Wall clock time and date at job start Tue Mar 31 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.78064 * 2 1 4 4 C 1.55156 * 110.72207 * 236.75612 * 2 1 3 5 5 C 1.54908 * 101.58197 * 206.13348 * 4 2 1 6 6 N 1.47422 * 104.83357 * 37.01425 * 5 4 2 7 7 C 1.34775 * 125.65218 * 155.88832 * 6 5 4 8 8 O 1.21586 * 120.00035 * 179.97438 * 7 6 5 9 9 N 1.34773 * 119.99777 * 359.97438 * 7 6 5 10 10 C 1.46500 * 120.00312 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99813 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00198 * 179.97438 * 11 10 9 14 14 C 1.37098 * 120.00433 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99670 * 0.02562 * 14 13 11 16 16 C 1.38946 * 120.00486 * 180.02562 * 14 13 11 17 17 N 1.31421 * 119.99792 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00136 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47246 * 89.99864 * 18 16 14 20 20 H 1.48506 * 109.46593 * 209.99846 * 18 16 14 21 21 H 1.48498 * 109.46999 * 329.99365 * 18 16 14 22 22 C 1.47031 * 108.70136 * 335.86884 * 6 5 4 23 23 H 1.08998 * 109.88059 * 241.64343 * 22 6 5 24 24 C 1.52997 * 109.87989 * 120.47502 * 22 6 5 25 25 O 1.42901 * 109.46861 * 67.19784 * 24 22 6 26 26 H 1.09001 * 109.47346 * 296.75857 * 1 2 3 27 27 H 1.08991 * 109.47208 * 56.76714 * 1 2 3 28 28 H 1.09001 * 109.46521 * 176.76297 * 1 2 3 29 29 H 1.08999 * 111.00338 * 324.21288 * 4 2 1 30 30 H 1.09003 * 110.99778 * 88.06071 * 4 2 1 31 31 H 1.09000 * 110.36459 * 155.84880 * 5 4 2 32 32 H 1.09001 * 110.36573 * 278.06223 * 5 4 2 33 33 H 0.97008 * 119.99991 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46459 * 299.99524 * 10 9 7 35 35 H 1.08997 * 109.47164 * 59.99066 * 10 9 7 36 36 H 0.97000 * 120.00082 * 0.02562 * 13 11 10 37 37 H 0.96996 * 119.99488 * 180.02562 * 17 16 14 38 38 H 1.09007 * 109.46730 * 187.18688 * 24 22 6 39 39 H 1.08996 * 109.47570 * 307.19080 * 24 22 6 40 40 H 0.96706 * 113.99952 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0790 -0.7955 -1.2137 5 6 3.4633 -1.2498 -0.6874 6 7 3.2446 -1.5507 0.7391 7 6 3.9921 -2.3838 1.4899 8 8 3.7184 -2.5568 2.6618 9 7 5.0431 -3.0249 0.9415 10 6 5.8555 -3.9309 1.7573 11 6 6.9582 -4.5153 0.9126 12 8 7.0556 -4.2058 -0.2561 13 7 7.8360 -5.3817 1.4557 14 6 8.8395 -5.9130 0.6873 15 1 8.9268 -5.6368 -0.3531 16 6 9.7443 -6.8067 1.2471 17 7 9.6384 -7.1424 2.5133 18 14 11.1120 -7.5299 0.2003 19 1 12.3092 -6.6548 0.2767 20 1 11.4560 -8.8844 0.7026 21 1 10.6578 -7.6256 -1.2102 22 6 2.0760 -0.7911 1.2074 23 1 2.3741 -0.1023 1.9978 24 6 1.0050 -1.7522 1.7271 25 8 1.4766 -2.3946 2.9132 26 1 -0.3634 0.4627 0.9176 27 1 -0.3633 0.5632 -0.8595 28 1 -0.3632 -1.0261 -0.0580 29 1 1.4452 -1.6536 -1.4374 30 1 2.1850 -0.1519 -2.0870 31 1 3.7961 -2.1426 -1.2167 32 1 4.1936 -0.4485 -0.8001 33 1 5.2613 -2.8871 0.0064 34 1 6.2896 -3.3785 2.5907 35 1 5.2279 -4.7348 2.1419 36 1 7.7579 -5.6295 2.3902 37 1 10.2702 -7.7660 2.9041 38 1 0.0956 -1.1950 1.9528 39 1 0.7914 -2.5037 0.9671 40 1 0.8473 -3.0194 3.2989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358305800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:22 Heat of formation + Delta-G solvation = -107.513520 kcal Electronic energy + Delta-G solvation = -22987.144979 eV Core-core repulsion = 19416.245149 eV Total energy + Delta-G solvation = -3570.899830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39460 -38.60585 -37.61102 -36.06919 -34.28677 -33.55551 -32.94668 -31.31500 -30.38902 -28.13074 -26.54676 -24.76336 -24.32046 -22.77366 -20.21512 -19.50824 -19.07860 -18.30390 -17.87159 -17.19350 -16.23963 -15.84463 -15.43437 -14.93729 -14.77408 -14.53265 -14.19524 -14.06368 -13.76942 -13.54983 -13.37646 -13.04193 -12.77652 -12.64689 -12.15072 -12.06330 -11.82374 -11.60421 -11.56147 -11.24615 -11.09122 -11.00402 -10.69762 -10.43083 -10.27819 -9.80752 -9.59255 -9.56351 -8.64265 -8.55947 -8.30688 -8.05000 -6.47117 -3.88976 2.79855 3.14569 3.24302 3.29861 3.63366 3.81892 4.01315 4.12426 4.28545 4.34216 4.50758 4.62844 4.97724 5.03609 5.06244 5.15006 5.21780 5.21980 5.27937 5.36411 5.42834 5.53160 5.57724 5.69754 5.79377 5.89838 6.01199 6.01748 6.11572 6.15720 6.40738 6.95350 7.34773 7.49968 7.84798 7.97477 8.39616 8.50781 9.07097 9.09723 9.45062 9.93240 10.69972 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036457 B = 0.003210 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.842322 B = 8721.369691 C = 9328.320346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.090 0.910 4 C -0.127 4.127 5 C 0.095 3.905 6 N -0.635 5.635 7 C 0.714 3.286 8 O -0.553 6.553 9 N -0.728 5.728 10 C 0.131 3.869 11 C 0.431 3.569 12 O -0.599 6.599 13 N -0.551 5.551 14 C -0.304 4.304 15 H 0.105 0.895 16 C 0.025 3.975 17 N -0.895 5.895 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.269 1.269 22 C 0.163 3.837 23 H 0.077 0.923 24 C 0.063 3.937 25 O -0.530 6.530 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.403 0.597 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.050 0.950 39 H 0.040 0.960 40 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.062 12.414 -4.117 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.165 4.165 5 C -0.028 4.028 6 N -0.375 5.375 7 C 0.415 3.585 8 O -0.428 6.428 9 N -0.387 5.387 10 C 0.003 3.997 11 C 0.216 3.784 12 O -0.485 6.485 13 N -0.186 5.186 14 C -0.433 4.433 15 H 0.123 0.877 16 C -0.178 4.178 17 N -0.536 5.536 18 Si 0.760 3.240 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.194 1.194 22 C 0.058 3.942 23 H 0.095 0.905 24 C -0.016 4.016 25 O -0.332 6.332 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.240 0.760 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -17.446 12.627 -3.937 21.893 hybrid contribution 0.330 -0.852 -0.301 0.962 sum -17.116 11.775 -4.237 21.203 Atomic orbital electron populations 1.21874 0.93860 1.02381 1.02186 1.22214 0.96348 0.99320 0.93841 0.89209 1.22864 0.95962 1.00244 0.97442 1.22283 0.97436 1.00987 0.82088 1.47533 1.31458 1.48050 1.10435 1.15408 0.79620 0.78820 0.84619 1.90994 1.71010 1.66914 1.13894 1.44822 1.30481 1.48201 1.15235 1.20726 0.92328 0.93339 0.93326 1.19807 0.85495 0.84522 0.88550 1.90478 1.76032 1.64673 1.17341 1.41788 1.25481 1.38136 1.13162 1.19721 1.05065 1.22528 0.96025 0.87744 1.25319 0.99107 0.97147 0.96208 1.69624 1.37810 1.34382 1.11768 0.85817 0.80412 0.78059 0.79755 1.20305 1.20829 1.19353 1.21313 0.84956 0.92029 0.95892 0.90538 1.22671 0.95558 0.95097 0.88316 1.87065 1.44551 1.60639 1.40954 0.92038 0.92027 0.92031 0.90486 0.89731 0.90577 0.91469 0.75968 0.90205 0.90220 0.77016 0.91642 0.93235 0.94192 0.79387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 7.93 37.16 0.29 -0.55 16 2 C -0.10 -0.75 3.47 -88.78 -0.31 -1.06 16 3 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.13 -0.98 6.53 -24.58 -0.16 -1.14 16 5 C 0.10 1.04 6.57 -2.53 -0.02 1.02 16 6 N -0.63 -8.99 3.08 -168.69 -0.52 -9.51 16 7 C 0.71 13.05 8.24 -86.92 -0.72 12.33 16 8 O -0.55 -11.73 13.46 -19.07 -0.26 -11.99 16 9 N -0.73 -13.55 5.49 -66.42 -0.36 -13.91 16 10 C 0.13 2.62 6.15 -5.20 -0.03 2.59 16 11 C 0.43 10.27 7.85 -10.99 -0.09 10.18 16 12 O -0.60 -15.77 15.24 5.55 0.08 -15.68 16 13 N -0.55 -14.05 5.29 -10.97 -0.06 -14.11 16 14 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 15 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 16 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 17 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 18 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 C 0.16 1.90 3.27 -66.95 -0.22 1.68 16 23 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 24 C 0.06 0.70 5.36 37.16 0.20 0.90 16 25 O -0.53 -7.71 10.22 -59.59 -0.61 -8.32 16 26 H 0.06 0.34 7.56 -51.93 -0.39 -0.06 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.37 6.72 -51.93 -0.35 0.02 16 29 H 0.08 0.59 8.02 -51.93 -0.42 0.18 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.86 7.30 -51.93 -0.38 0.49 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.40 7.36 5.92 -40.82 -0.24 7.12 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.40 9.75 7.90 -40.82 -0.32 9.43 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 38 H 0.05 0.42 6.31 -51.93 -0.33 0.09 16 39 H 0.04 0.45 7.83 -51.93 -0.41 0.04 16 40 H 0.36 3.73 9.12 45.56 0.42 4.15 16 LS Contribution 326.38 15.07 4.92 4.92 Total: -1.00 -34.29 326.38 -7.28 -41.56 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -4.89 Total: 16.90 kcal Atomic # 6 Polarization: 19.24 SS G_CDS: -1.29 Total: 17.96 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.22 Total: -61.15 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.78 Total: -35.99 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.29 -7.28 -41.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358305800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.949 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds