Wall clock time and date at job start Tue Mar 31 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34221 * 117.00112 * 2 1 4 4 O 1.20824 * 120.00224 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00102 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.50474 * 305.09706 * 5 3 2 7 7 C 1.53711 * 109.44584 * 65.38205 * 5 3 2 8 8 N 1.47144 * 108.16614 * 172.37511 * 7 5 3 9 9 C 1.34774 * 120.98646 * 129.42875 * 8 7 5 10 10 O 1.21273 * 120.00504 * 179.72021 * 9 8 7 11 11 C 1.50702 * 119.99687 * 359.72791 * 9 8 7 12 12 C 1.53001 * 109.47327 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.46995 * 179.97438 * 12 11 9 14 14 H 1.07991 * 120.00449 * 359.72153 * 13 12 11 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48493 * 109.47326 * 90.00142 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47210 * 329.99603 * 17 15 13 21 21 C 1.47160 * 118.03486 * 309.16544 * 8 7 5 22 22 C 1.53294 * 108.38369 * 50.77915 * 21 8 7 23 23 H 1.08998 * 109.50750 * 187.77309 * 22 21 8 24 24 C 1.53004 * 109.51282 * 67.62678 * 22 21 8 25 25 O 1.42955 * 109.51397 * 184.99731 * 5 3 2 26 26 H 1.09001 * 109.47640 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47624 * 300.00363 * 1 2 3 28 28 H 1.08999 * 109.47586 * 60.00063 * 1 2 3 29 29 H 1.09004 * 109.83436 * 52.69334 * 7 5 3 30 30 H 1.09002 * 109.75017 * 292.00958 * 7 5 3 31 31 H 1.08998 * 109.47519 * 59.99364 * 11 9 8 32 32 H 1.09006 * 109.47270 * 299.99595 * 11 9 8 33 33 H 1.08998 * 109.47065 * 59.99424 * 12 11 9 34 34 H 1.09001 * 109.46892 * 299.99688 * 12 11 9 35 35 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.68152 * 170.50434 * 21 8 7 37 37 H 1.09001 * 109.67523 * 291.01995 * 21 8 7 38 38 H 1.08996 * 109.47160 * 59.99381 * 24 22 21 39 39 H 1.08995 * 109.47071 * 179.97438 * 24 22 21 40 40 H 1.08997 * 109.46819 * 299.99702 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9610 0.7037 0.8398 7 6 4.1084 0.6989 -1.3186 8 7 5.5564 0.9556 -1.3703 9 6 6.4275 -0.0356 -1.6443 10 8 7.6169 0.1971 -1.6874 11 6 5.9234 -1.4331 -1.8974 12 6 7.1079 -2.3587 -2.1825 13 6 6.6038 -3.7562 -2.4349 14 1 5.5450 -3.9645 -2.3915 15 6 7.4949 -4.7702 -2.7162 16 7 8.7842 -4.5164 -2.7696 17 14 6.8707 -6.5041 -3.0216 18 1 6.5934 -6.6826 -4.4694 19 1 7.9000 -7.4837 -2.5901 20 1 5.6225 -6.7243 -2.2477 21 6 6.0248 2.3280 -1.1197 22 6 5.3890 2.8256 0.1834 23 1 5.6118 3.8842 0.3161 24 6 5.9535 2.0316 1.3632 25 8 3.9730 2.6402 0.1169 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 3.6192 1.1841 -2.1632 30 1 3.9245 -0.3749 -1.3547 31 1 5.2523 -1.4273 -2.7562 32 1 5.3861 -1.7902 -1.0188 33 1 7.7793 -2.3645 -1.3239 34 1 7.6448 -2.0014 -3.0613 35 1 9.4110 -5.2297 -2.9679 36 1 7.1106 2.3335 -1.0239 37 1 5.7259 2.9743 -1.9449 38 1 7.0336 2.1698 1.4105 39 1 5.5013 2.3863 2.2894 40 1 5.7280 0.9736 1.2302 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360566259.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:19 Heat of formation + Delta-G solvation = -184.718906 kcal Electronic energy + Delta-G solvation = -23379.603308 eV Core-core repulsion = 19773.062850 eV Total energy + Delta-G solvation = -3606.540458 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.10316 -41.12983 -39.62870 -37.56550 -35.92065 -35.60150 -34.01353 -32.84855 -30.88300 -28.70189 -28.38783 -26.81117 -25.85903 -23.84326 -22.59643 -21.29792 -20.08682 -19.13575 -18.83519 -18.17013 -17.76933 -17.54745 -17.33265 -16.73750 -16.55251 -16.39312 -15.82087 -15.64941 -15.15382 -14.85995 -14.46065 -14.21818 -14.04572 -14.00584 -13.44333 -13.43187 -13.04678 -13.00350 -12.92185 -12.80689 -12.48312 -12.42288 -11.94693 -11.91077 -11.83174 -11.60747 -11.51166 -11.29554 -11.27289 -10.71765 -10.54102 -9.69899 -8.15561 -6.29040 0.92298 1.22252 1.44895 1.47032 1.57859 1.61245 1.79121 2.45104 2.82993 3.18135 3.36407 3.48575 3.61204 3.77266 3.91379 3.97029 4.10868 4.21476 4.32328 4.37264 4.40553 4.48570 4.53610 4.57827 4.67157 4.76011 4.76977 4.86662 5.04541 5.16034 5.22005 5.36958 5.53256 5.64468 5.81847 5.87225 6.18797 6.21569 6.59007 6.89128 7.15659 7.41300 8.97067 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.004483 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.184178 B = 6244.345593 C = 7644.473178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.479 3.521 4 O -0.515 6.515 5 C 0.085 3.915 6 H 0.119 0.881 7 C 0.089 3.911 8 N -0.614 5.614 9 C 0.519 3.481 10 O -0.576 6.576 11 C -0.120 4.120 12 C 0.043 3.957 13 C -0.540 4.540 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.938 5.938 17 Si 0.971 3.029 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.254 1.254 21 C 0.074 3.926 22 C 0.084 3.916 23 H 0.149 0.851 24 C -0.184 4.184 25 O -0.363 6.363 26 H 0.134 0.866 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.108 0.892 33 H -0.016 1.016 34 H -0.018 1.018 35 H 0.262 0.738 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.559 12.430 7.464 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.320 3.680 4 O -0.402 6.402 5 C 0.025 3.975 6 H 0.136 0.864 7 C -0.034 4.034 8 N -0.349 5.349 9 C 0.310 3.690 10 O -0.455 6.455 11 C -0.160 4.160 12 C 0.006 3.994 13 C -0.578 4.578 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.578 5.578 17 Si 0.795 3.205 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.177 1.177 21 C -0.048 4.048 22 C 0.027 3.973 23 H 0.166 0.834 24 C -0.242 4.242 25 O -0.282 6.282 26 H 0.152 0.848 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.143 0.857 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.002 0.998 34 H 0.000 1.000 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.132 12.921 7.421 21.961 hybrid contribution 0.381 -0.859 -0.275 0.980 sum -15.751 12.062 7.146 21.087 Atomic orbital electron populations 1.23654 0.73791 1.06107 1.02906 1.86497 1.25594 1.31338 1.83469 1.22997 0.90731 0.81862 0.72372 1.90680 1.67179 1.37302 1.45062 1.21853 0.87931 0.86905 1.00814 0.86403 1.22458 0.79893 1.04564 0.96533 1.48164 1.06620 1.08995 1.71114 1.21363 0.85532 0.87677 0.74390 1.90657 1.18167 1.84111 1.52548 1.21705 1.00665 0.89388 1.04206 1.18689 0.92677 0.93440 0.94639 1.21703 0.94258 0.94056 1.47789 0.90444 1.26096 0.94879 1.04221 0.95067 1.70175 1.03105 1.34399 1.50129 0.85362 0.78391 0.78029 0.78722 1.19865 1.21396 1.17737 1.22474 1.01474 0.82229 0.98636 1.22864 0.78506 1.02746 0.93233 0.83392 1.22397 1.02634 1.00388 0.98760 1.88057 1.23572 1.22304 1.94304 0.84766 0.91586 0.91482 0.88865 0.85655 0.87752 0.87422 0.99750 0.99961 0.92935 0.88936 0.89443 0.90693 0.90109 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.46 10.56 -51.33 -0.54 -7.00 16 3 C 0.48 10.48 7.29 71.24 0.52 11.00 16 4 O -0.51 -14.21 16.26 28.38 0.46 -13.75 16 5 C 0.08 1.75 2.93 30.09 0.09 1.83 16 6 H 0.12 2.20 6.25 -2.38 -0.01 2.19 16 7 C 0.09 1.87 5.84 86.50 0.50 2.37 16 8 N -0.61 -16.63 2.53 -816.55 -2.07 -18.70 16 9 C 0.52 19.30 7.71 87.66 0.68 19.98 16 10 O -0.58 -26.98 15.45 -3.01 -0.05 -27.02 16 11 C -0.12 -4.60 4.01 29.85 0.12 -4.48 16 12 C 0.04 2.33 4.26 29.85 0.13 2.46 16 13 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 14 H 0.08 3.86 7.74 -2.92 -0.02 3.84 16 15 C -0.01 -0.30 5.46 84.66 0.46 0.17 16 16 N -0.94 -58.60 13.29 21.45 0.28 -58.32 16 17 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 20 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 21 C 0.07 1.72 6.02 86.35 0.52 2.24 16 22 C 0.08 1.57 3.93 30.69 0.12 1.69 16 23 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 24 C -0.18 -3.49 8.81 71.98 0.63 -2.86 16 25 O -0.36 -8.11 9.76 -129.98 -1.27 -9.38 16 26 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 28 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 29 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.13 2.39 6.05 -2.39 -0.01 2.37 16 31 H 0.10 3.51 8.00 -2.39 -0.02 3.50 16 32 H 0.11 3.55 7.67 -2.38 -0.02 3.53 16 33 H -0.02 -0.97 8.10 -2.39 -0.02 -0.99 16 34 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 35 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.09 2.44 7.08 -2.39 -0.02 2.43 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.09 6.11 -2.39 -0.01 1.07 16 Total: -1.00 -78.37 333.15 5.08 -73.29 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.04 Total: 9.18 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 5.20 Total: 6.35 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -1.78 Total: -77.02 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -1.40 Total: -57.16 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -78.37 5.08 -73.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360566259.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.427 kcal (2) G-P(sol) polarization free energy of solvation -78.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds