Wall clock time and date at job start Tue Mar 31 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86799 * 119.99877 * 2 1 4 4 H 1.48496 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47080 * 299.99899 * 3 2 1 6 6 H 1.48502 * 109.47342 * 59.99982 * 3 2 1 7 7 C 1.38942 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00087 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00072 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 H 1.08995 * 109.47013 * 324.72129 * 17 16 14 19 19 C 1.52999 * 109.47257 * 84.72116 * 17 16 14 20 20 C 1.53003 * 109.47010 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.47127 * 300.00125 * 20 19 17 22 22 C 1.52999 * 109.47278 * 60.00039 * 21 20 19 23 23 C 1.52994 * 109.47024 * 299.99839 * 22 21 20 24 24 H 1.08994 * 109.47599 * 300.00048 * 23 22 21 25 25 O 1.42902 * 109.47261 * 179.97438 * 23 22 21 26 26 H 0.96997 * 119.99818 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99872 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47088 * 59.99268 * 12 10 9 29 29 H 1.09006 * 109.46998 * 299.99468 * 12 10 9 30 30 H 0.97000 * 120.00386 * 0.02562 * 13 12 10 31 31 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 32 32 H 1.08996 * 109.47245 * 299.99926 * 19 17 16 33 33 H 1.08995 * 109.47098 * 60.00065 * 19 17 16 34 34 H 1.08996 * 109.47077 * 179.97438 * 20 19 17 35 35 H 1.09003 * 109.47062 * 60.00488 * 20 19 17 36 36 H 1.08995 * 109.47275 * 299.99879 * 21 20 19 37 37 H 1.09003 * 109.47146 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47245 * 179.97438 * 22 21 20 39 39 H 1.09003 * 109.46809 * 59.99699 * 22 21 20 40 40 H 0.96702 * 113.99950 * 60.00090 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0004 14 6 1.7466 -7.2471 0.0013 15 8 0.5512 -7.4693 0.0022 16 7 2.6225 -8.2715 0.0011 17 6 2.1341 -9.6527 -0.0041 18 1 1.2203 -9.7172 0.5864 19 6 1.8433 -10.0854 -1.4426 20 6 1.3339 -11.5281 -1.4480 21 6 2.3979 -12.4469 -0.8443 22 6 2.6887 -12.0142 0.5942 23 6 3.1981 -10.5716 0.5996 24 1 4.1118 -10.5066 0.0090 25 8 3.4692 -10.1672 1.9432 26 1 -0.4850 0.8400 -0.0004 27 1 0.3534 -2.3906 0.0005 28 1 0.6167 -4.9208 -0.8885 29 1 0.6176 -4.9205 0.8915 30 1 3.1495 -5.7992 0.0000 31 1 3.5761 -8.0942 0.0000 32 1 1.0857 -9.4305 -1.8729 33 1 2.7571 -10.0209 -2.0332 34 1 1.1263 -11.8362 -2.4727 35 1 0.4201 -11.5930 -0.8574 36 1 3.3116 -12.3820 -1.4349 37 1 2.0351 -13.4748 -0.8486 38 1 3.4463 -12.6691 1.0245 39 1 1.7749 -12.0791 1.1849 40 1 4.1360 -10.7070 2.3894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358295081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:20 Heat of formation + Delta-G solvation = -135.966444 kcal Electronic energy + Delta-G solvation = -22382.136099 eV Core-core repulsion = 18810.002458 eV Total energy + Delta-G solvation = -3572.133641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.23892 -38.92729 -38.00624 -35.84593 -34.39620 -34.06814 -33.56459 -31.34278 -30.26740 -29.22286 -27.10089 -24.45388 -23.06810 -22.36733 -20.55793 -20.27083 -19.53066 -18.30787 -17.90849 -17.51321 -16.67882 -15.59520 -15.37076 -15.11387 -14.81173 -14.69458 -14.33554 -14.20499 -13.89691 -13.84902 -13.60426 -13.31340 -12.99005 -12.79299 -12.13115 -11.98475 -11.79690 -11.60531 -11.52514 -11.17148 -11.11717 -11.00866 -10.51199 -10.38662 -10.30529 -10.27595 -9.87584 -9.61515 -9.05318 -8.58204 -8.52167 -8.06443 -6.48326 -3.90177 2.87049 3.12486 3.24353 3.31312 3.48915 3.79043 3.80707 4.11360 4.34039 4.37994 4.62427 4.65043 4.85374 4.88416 4.95231 5.03113 5.12704 5.15643 5.20604 5.38664 5.56685 5.67450 5.73507 5.79382 5.83384 5.96763 6.03531 6.06770 6.11971 6.13392 6.62822 6.83881 7.19681 7.36240 7.49257 7.96246 8.33488 8.49068 8.89568 9.08148 9.43448 9.91476 10.68796 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.044508 B = 0.002696 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.942924 B =10383.830711 C =10669.766252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.024 3.976 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.430 3.570 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.707 3.293 15 O -0.600 6.600 16 N -0.738 5.738 17 C 0.176 3.824 18 H 0.093 0.907 19 C -0.130 4.130 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.149 4.149 23 C 0.098 3.902 24 H 0.059 0.941 25 O -0.558 6.558 26 H 0.273 0.727 27 H 0.396 0.604 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.406 0.594 31 H 0.396 0.604 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 -23.359 -0.983 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.186 5.186 10 C 0.216 3.784 11 O -0.484 6.484 12 C 0.000 4.000 13 N -0.382 5.382 14 C 0.407 3.593 15 O -0.479 6.479 16 N -0.393 5.393 17 C 0.070 3.930 18 H 0.111 0.889 19 C -0.169 4.169 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.187 4.187 23 C 0.038 3.962 24 H 0.077 0.923 25 O -0.363 6.363 26 H 0.083 0.917 27 H 0.230 0.770 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.243 0.757 31 H 0.229 0.771 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.939 -22.883 -1.117 23.247 hybrid contribution 1.076 0.602 0.121 1.239 sum 5.015 -22.281 -0.996 22.860 Atomic orbital electron populations 1.69629 1.05997 1.28363 1.49576 1.25324 0.95668 0.99913 0.96907 0.85760 0.79664 0.80868 0.77797 1.19162 1.20645 1.20629 1.19772 0.93465 0.82012 1.48026 0.87665 1.41796 1.09496 1.04454 1.62810 1.19788 0.88292 0.85037 0.85314 1.90489 1.13781 1.86894 1.57260 1.20770 0.91247 0.84859 1.03079 1.44759 1.11155 1.03337 1.78958 1.15835 0.85220 0.80544 0.77748 1.90890 1.14062 1.84259 1.58663 1.44933 1.08950 1.04620 1.80755 1.20707 0.97266 0.79146 0.95904 0.88874 1.21970 1.02137 0.96677 0.96139 1.21540 0.98683 0.94201 1.01349 1.21525 0.99461 0.99402 0.95269 1.22238 1.02531 0.95824 0.98094 1.22087 0.97243 0.93094 0.83756 0.92319 1.86638 1.63730 1.59612 1.26358 0.91676 0.77016 0.90079 0.90063 0.75665 0.77055 0.90327 0.91675 0.91395 0.91424 0.91750 0.91492 0.91326 0.90691 0.77695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 8 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.55 -13.93 5.29 -10.96 -0.06 -13.99 16 10 C 0.43 10.12 7.85 -10.98 -0.09 10.04 16 11 O -0.60 -15.60 15.24 5.55 0.08 -15.52 16 12 C 0.13 2.50 6.15 -5.19 -0.03 2.47 16 13 N -0.72 -12.87 5.53 -66.41 -0.37 -13.24 16 14 C 0.71 12.20 8.53 -86.92 -0.74 11.46 16 15 O -0.60 -12.20 16.01 5.28 0.08 -12.12 16 16 N -0.74 -9.73 4.95 -58.68 -0.29 -10.02 16 17 C 0.18 2.00 2.14 -67.93 -0.15 1.86 16 18 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 19 C -0.13 -1.29 5.49 -26.73 -0.15 -1.44 16 20 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 21 C -0.12 -0.73 5.92 -26.73 -0.16 -0.88 16 22 C -0.15 -0.97 5.54 -26.73 -0.15 -1.12 16 23 C 0.10 0.82 2.98 -26.73 -0.08 0.74 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 O -0.56 -5.30 13.18 -35.23 -0.46 -5.77 16 26 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.40 9.65 7.90 -40.82 -0.32 9.33 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.41 7.02 7.45 -40.82 -0.30 6.72 16 31 H 0.40 4.43 8.62 -40.82 -0.35 4.08 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.38 1.87 9.08 45.56 0.41 2.28 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -33.41 335.50 -7.31 -40.72 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -5.12 Total: 18.54 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: -1.94 Total: 14.09 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.01 Total: -60.76 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.30 Total: -33.40 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.41 -7.31 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358295081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.241 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds