Wall clock time and date at job start Tue Mar 31 2020 02:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45188 * 1 3 3 C 1.34235 * 117.00454 * 2 1 4 4 O 1.20831 * 119.99402 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00331 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47002 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.70756 * 318.19851 * 6 5 3 8 8 C 1.52874 * 109.62065 * 197.89166 * 6 5 3 9 9 O 1.42956 * 109.30165 * 188.11436 * 8 6 5 10 10 C 1.42966 * 114.16739 * 62.44905 * 9 8 6 11 11 C 1.53293 * 109.22012 * 297.42316 * 10 9 8 12 12 N 1.47147 * 108.38846 * 52.30175 * 11 10 9 13 13 C 1.34772 * 120.98454 * 129.44285 * 12 11 10 14 14 O 1.21281 * 120.00131 * 175.22992 * 13 12 11 15 15 C 1.50702 * 120.00178 * 355.22918 * 13 12 11 16 16 C 1.53004 * 109.47372 * 180.02562 * 15 13 12 17 17 C 1.50692 * 109.46986 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00435 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00104 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99663 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00383 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47200 * 270.00124 * 21 19 17 23 23 H 1.48503 * 109.47019 * 30.00132 * 21 19 17 24 24 H 1.48496 * 109.47154 * 150.00363 * 21 19 17 25 25 H 1.08995 * 109.47516 * 59.99742 * 1 2 3 26 26 H 1.09001 * 109.47252 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47381 * 300.00098 * 1 2 3 28 28 H 1.08992 * 109.46781 * 60.00093 * 5 3 2 29 29 H 1.08997 * 109.47033 * 299.99972 * 5 3 2 30 30 H 1.09004 * 109.58121 * 68.09836 * 8 6 5 31 31 H 1.09004 * 109.36507 * 308.00158 * 8 6 5 32 32 H 1.08993 * 109.51188 * 177.49651 * 10 9 8 33 33 H 1.09008 * 109.55296 * 57.36714 * 10 9 8 34 34 H 1.08997 * 109.67984 * 292.57273 * 11 10 9 35 35 H 1.09007 * 109.71131 * 172.04181 * 11 10 9 36 36 H 1.09006 * 109.47067 * 59.99898 * 15 13 12 37 37 H 1.08995 * 109.46626 * 299.99905 * 15 13 12 38 38 H 1.08994 * 109.46996 * 59.99636 * 16 15 13 39 39 H 1.09006 * 109.46481 * 299.99689 * 16 15 13 40 40 H 0.96998 * 120.00068 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.3705 3.3113 -0.6850 8 6 5.4596 2.8457 -0.4441 9 8 5.9144 4.1887 -0.2623 10 6 5.9016 4.6321 1.0968 11 6 4.4598 4.6224 1.6173 12 7 3.8815 3.2944 1.3577 13 6 3.2663 2.6021 2.3368 14 8 2.7206 1.5489 2.0839 15 6 3.2566 3.1365 3.7458 16 6 2.4989 2.1661 4.6542 17 6 2.4897 2.7002 6.0632 18 1 2.9753 3.6383 6.2884 19 6 1.8605 1.9920 7.0649 20 7 1.2687 0.8499 6.7907 21 14 1.8484 2.6544 8.8115 22 1 3.0383 2.1477 9.5413 23 1 1.8831 4.1386 8.7781 24 1 0.6143 2.2035 9.5034 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.9556 0.7809 -0.8908 29 1 3.9563 0.7805 0.8891 30 1 5.5424 2.5725 -1.4961 31 1 6.0686 2.1705 0.1571 32 1 6.3023 5.6441 1.1534 33 1 6.5124 3.9641 1.7042 34 1 3.8773 5.3841 1.0991 35 1 4.4544 4.8220 2.6889 36 1 2.7647 4.1092 3.7621 37 1 4.2814 3.2416 4.1016 38 1 2.9910 1.1937 4.6378 39 1 1.4739 2.0606 4.2985 40 1 1.2753 0.5057 5.8839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362244884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:45 Heat of formation + Delta-G solvation = -156.254651 kcal Electronic energy + Delta-G solvation = -24027.967563 eV Core-core repulsion = 20422.661409 eV Total energy + Delta-G solvation = -3605.306155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.02106 -39.55312 -38.29397 -36.11906 -34.77181 -34.10507 -33.17864 -30.72436 -29.32598 -27.85533 -26.53643 -25.33097 -23.58210 -22.58458 -21.29470 -20.52036 -18.84166 -17.64891 -17.19000 -16.73841 -16.53622 -16.34422 -15.94650 -15.63638 -15.31716 -15.01402 -14.76380 -13.89624 -13.78759 -13.68521 -13.25710 -13.06166 -12.67640 -12.49969 -12.34115 -11.90171 -11.73414 -11.65204 -11.49910 -11.40641 -11.03833 -10.84641 -10.44578 -10.35499 -10.17259 -10.15090 -10.09759 -9.95189 -8.98169 -8.56502 -8.49908 -8.30924 -6.34951 -4.05355 2.61337 2.91738 3.00294 3.14472 3.42753 3.46928 3.57600 3.62426 4.47320 4.51443 4.56778 4.74568 4.84260 4.96750 5.07669 5.15863 5.26202 5.31416 5.33040 5.37428 5.42865 5.44662 5.53109 5.54934 5.65989 5.79490 5.89948 5.99326 6.05188 6.49181 6.66454 6.79050 6.83468 7.46373 7.49567 7.52317 8.15145 8.21709 8.44858 8.49687 8.88483 9.68346 11.05908 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.005459 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.541560 B = 5127.876404 C = 6698.619058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.361 6.361 3 C 0.502 3.498 4 O -0.527 6.527 5 C -0.106 4.106 6 C 0.121 3.879 7 H 0.090 0.910 8 C 0.054 3.946 9 O -0.377 6.377 10 C 0.046 3.954 11 C 0.075 3.925 12 N -0.618 5.618 13 C 0.525 3.475 14 O -0.533 6.533 15 C -0.121 4.121 16 C 0.027 3.973 17 C -0.609 4.609 18 H 0.049 0.951 19 C 0.016 3.984 20 N -0.910 5.910 21 Si 1.073 2.927 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.284 1.284 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.014 0.986 39 H 0.014 0.986 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.454 4.174 -15.997 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.278 6.278 3 C 0.347 3.653 4 O -0.417 6.417 5 C -0.143 4.143 6 C 0.017 3.983 7 H 0.108 0.892 8 C -0.023 4.023 9 O -0.295 6.295 10 C -0.032 4.032 11 C -0.049 4.049 12 N -0.354 5.354 13 C 0.317 3.683 14 O -0.411 6.411 15 C -0.160 4.160 16 C -0.011 4.011 17 C -0.647 4.647 18 H 0.067 0.933 19 C -0.189 4.189 20 N -0.546 5.546 21 Si 0.901 3.099 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.210 1.210 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.143 0.857 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.457 3.695 -14.731 16.919 hybrid contribution 0.216 0.353 -1.283 1.348 sum 7.672 4.048 -16.013 18.212 Atomic orbital electron populations 1.23117 0.76937 1.02984 1.02157 1.86417 1.22937 1.33798 1.84649 1.22701 0.91192 0.81217 0.70173 1.90606 1.66996 1.36334 1.47734 1.21536 0.90113 0.96952 1.05727 1.21634 0.97311 0.93897 0.85414 0.89239 1.22944 0.92599 0.84420 1.02380 1.87959 1.85881 1.29289 1.26408 1.23040 0.95611 1.01267 0.83239 1.22437 0.94441 0.84677 1.03297 1.48213 1.58547 1.19096 1.09526 1.21527 0.75635 0.83549 0.87586 1.90427 1.44396 1.24138 1.82148 1.21757 1.02844 1.02107 0.89328 1.19002 0.94957 0.93699 0.93406 1.22035 1.39699 1.09209 0.93762 0.93260 1.25849 0.93304 0.94893 1.04821 1.70711 1.41021 1.19106 1.23771 0.83502 0.76723 0.75000 0.74686 1.21454 1.21506 1.20977 0.92683 0.88674 0.91867 0.89079 0.85680 0.87462 0.92218 0.87450 0.92265 0.90509 0.87938 0.89983 0.90027 0.96758 0.96809 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.56 101.05 1.07 1.68 16 2 O -0.36 -6.21 10.56 -41.94 -0.44 -6.65 16 3 C 0.50 8.90 5.11 36.00 0.18 9.08 16 4 O -0.53 -10.70 14.64 -25.80 -0.38 -11.08 16 5 C -0.11 -1.47 4.86 -27.88 -0.14 -1.61 16 6 C 0.12 1.60 2.67 -67.64 -0.18 1.42 16 7 H 0.09 1.27 7.43 -51.93 -0.39 0.88 16 8 C 0.05 0.55 6.19 37.09 0.23 0.77 16 9 O -0.38 -4.16 10.74 -35.23 -0.38 -4.54 16 10 C 0.05 0.44 6.99 37.31 0.26 0.70 16 11 C 0.07 0.86 6.55 -3.54 -0.02 0.84 16 12 N -0.62 -9.28 3.02 -164.99 -0.50 -9.78 16 13 C 0.52 10.08 7.09 -10.99 -0.08 10.00 16 14 O -0.53 -11.68 9.58 -19.16 -0.18 -11.86 16 15 C -0.12 -2.47 4.00 -27.88 -0.11 -2.58 16 16 C 0.03 0.72 3.57 -27.88 -0.10 0.62 16 17 C -0.61 -17.43 9.11 -34.44 -0.31 -17.75 16 18 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 19 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 20 N -0.91 -28.73 13.65 55.43 0.76 -27.97 16 21 Si 1.07 25.46 29.90 -169.99 -5.08 20.37 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 26 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 28 H 0.09 0.90 8.02 -51.93 -0.42 0.49 16 29 H 0.13 1.96 6.18 -51.93 -0.32 1.64 16 30 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.13 6.04 -51.92 -0.31 0.82 16 36 H 0.08 1.60 7.83 -51.93 -0.41 1.19 16 37 H 0.08 1.51 7.85 -51.93 -0.41 1.10 16 38 H 0.01 0.40 7.97 -51.93 -0.41 -0.01 16 39 H 0.01 0.40 7.97 -51.93 -0.41 -0.01 16 40 H 0.27 8.72 7.22 -40.82 -0.29 8.43 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -36.57 324.94 -6.57 -43.14 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.96 Total: -0.06 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 0.70 Total: 3.54 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.26 Total: -37.75 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -1.38 Total: -34.14 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.57 -6.57 -43.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362244884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.115 kcal (2) G-P(sol) polarization free energy of solvation -36.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds