.7433 7.8411 -8.1474 23 1 -0.5499 5.7913 -8.0739 24 6 2.0453 -0.7285 -1.2658 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5125 0.8907 27 1 -0.3634 0.5151 -0.8892 28 1 1.6219 -0.1880 2.0869 29 1 1.6472 -1.7173 1.1982 30 1 3.2962 -2.6387 0.5945 31 1 4.8908 -2.1692 1.2268 32 1 4.5767 -2.3219 -1.3730 33 1 5.4288 -0.9127 -0.7056 34 1 2.0823 1.1595 -2.6633 35 1 4.1089 3.0911 -3.0353 36 1 4.1458 1.9666 -4.4146 37 1 3.4616 4.4234 -5.2864 38 1 3.0792 6.9874 -7.3888 39 1 1.8349 -1.7948 -1.1829 40 1 1.5444 -0.3262 -2.1463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358285467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:15 Heat of formation + Delta-G solvation = -127.136296 kcal Electronic energy + Delta-G solvation = -23226.027733 eV Core-core repulsion = 19654.276996 eV Total energy + Delta-G solvation = -3571.750737 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.80686 -40.34917 -39.60852 -36.72664 -36.27454 -35.45855 -35.03835 -33.37951 -30.82740 -28.95184 -27.45305 -27.07080 -26.25486 -23.45653 -21.92450 -21.42944 -20.83003 -20.13241 -19.32533 -18.28133 -17.52513 -17.24232 -17.00357 -16.73374 -16.46064 -16.10771 -15.85227 -15.62315 -15.29217 -14.97738 -14.56390 -14.48780 -13.93465 -13.77125 -13.61763 -13.53616 -13.04434 -12.93307 -12.87900 -12.63478 -12.47283 -12.39620 -12.13495 -11.74430 -11.56981 -11.56522 -11.29405 -10.61080 -10.56778 -10.31957 -10.10238 -9.52447 -8.51068 -6.01635 1.37967 1.41930 1.50201 1.56320 1.88116 2.04328 2.27769 2.75995 3.01424 3.15035 3.16016 3.66074 3.76909 3.95331 4.12926 4.20103 4.20788 4.35343 4.37733 4.41447 4.42563 4.56320 4.65021 4.69838 4.79044 4.85712 4.91671 5.04983 5.22004 5.28891 5.34086 5.38075 5.58945 5.78520 5.91432 6.39404 6.47095 6.86724 7.02479 7.39715 7.47383 7.92902 8.65704 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.029132 B = 0.003554 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.917356 B = 7876.441581 C = 8590.225359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 H 0.046 0.954 4 C 0.065 3.935 5 O -0.393 6.393 6 C 0.051 3.949 7 C 0.094 3.906 8 N -0.615 5.615 9 C 0.699 3.301 10 O -0.632 6.632 11 N -0.726 5.726 12 C 0.139 3.861 13 C 0.434 3.566 14 O -0.622 6.622 15 N -0.558 5.558 16 C -0.338 4.338 17 H 0.088 0.912 18 C -0.010 4.010 19 N -0.917 5.917 20 Si 0.998 3.002 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.269 1.269 24 C 0.108 3.892 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.409 0.591 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.398 0.602 38 H 0.280 0.720 39 H 0.113 0.887 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 -17.130 13.558 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 H 0.065 0.935 4 C -0.011 4.011 5 O -0.311 6.311 6 C -0.027 4.027 7 C -0.028 4.028 8 N -0.350 5.350 9 C 0.400 3.600 10 O -0.514 6.514 11 N -0.385 5.385 12 C 0.010 3.990 13 C 0.221 3.779 14 O -0.510 6.510 15 N -0.193 5.193 16 C -0.468 4.468 17 H 0.106 0.894 18 C -0.211 4.211 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.196 1.196 23 H -0.194 1.194 24 C -0.015 4.015 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.249 0.751 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.090 0.910 39 H 0.131 0.869 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.535 -16.921 13.652 21.796 hybrid contribution -0.434 0.879 -0.862 1.305 sum -1.968 -16.042 12.791 20.611 Atomic orbital electron populations 1.21663 0.91734 1.03604 1.02621 1.21597 0.98035 1.00031 0.96599 0.93540 1.21694 0.80363 1.01649 0.97394 1.87486 1.21108 1.48485 1.74038 1.23080 1.00296 0.88569 0.90709 1.22768 0.91708 0.93268 0.95095 1.46934 1.07435 1.26998 1.53664 1.16067 0.84501 0.80382 0.79075 1.90845 1.16278 1.74740 1.69509 1.44921 1.10371 1.34048 1.49181 1.20595 0.94176 0.89798 0.94388 1.20326 0.90325 0.83600 0.83645 1.90452 1.25323 1.69066 1.66197 1.41821 1.09843 1.27856 1.39780 1.19725 0.88810 1.12933 1.25298 0.89437 1.26152 1.00593 0.97353 0.97000 1.69684 1.21333 1.28531 1.36092 0.84915 0.77227 0.77653 0.78111 1.19450 1.19650 1.19359 1.21815 0.79092 1.02860 0.97782 0.89859 0.91463 0.92984 0.89322 0.90116 0.89687 0.86934 0.89072 0.91066 0.75092 0.89538 0.89048 0.76745 0.91043 0.86922 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.15 71.98 0.66 -1.50 16 2 C -0.14 -2.80 2.88 -11.82 -0.03 -2.83 16 3 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 4 C 0.07 1.06 5.26 70.32 0.37 1.43 16 5 O -0.39 -8.41 10.22 -144.91 -1.48 -9.89 16 6 C 0.05 0.76 6.49 72.42 0.47 1.23 16 7 C 0.09 1.96 6.58 86.49 0.57 2.53 16 8 N -0.61 -16.12 2.55 -834.26 -2.13 -18.25 16 9 C 0.70 24.77 8.21 179.05 1.47 26.24 16 10 O -0.63 -26.60 15.63 -4.00 -0.06 -26.66 16 11 N -0.73 -26.35 5.36 -482.28 -2.58 -28.93 16 12 C 0.14 5.48 6.16 85.63 0.53 6.00 16 13 C 0.43 20.62 7.85 87.66 0.69 21.31 16 14 O -0.62 -32.51 15.24 -3.07 -0.05 -32.55 16 15 N -0.56 -28.54 5.29 -306.99 -1.62 -30.16 16 16 C -0.34 -18.79 9.68 84.04 0.81 -17.97 16 17 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 18 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 19 N -0.92 -49.17 13.05 21.66 0.28 -48.88 16 20 Si 1.00 41.83 29.55 68.60 2.03 43.86 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 C 0.11 2.19 4.59 87.40 0.40 2.59 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.08 0.82 7.28 -2.39 -0.02 0.80 16 30 H 0.09 0.75 7.20 -2.39 -0.02 0.73 16 31 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.89 6.96 -2.39 -0.02 1.88 16 34 H 0.41 14.49 4.98 -92.71 -0.46 14.03 16 35 H 0.09 3.35 8.14 -2.38 -0.02 3.33 16 36 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 37 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 38 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 39 H 0.11 1.49 8.10 -2.39 -0.02 1.47 16 40 H 0.07 1.66 5.99 -2.39 -0.01 1.65 16 Total: -1.00 -71.38 327.73 0.66 -70.72 By element: Atomic # 1 Polarization: 41.93 SS G_CDS: -0.12 Total: 41.80 kcal Atomic # 6 Polarization: 32.56 SS G_CDS: 6.40 Total: 38.96 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -6.05 Total: -126.24 kcal Atomic # 8 Polarization: -67.51 SS G_CDS: -1.59 Total: -69.10 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -71.38 0.66 -70.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358285467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.418 kcal (2) G-P(sol) polarization free energy of solvation -71.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds