Wall clock time and date at job start Tue Mar 31 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.78064 * 2 1 4 4 C 1.55156 * 110.72207 * 236.75612 * 2 1 3 5 5 C 1.54908 * 101.58197 * 206.13348 * 4 2 1 6 6 N 1.47422 * 104.83357 * 37.01425 * 5 4 2 7 7 C 1.34775 * 125.65218 * 155.88832 * 6 5 4 8 8 O 1.21586 * 120.00035 * 179.97438 * 7 6 5 9 9 N 1.34773 * 119.99777 * 359.97438 * 7 6 5 10 10 C 1.46500 * 120.00312 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99813 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00198 * 179.97438 * 11 10 9 14 14 C 1.37098 * 120.00433 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99670 * 0.02562 * 14 13 11 16 16 C 1.38946 * 120.00486 * 180.02562 * 14 13 11 17 17 N 1.31421 * 119.99792 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00136 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47246 * 89.99864 * 18 16 14 20 20 H 1.48506 * 109.46593 * 209.99846 * 18 16 14 21 21 H 1.48498 * 109.46999 * 329.99365 * 18 16 14 22 22 C 1.47031 * 108.70136 * 335.86884 * 6 5 4 23 23 H 1.08998 * 109.88059 * 241.64343 * 22 6 5 24 24 C 1.52997 * 109.87989 * 120.47502 * 22 6 5 25 25 O 1.42901 * 109.46861 * 67.19784 * 24 22 6 26 26 H 1.09001 * 109.47346 * 296.75857 * 1 2 3 27 27 H 1.08991 * 109.47208 * 56.76714 * 1 2 3 28 28 H 1.09001 * 109.46521 * 176.76297 * 1 2 3 29 29 H 1.08999 * 111.00338 * 324.21288 * 4 2 1 30 30 H 1.09003 * 110.99778 * 88.06071 * 4 2 1 31 31 H 1.09000 * 110.36459 * 155.84880 * 5 4 2 32 32 H 1.09001 * 110.36573 * 278.06223 * 5 4 2 33 33 H 0.97008 * 119.99991 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46459 * 299.99524 * 10 9 7 35 35 H 1.08997 * 109.47164 * 59.99066 * 10 9 7 36 36 H 0.97000 * 120.00082 * 0.02562 * 13 11 10 37 37 H 0.96996 * 119.99488 * 180.02562 * 17 16 14 38 38 H 1.09007 * 109.46730 * 187.18688 * 24 22 6 39 39 H 1.08996 * 109.47570 * 307.19080 * 24 22 6 40 40 H 0.96706 * 113.99952 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0790 -0.7955 -1.2137 5 6 3.4633 -1.2498 -0.6874 6 7 3.2446 -1.5507 0.7391 7 6 3.9921 -2.3838 1.4899 8 8 3.7184 -2.5568 2.6618 9 7 5.0431 -3.0249 0.9415 10 6 5.8555 -3.9309 1.7573 11 6 6.9582 -4.5153 0.9126 12 8 7.0556 -4.2058 -0.2561 13 7 7.8360 -5.3817 1.4557 14 6 8.8395 -5.9130 0.6873 15 1 8.9268 -5.6368 -0.3531 16 6 9.7443 -6.8067 1.2471 17 7 9.6384 -7.1424 2.5133 18 14 11.1120 -7.5299 0.2003 19 1 12.3092 -6.6548 0.2767 20 1 11.4560 -8.8844 0.7026 21 1 10.6578 -7.6256 -1.2102 22 6 2.0760 -0.7911 1.2074 23 1 2.3741 -0.1023 1.9978 24 6 1.0050 -1.7522 1.7271 25 8 1.4766 -2.3946 2.9132 26 1 -0.3634 0.4627 0.9176 27 1 -0.3633 0.5632 -0.8595 28 1 -0.3632 -1.0261 -0.0580 29 1 1.4452 -1.6536 -1.4374 30 1 2.1850 -0.1519 -2.0870 31 1 3.7961 -2.1426 -1.2167 32 1 4.1936 -0.4485 -0.8001 33 1 5.2613 -2.8871 0.0064 34 1 6.2896 -3.3785 2.5907 35 1 5.2279 -4.7348 2.1419 36 1 7.7579 -5.6295 2.3902 37 1 10.2702 -7.7660 2.9041 38 1 0.0956 -1.1950 1.9528 39 1 0.7914 -2.5037 0.9671 40 1 0.8473 -3.0194 3.2989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358305800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:22 Heat of formation + Delta-G solvation = -134.143761 kcal Electronic energy + Delta-G solvation = -22988.299753 eV Core-core repulsion = 19416.245149 eV Total energy + Delta-G solvation = -3572.054604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.53769 -40.30568 -39.01713 -37.06399 -36.21076 -35.17017 -33.94709 -33.35014 -31.24453 -29.51867 -27.74574 -26.26592 -25.45412 -23.75555 -21.47966 -21.16095 -20.23423 -19.96456 -19.33038 -18.25631 -17.46652 -17.28397 -16.96842 -16.54450 -16.34710 -16.04440 -15.53518 -15.36877 -15.09958 -14.74784 -14.20958 -14.11407 -14.01671 -13.63843 -13.55703 -13.48808 -13.31701 -12.90425 -12.80606 -12.46333 -12.42688 -12.12348 -11.95686 -11.63028 -11.57554 -11.39713 -11.04598 -10.71908 -10.56045 -10.15866 -10.07622 -9.47443 -8.51179 -6.01746 1.36300 1.41904 1.52655 1.58810 1.89184 2.25635 2.28146 2.92484 3.15801 3.20412 3.31455 3.58422 3.74217 3.95237 4.20359 4.25013 4.32904 4.41823 4.43992 4.45422 4.47423 4.56348 4.65599 4.75106 4.89104 4.93523 5.09455 5.16278 5.27220 5.36128 5.41293 5.42183 5.46681 5.91983 6.07923 6.47599 7.02147 7.02728 7.04298 7.42419 7.67931 7.93568 8.65951 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036457 B = 0.003210 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.842322 B = 8721.369691 C = 9328.320346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.102 0.898 4 C -0.116 4.116 5 C 0.085 3.915 6 N -0.634 5.634 7 C 0.708 3.292 8 O -0.588 6.588 9 N -0.730 5.730 10 C 0.146 3.854 11 C 0.435 3.565 12 O -0.624 6.624 13 N -0.559 5.559 14 C -0.338 4.338 15 H 0.087 0.913 16 C -0.011 4.011 17 N -0.917 5.917 18 Si 0.999 3.001 19 H -0.270 1.270 20 H -0.271 1.271 21 H -0.269 1.269 22 C 0.150 3.850 23 H 0.057 0.943 24 C 0.062 3.938 25 O -0.565 6.565 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.404 0.596 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.399 0.601 37 H 0.280 0.720 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.026 13.204 -5.288 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.121 0.879 4 C -0.154 4.154 5 C -0.037 4.037 6 N -0.373 5.373 7 C 0.409 3.591 8 O -0.465 6.465 9 N -0.389 5.389 10 C 0.017 3.983 11 C 0.222 3.778 12 O -0.512 6.512 13 N -0.194 5.194 14 C -0.467 4.467 15 H 0.105 0.895 16 C -0.212 4.212 17 N -0.557 5.557 18 Si 0.822 3.178 19 H -0.195 1.195 20 H -0.196 1.196 21 H -0.194 1.194 22 C 0.046 3.954 23 H 0.075 0.925 24 C -0.017 4.017 25 O -0.370 6.370 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.242 0.758 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -18.452 13.446 -5.120 23.399 hybrid contribution 0.577 -1.046 0.073 1.197 sum -17.875 12.399 -5.048 22.333 Atomic orbital electron populations 1.21871 0.92030 1.02770 1.03344 1.22231 0.97660 0.99098 0.91511 0.87950 1.22875 0.93547 1.00766 0.98183 1.22550 0.99968 1.00973 0.80199 1.47628 1.31282 1.46745 1.11615 1.15579 0.79654 0.79252 0.84571 1.90965 1.71905 1.68241 1.15437 1.44772 1.30732 1.48295 1.15083 1.20509 0.91272 0.93781 0.92746 1.20376 0.85526 0.83477 0.88455 1.90452 1.76758 1.65301 1.18698 1.41832 1.25705 1.38690 1.13186 1.19752 1.06824 1.24318 0.95783 0.89539 1.26164 1.00836 0.96778 0.97417 1.69693 1.38593 1.34528 1.12882 0.84843 0.77353 0.77662 0.77967 1.19523 1.19586 1.19356 1.21676 0.84380 0.91965 0.97351 0.92523 1.22819 0.96386 0.95125 0.87333 1.87016 1.46300 1.61447 1.42274 0.91545 0.90160 0.92119 0.90254 0.86937 0.91419 0.90744 0.75807 0.89532 0.89479 0.76734 0.91042 0.90196 0.94158 0.77834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 7.93 71.98 0.57 -0.61 16 2 C -0.09 -1.09 3.47 -9.60 -0.03 -1.12 16 3 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 4 C -0.12 -1.46 6.53 31.99 0.21 -1.25 16 5 C 0.09 1.75 6.57 86.86 0.57 2.32 16 6 N -0.63 -17.72 3.08 -805.88 -2.48 -20.20 16 7 C 0.71 26.14 8.24 179.06 1.48 27.62 16 8 O -0.59 -25.38 13.46 19.31 0.26 -25.12 16 9 N -0.73 -27.46 5.49 -482.31 -2.65 -30.10 16 10 C 0.15 5.89 6.15 85.63 0.53 6.41 16 11 C 0.43 21.10 7.85 87.66 0.69 21.79 16 12 O -0.62 -33.46 15.24 -3.06 -0.05 -33.51 16 13 N -0.56 -29.08 5.29 -307.00 -1.62 -30.70 16 14 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16 15 H 0.09 5.10 7.16 -2.91 -0.02 5.08 16 16 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 17 N -0.92 -49.66 13.05 21.66 0.28 -49.37 16 18 Si 1.00 42.31 29.55 68.60 2.03 44.33 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 22 C 0.15 3.36 3.27 45.34 0.15 3.51 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 C 0.06 1.32 5.36 71.98 0.39 1.71 16 25 O -0.57 -16.51 10.22 -125.69 -1.28 -17.80 16 26 H 0.07 0.51 7.56 -2.39 -0.02 0.49 16 27 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.54 6.72 -2.39 -0.02 0.52 16 29 H 0.08 1.00 8.02 -2.39 -0.02 0.98 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.50 7.30 -2.39 -0.02 1.48 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.40 14.95 5.92 -92.70 -0.55 14.40 16 34 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.40 20.02 7.90 -92.71 -0.73 19.29 16 37 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 38 H 0.08 1.19 6.31 -2.38 -0.02 1.18 16 39 H 0.04 0.85 7.83 -2.39 -0.02 0.83 16 40 H 0.37 7.80 9.12 -74.05 -0.68 7.12 16 Total: -1.00 -74.37 326.38 -0.56 -74.92 By element: Atomic # 1 Polarization: 46.35 SS G_CDS: -0.87 Total: 45.48 kcal Atomic # 6 Polarization: 36.24 SS G_CDS: 5.82 Total: 42.06 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -6.47 Total: -130.38 kcal Atomic # 8 Polarization: -75.35 SS G_CDS: -1.07 Total: -76.42 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -74.37 -0.56 -74.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358305800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.219 kcal (2) G-P(sol) polarization free energy of solvation -74.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds