Wall clock time and date at job start Tue Mar 31 2020 02:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34221 * 117.00112 * 2 1 4 4 O 1.20824 * 120.00224 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00102 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.50474 * 305.09706 * 5 3 2 7 7 C 1.53711 * 109.44584 * 65.38205 * 5 3 2 8 8 N 1.47144 * 108.16614 * 172.37511 * 7 5 3 9 9 C 1.34774 * 120.98646 * 129.42875 * 8 7 5 10 10 O 1.21273 * 120.00504 * 179.72021 * 9 8 7 11 11 C 1.50702 * 119.99687 * 359.72791 * 9 8 7 12 12 C 1.53001 * 109.47327 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.46995 * 179.97438 * 12 11 9 14 14 H 1.07991 * 120.00449 * 359.72153 * 13 12 11 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48493 * 109.47326 * 90.00142 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47210 * 329.99603 * 17 15 13 21 21 C 1.47160 * 118.03486 * 309.16544 * 8 7 5 22 22 C 1.53294 * 108.38369 * 50.77915 * 21 8 7 23 23 H 1.08998 * 109.50750 * 187.77309 * 22 21 8 24 24 C 1.53004 * 109.51282 * 67.62678 * 22 21 8 25 25 O 1.42955 * 109.51397 * 184.99731 * 5 3 2 26 26 H 1.09001 * 109.47640 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47624 * 300.00363 * 1 2 3 28 28 H 1.08999 * 109.47586 * 60.00063 * 1 2 3 29 29 H 1.09004 * 109.83436 * 52.69334 * 7 5 3 30 30 H 1.09002 * 109.75017 * 292.00958 * 7 5 3 31 31 H 1.08998 * 109.47519 * 59.99364 * 11 9 8 32 32 H 1.09006 * 109.47270 * 299.99595 * 11 9 8 33 33 H 1.08998 * 109.47065 * 59.99424 * 12 11 9 34 34 H 1.09001 * 109.46892 * 299.99688 * 12 11 9 35 35 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.68152 * 170.50434 * 21 8 7 37 37 H 1.09001 * 109.67523 * 291.01995 * 21 8 7 38 38 H 1.08996 * 109.47160 * 59.99381 * 24 22 21 39 39 H 1.08995 * 109.47071 * 179.97438 * 24 22 21 40 40 H 1.08997 * 109.46819 * 299.99702 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9610 0.7037 0.8398 7 6 4.1084 0.6989 -1.3186 8 7 5.5564 0.9556 -1.3703 9 6 6.4275 -0.0356 -1.6443 10 8 7.6169 0.1971 -1.6874 11 6 5.9234 -1.4331 -1.8974 12 6 7.1079 -2.3587 -2.1825 13 6 6.6038 -3.7562 -2.4349 14 1 5.5450 -3.9645 -2.3915 15 6 7.4949 -4.7702 -2.7162 16 7 8.7842 -4.5164 -2.7696 17 14 6.8707 -6.5041 -3.0216 18 1 6.5934 -6.6826 -4.4694 19 1 7.9000 -7.4837 -2.5901 20 1 5.6225 -6.7243 -2.2477 21 6 6.0248 2.3280 -1.1197 22 6 5.3890 2.8256 0.1834 23 1 5.6118 3.8842 0.3161 24 6 5.9535 2.0316 1.3632 25 8 3.9730 2.6402 0.1169 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 3.6192 1.1841 -2.1632 30 1 3.9245 -0.3749 -1.3547 31 1 5.2523 -1.4273 -2.7562 32 1 5.3861 -1.7902 -1.0188 33 1 7.7793 -2.3645 -1.3239 34 1 7.6448 -2.0014 -3.0613 35 1 9.4110 -5.2297 -2.9679 36 1 7.1106 2.3335 -1.0239 37 1 5.7259 2.9743 -1.9449 38 1 7.0336 2.1698 1.4105 39 1 5.5013 2.3863 2.2894 40 1 5.7280 0.9736 1.2302 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360566259.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:20 Heat of formation + Delta-G solvation = -161.454987 kcal Electronic energy + Delta-G solvation = -23378.594508 eV Core-core repulsion = 19773.062850 eV Total energy + Delta-G solvation = -3605.531658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.12703 -40.04572 -38.38765 -36.66149 -34.70811 -33.64185 -32.95265 -30.99396 -29.94134 -27.84453 -27.09603 -25.20753 -24.89503 -22.36365 -21.34498 -20.20708 -18.90431 -18.08241 -17.49373 -16.83529 -16.81113 -16.47317 -15.92181 -15.55731 -15.32334 -14.83556 -14.74861 -14.41172 -13.91557 -13.66477 -13.52335 -13.06754 -12.68417 -12.34941 -12.32079 -12.21959 -12.14407 -12.07195 -11.56801 -11.18743 -11.07804 -11.01598 -10.95626 -10.61412 -10.52060 -10.33473 -10.01657 -9.68126 -9.26089 -9.07088 -8.54790 -8.34474 -5.98819 -4.03363 1.84870 2.03185 2.95772 3.06297 3.31774 3.38174 3.40454 3.68384 4.29041 4.40580 4.44919 4.54289 4.65780 4.83865 4.85193 4.92815 4.95495 5.06825 5.14996 5.27485 5.36443 5.41528 5.49913 5.59692 5.67939 5.73752 5.98279 6.02663 6.10925 6.13116 6.46489 6.69202 6.80631 7.46189 7.53145 7.70886 7.80907 8.03072 8.33763 8.58535 9.04654 9.60474 11.12123 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.004483 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.184178 B = 6244.345593 C = 7644.473178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.351 6.351 3 C 0.472 3.528 4 O -0.485 6.485 5 C 0.083 3.917 6 H 0.108 0.892 7 C 0.092 3.908 8 N -0.626 5.626 9 C 0.517 3.483 10 O -0.525 6.525 11 C -0.131 4.131 12 C 0.037 3.963 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.079 3.921 22 C 0.077 3.923 23 H 0.121 0.879 24 C -0.186 4.186 25 O -0.352 6.352 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.890 12.792 7.056 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.312 3.688 4 O -0.370 6.370 5 C 0.023 3.977 6 H 0.126 0.874 7 C -0.033 4.033 8 N -0.364 5.364 9 C 0.308 3.692 10 O -0.399 6.399 11 C -0.171 4.171 12 C 0.000 4.000 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.044 4.044 22 C 0.020 3.980 23 H 0.139 0.861 24 C -0.244 4.244 25 O -0.271 6.271 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.393 13.264 7.000 20.108 hybrid contribution -0.403 -1.024 -0.165 1.113 sum -13.796 12.241 6.835 19.669 Atomic orbital electron populations 1.23339 0.75493 1.04159 1.02678 1.86502 1.23921 1.32330 1.84057 1.22973 0.90709 0.81867 0.73247 1.90689 1.66565 1.36278 1.43455 1.21835 0.88034 0.87003 1.00819 0.87441 1.22252 0.81801 1.03569 0.95632 1.48320 1.05938 1.09041 1.73060 1.21654 0.85912 0.87187 0.74475 1.90671 1.16014 1.83380 1.49855 1.21937 1.03163 0.89828 1.02127 1.18911 0.91089 0.91873 0.98140 1.21198 0.93216 0.93507 1.48645 0.92547 1.25018 0.94839 0.99022 0.95423 1.69996 1.01348 1.32790 1.48675 0.86594 0.78527 0.84387 0.78461 1.20667 1.21230 1.19849 1.22274 1.01941 0.83381 0.96849 1.22761 0.79443 1.01287 0.94547 0.86131 1.22408 1.02520 1.01346 0.98081 1.88051 1.22831 1.21877 1.94351 0.87546 0.91789 0.91632 0.90156 0.86703 0.90036 0.90026 0.95807 0.95780 0.92927 0.87622 0.90848 0.90613 0.91568 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.35 -3.66 10.56 -39.23 -0.41 -4.08 16 3 C 0.47 5.66 7.29 36.01 0.26 5.92 16 4 O -0.48 -7.09 16.26 -25.45 -0.41 -7.50 16 5 C 0.08 0.95 2.93 -27.51 -0.08 0.87 16 6 H 0.11 1.12 6.25 -51.93 -0.32 0.80 16 7 C 0.09 1.08 5.84 -3.32 -0.02 1.06 16 8 N -0.63 -8.87 2.53 -172.02 -0.44 -9.30 16 9 C 0.52 9.58 7.71 -10.99 -0.08 9.50 16 10 O -0.53 -11.81 15.45 5.56 0.09 -11.72 16 11 C -0.13 -2.55 4.01 -27.88 -0.11 -2.66 16 12 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 13 C -0.53 -14.59 9.11 -34.44 -0.31 -14.90 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 17 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.08 0.96 6.02 -3.53 -0.02 0.93 16 22 C 0.08 0.81 3.93 -26.58 -0.10 0.70 16 23 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 24 C -0.19 -1.90 8.81 37.16 0.33 -1.57 16 25 O -0.35 -4.33 9.76 -55.11 -0.54 -4.87 16 26 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.11 1.27 6.05 -51.93 -0.31 0.95 16 31 H 0.08 1.45 8.00 -51.93 -0.42 1.04 16 32 H 0.08 1.43 7.67 -51.93 -0.40 1.03 16 33 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.11 1.40 7.08 -51.93 -0.37 1.03 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.75 6.11 -51.93 -0.32 0.43 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -35.06 333.15 -6.18 -41.24 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.90 Total: -2.41 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 0.70 Total: 3.62 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.30 Total: -35.57 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -1.28 Total: -28.17 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.06 -6.18 -41.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360566259.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.218 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds