Wall clock time and date at job start Tue Mar 31 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86799 * 119.99877 * 2 1 4 4 H 1.48496 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47080 * 299.99899 * 3 2 1 6 6 H 1.48502 * 109.47342 * 59.99982 * 3 2 1 7 7 C 1.38942 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00087 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00072 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 H 1.08995 * 109.47013 * 324.72129 * 17 16 14 19 19 C 1.52999 * 109.47257 * 84.72116 * 17 16 14 20 20 C 1.53003 * 109.47010 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.47127 * 300.00125 * 20 19 17 22 22 C 1.52999 * 109.47278 * 60.00039 * 21 20 19 23 23 C 1.52994 * 109.47024 * 299.99839 * 22 21 20 24 24 H 1.08994 * 109.47599 * 300.00048 * 23 22 21 25 25 O 1.42902 * 109.47261 * 179.97438 * 23 22 21 26 26 H 0.96997 * 119.99818 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99872 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47088 * 59.99268 * 12 10 9 29 29 H 1.09006 * 109.46998 * 299.99468 * 12 10 9 30 30 H 0.97000 * 120.00386 * 0.02562 * 13 12 10 31 31 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 32 32 H 1.08996 * 109.47245 * 299.99926 * 19 17 16 33 33 H 1.08995 * 109.47098 * 60.00065 * 19 17 16 34 34 H 1.08996 * 109.47077 * 179.97438 * 20 19 17 35 35 H 1.09003 * 109.47062 * 60.00488 * 20 19 17 36 36 H 1.08995 * 109.47275 * 299.99879 * 21 20 19 37 37 H 1.09003 * 109.47146 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47245 * 179.97438 * 22 21 20 39 39 H 1.09003 * 109.46809 * 59.99699 * 22 21 20 40 40 H 0.96702 * 113.99950 * 60.00090 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0004 14 6 1.7466 -7.2471 0.0013 15 8 0.5512 -7.4693 0.0022 16 7 2.6225 -8.2715 0.0011 17 6 2.1341 -9.6527 -0.0041 18 1 1.2203 -9.7172 0.5864 19 6 1.8433 -10.0854 -1.4426 20 6 1.3339 -11.5281 -1.4480 21 6 2.3979 -12.4469 -0.8443 22 6 2.6887 -12.0142 0.5942 23 6 3.1981 -10.5716 0.5996 24 1 4.1118 -10.5066 0.0090 25 8 3.4692 -10.1672 1.9432 26 1 -0.4850 0.8400 -0.0004 27 1 0.3534 -2.3906 0.0005 28 1 0.6167 -4.9208 -0.8885 29 1 0.6176 -4.9205 0.8915 30 1 3.1495 -5.7992 0.0000 31 1 3.5761 -8.0942 0.0000 32 1 1.0857 -9.4305 -1.8729 33 1 2.7571 -10.0209 -2.0332 34 1 1.1263 -11.8362 -2.4727 35 1 0.4201 -11.5930 -0.8574 36 1 3.3116 -12.3820 -1.4349 37 1 2.0351 -13.4748 -0.8486 38 1 3.4463 -12.6691 1.0245 39 1 1.7749 -12.0791 1.1849 40 1 4.1360 -10.7070 2.3894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358295081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:20 Heat of formation + Delta-G solvation = -164.313729 kcal Electronic energy + Delta-G solvation = -22383.365329 eV Core-core repulsion = 18810.002458 eV Total energy + Delta-G solvation = -3573.362872 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.43107 -40.30133 -39.48446 -36.55951 -36.23054 -35.26108 -35.15669 -33.37169 -31.01243 -30.19782 -28.61741 -26.33469 -23.82635 -23.15322 -21.82058 -21.36907 -21.03835 -20.10828 -19.46785 -18.19640 -17.80551 -17.41135 -16.83415 -16.53669 -16.26184 -15.83076 -15.73712 -15.38766 -15.26777 -14.94963 -14.69106 -14.25631 -13.95046 -13.81983 -13.71975 -13.54947 -13.40301 -12.91370 -12.56401 -12.44701 -12.23475 -12.10944 -11.79159 -11.62515 -11.58111 -11.49021 -11.16675 -10.79797 -10.56110 -10.39530 -10.10371 -9.80668 -8.51139 -6.01475 1.35188 1.42476 1.55169 1.62108 1.89219 2.12618 2.28758 3.02541 3.15869 3.16159 3.31368 3.70653 3.92543 4.03817 4.20189 4.20579 4.23230 4.35061 4.40143 4.44539 4.45222 4.49267 4.80858 4.92390 5.04473 5.14286 5.15077 5.24412 5.30159 5.33149 5.38985 5.46348 5.57664 5.91426 5.96464 6.47878 6.92267 7.03292 7.03689 7.42559 7.54557 7.94024 8.66194 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.044508 B = 0.002696 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.942924 B =10383.830711 C =10669.766252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.435 3.565 11 O -0.623 6.623 12 C 0.142 3.858 13 N -0.724 5.724 14 C 0.704 3.296 15 O -0.633 6.633 16 N -0.723 5.723 17 C 0.169 3.831 18 H 0.060 0.940 19 C -0.125 4.125 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.144 4.144 23 C 0.104 3.896 24 H 0.080 0.920 25 O -0.583 6.583 26 H 0.280 0.720 27 H 0.399 0.601 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.409 0.591 31 H 0.408 0.592 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.058 -24.523 -1.205 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.222 3.778 11 O -0.511 6.511 12 C 0.013 3.987 13 N -0.382 5.382 14 C 0.404 3.596 15 O -0.515 6.515 16 N -0.377 5.377 17 C 0.063 3.937 18 H 0.078 0.922 19 C -0.164 4.164 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.182 4.182 23 C 0.044 3.956 24 H 0.098 0.902 25 O -0.392 6.392 26 H 0.089 0.911 27 H 0.233 0.767 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.247 0.753 31 H 0.244 0.756 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.183 -24.098 -1.333 24.685 hybrid contribution 0.692 0.896 0.209 1.151 sum 5.876 -23.202 -1.124 23.961 Atomic orbital electron populations 1.69695 1.07044 1.29589 1.49394 1.26155 0.96555 1.02742 0.95793 0.84793 0.78114 0.76625 0.78322 1.19393 1.19580 1.19621 1.19777 0.92960 0.83499 1.50281 0.89556 1.41842 1.09599 1.04592 1.63472 1.20384 0.88098 0.85857 0.83485 1.90464 1.15146 1.87548 1.57989 1.20574 0.91034 0.83170 1.03896 1.44680 1.10935 1.03246 1.79336 1.15974 0.85210 0.80831 0.77569 1.90865 1.15706 1.84695 1.60259 1.44908 1.09081 1.04553 1.79190 1.20927 0.97294 0.78662 0.96770 0.92178 1.21899 1.01935 0.97564 0.94983 1.21543 0.98886 0.93075 1.02103 1.21517 0.99328 0.99514 0.94806 1.22215 1.02609 0.94875 0.98486 1.22064 0.96903 0.93059 0.83544 0.90192 1.86583 1.64836 1.60788 1.26984 0.91059 0.76705 0.89060 0.89346 0.75298 0.75649 0.93405 0.90120 0.90278 0.92599 0.90367 0.90041 0.88788 0.92103 0.75382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.41 13.05 21.66 0.28 -49.13 16 2 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 3 Si 1.00 42.20 29.55 68.60 2.03 44.23 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.34 -18.78 9.68 84.04 0.81 -17.97 16 8 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 9 N -0.56 -28.76 5.29 -306.99 -1.62 -30.38 16 10 C 0.43 20.69 7.85 87.66 0.69 21.38 16 11 O -0.62 -32.92 15.24 -3.07 -0.05 -32.97 16 12 C 0.14 5.53 6.15 85.63 0.53 6.05 16 13 N -0.72 -25.70 5.53 -482.28 -2.67 -28.36 16 14 C 0.70 24.45 8.53 179.05 1.53 25.97 16 15 O -0.63 -26.32 16.01 -4.01 -0.06 -26.38 16 16 N -0.72 -18.76 4.95 -457.81 -2.26 -21.02 16 17 C 0.17 3.78 2.14 44.99 0.10 3.88 16 18 H 0.06 1.76 7.58 -2.39 -0.02 1.74 16 19 C -0.12 -2.41 5.49 30.60 0.17 -2.24 16 20 C -0.12 -1.67 5.92 30.59 0.18 -1.49 16 21 C -0.11 -1.07 5.92 30.59 0.18 -0.89 16 22 C -0.14 -1.53 5.54 30.59 0.17 -1.36 16 23 C 0.10 1.53 2.98 30.59 0.09 1.62 16 24 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 25 O -0.58 -10.11 13.18 -148.98 -1.96 -12.08 16 26 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 27 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 28 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 29 H 0.09 3.35 8.14 -2.38 -0.02 3.33 16 30 H 0.41 14.07 7.45 -92.71 -0.69 13.38 16 31 H 0.41 8.64 8.62 -92.71 -0.80 7.84 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.40 3.02 9.08 -74.06 -0.67 2.35 16 Total: -1.00 -72.33 335.50 -3.21 -75.53 By element: Atomic # 1 Polarization: 47.55 SS G_CDS: -1.80 Total: 45.76 kcal Atomic # 6 Polarization: 29.90 SS G_CDS: 4.91 Total: 34.81 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -6.27 Total: -128.90 kcal Atomic # 8 Polarization: -69.35 SS G_CDS: -2.07 Total: -71.43 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -72.33 -3.21 -75.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358295081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.782 kcal (2) G-P(sol) polarization free energy of solvation -72.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds