Wall clock time and date at job start Tue Mar 31 2020 02:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45188 * 1 3 3 C 1.34235 * 117.00454 * 2 1 4 4 O 1.20831 * 119.99402 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00331 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47002 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.70756 * 318.19851 * 6 5 3 8 8 C 1.52874 * 109.62065 * 197.89166 * 6 5 3 9 9 O 1.42956 * 109.30165 * 188.11436 * 8 6 5 10 10 C 1.42966 * 114.16739 * 62.44905 * 9 8 6 11 11 C 1.53293 * 109.22012 * 297.42316 * 10 9 8 12 12 N 1.47147 * 108.38846 * 52.30175 * 11 10 9 13 13 C 1.34772 * 120.98454 * 129.44285 * 12 11 10 14 14 O 1.21281 * 120.00131 * 175.22992 * 13 12 11 15 15 C 1.50702 * 120.00178 * 355.22918 * 13 12 11 16 16 C 1.53004 * 109.47372 * 180.02562 * 15 13 12 17 17 C 1.50692 * 109.46986 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00435 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00104 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99663 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00383 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47200 * 270.00124 * 21 19 17 23 23 H 1.48503 * 109.47019 * 30.00132 * 21 19 17 24 24 H 1.48496 * 109.47154 * 150.00363 * 21 19 17 25 25 H 1.08995 * 109.47516 * 59.99742 * 1 2 3 26 26 H 1.09001 * 109.47252 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47381 * 300.00098 * 1 2 3 28 28 H 1.08992 * 109.46781 * 60.00093 * 5 3 2 29 29 H 1.08997 * 109.47033 * 299.99972 * 5 3 2 30 30 H 1.09004 * 109.58121 * 68.09836 * 8 6 5 31 31 H 1.09004 * 109.36507 * 308.00158 * 8 6 5 32 32 H 1.08993 * 109.51188 * 177.49651 * 10 9 8 33 33 H 1.09008 * 109.55296 * 57.36714 * 10 9 8 34 34 H 1.08997 * 109.67984 * 292.57273 * 11 10 9 35 35 H 1.09007 * 109.71131 * 172.04181 * 11 10 9 36 36 H 1.09006 * 109.47067 * 59.99898 * 15 13 12 37 37 H 1.08995 * 109.46626 * 299.99905 * 15 13 12 38 38 H 1.08994 * 109.46996 * 59.99636 * 16 15 13 39 39 H 1.09006 * 109.46481 * 299.99689 * 16 15 13 40 40 H 0.96998 * 120.00068 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.3705 3.3113 -0.6850 8 6 5.4596 2.8457 -0.4441 9 8 5.9144 4.1887 -0.2623 10 6 5.9016 4.6321 1.0968 11 6 4.4598 4.6224 1.6173 12 7 3.8815 3.2944 1.3577 13 6 3.2663 2.6021 2.3368 14 8 2.7206 1.5489 2.0839 15 6 3.2566 3.1365 3.7458 16 6 2.4989 2.1661 4.6542 17 6 2.4897 2.7002 6.0632 18 1 2.9753 3.6383 6.2884 19 6 1.8605 1.9920 7.0649 20 7 1.2687 0.8499 6.7907 21 14 1.8484 2.6544 8.8115 22 1 3.0383 2.1477 9.5413 23 1 1.8831 4.1386 8.7781 24 1 0.6143 2.2035 9.5034 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.9556 0.7809 -0.8908 29 1 3.9563 0.7805 0.8891 30 1 5.5424 2.5725 -1.4961 31 1 6.0686 2.1705 0.1571 32 1 6.3023 5.6441 1.1534 33 1 6.5124 3.9641 1.7042 34 1 3.8773 5.3841 1.0991 35 1 4.4544 4.8220 2.6889 36 1 2.7647 4.1092 3.7621 37 1 4.2814 3.2416 4.1016 38 1 2.9910 1.1937 4.6378 39 1 1.4739 2.0606 4.2985 40 1 1.2753 0.5057 5.8839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362244884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:44 Heat of formation + Delta-G solvation = -181.716154 kcal Electronic energy + Delta-G solvation = -24029.071657 eV Core-core repulsion = 20422.661409 eV Total energy + Delta-G solvation = -3606.410249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.28258 -40.84281 -39.44622 -37.49309 -36.12814 -35.89140 -34.52763 -32.56313 -30.40595 -29.03634 -27.62924 -27.22808 -24.76735 -24.17228 -22.64608 -21.89169 -20.19298 -19.14548 -18.75627 -18.16830 -17.82282 -17.60015 -17.17154 -16.81126 -16.53845 -15.99711 -15.89070 -15.63599 -15.50219 -15.08011 -14.46791 -14.37458 -14.22669 -14.10175 -13.63438 -13.41863 -13.09729 -13.02185 -12.72049 -12.67103 -12.32519 -12.10744 -12.07302 -11.92085 -11.84440 -11.78223 -11.53441 -11.25226 -10.81629 -10.58384 -10.34874 -9.64835 -8.72532 -6.44590 1.21784 1.52064 1.62767 1.64802 1.74402 1.79545 1.88863 2.56828 2.80279 3.14170 3.38596 3.57378 3.77076 3.86491 3.96547 4.09916 4.16426 4.20704 4.22872 4.23282 4.26203 4.30431 4.41454 4.50078 4.57563 4.61271 4.73509 4.80448 4.88401 4.93494 5.22124 5.31159 5.41123 5.50436 5.89455 6.04424 6.10935 6.21303 6.47912 6.86470 7.04908 7.41365 8.67132 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.005459 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.541560 B = 5127.876404 C = 6698.619058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.372 6.372 3 C 0.493 3.507 4 O -0.562 6.562 5 C -0.102 4.102 6 C 0.119 3.881 7 H 0.081 0.919 8 C 0.062 3.938 9 O -0.385 6.385 10 C 0.050 3.950 11 C 0.065 3.935 12 N -0.610 5.610 13 C 0.519 3.481 14 O -0.571 6.571 15 C -0.110 4.110 16 C 0.034 3.966 17 C -0.619 4.619 18 H 0.066 0.934 19 C -0.044 4.044 20 N -0.939 5.939 21 Si 1.126 2.874 22 H -0.269 1.269 23 H -0.262 1.262 24 H -0.287 1.287 25 H 0.069 0.931 26 H 0.129 0.871 27 H 0.031 0.969 28 H 0.137 0.863 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.068 0.932 32 H 0.137 0.863 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.107 0.893 38 H -0.017 1.017 39 H -0.029 1.029 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.716 5.827 -16.470 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.289 6.289 3 C 0.340 3.660 4 O -0.454 6.454 5 C -0.139 4.139 6 C 0.016 3.984 7 H 0.099 0.901 8 C -0.015 4.015 9 O -0.303 6.303 10 C -0.027 4.027 11 C -0.057 4.057 12 N -0.344 5.344 13 C 0.310 3.690 14 O -0.452 6.452 15 C -0.149 4.149 16 C -0.003 4.003 17 C -0.656 4.656 18 H 0.085 0.915 19 C -0.241 4.241 20 N -0.576 5.576 21 Si 0.946 3.054 22 H -0.194 1.194 23 H -0.186 1.186 24 H -0.213 1.213 25 H 0.088 0.912 26 H 0.147 0.853 27 H 0.050 0.950 28 H 0.155 0.845 29 H 0.126 0.874 30 H 0.156 0.844 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.002 0.998 39 H -0.011 1.011 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.767 5.384 -15.253 18.895 hybrid contribution -0.526 -0.156 -1.210 1.329 sum 9.241 5.228 -16.463 19.590 Atomic orbital electron populations 1.23311 0.75938 1.04995 1.01320 1.86415 1.24170 1.33908 1.84398 1.23554 0.92769 0.80749 0.68921 1.90569 1.68098 1.37313 1.49424 1.21599 0.87386 0.97934 1.06986 1.21862 0.99664 0.93033 0.83873 0.90139 1.23030 0.89782 0.84403 1.04317 1.87963 1.85574 1.29649 1.27141 1.23159 0.93824 1.03116 0.82606 1.22766 0.95988 0.82817 1.04090 1.48215 1.56932 1.19817 1.09478 1.21212 0.76242 0.83528 0.87975 1.90433 1.46238 1.25821 1.82742 1.21516 1.03257 1.00571 0.89590 1.18790 0.93088 0.93974 0.94491 1.22501 1.38996 1.09634 0.94495 0.91546 1.27661 0.92296 0.94313 1.09820 1.70876 1.43338 1.20942 1.22439 0.82850 0.77228 0.75962 0.69348 1.19389 1.18588 1.21294 0.91198 0.85316 0.94970 0.84482 0.87382 0.84352 0.91402 0.84524 0.91780 0.89907 0.87376 0.88869 0.87517 0.99820 1.01108 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 10.56 113.37 1.20 2.33 16 2 O -0.37 -13.13 10.56 -48.90 -0.52 -13.64 16 3 C 0.49 17.84 5.11 71.23 0.36 18.20 16 4 O -0.56 -23.58 14.64 28.68 0.42 -23.16 16 5 C -0.10 -2.75 4.86 29.85 0.15 -2.60 16 6 C 0.12 2.94 2.67 44.82 0.12 3.06 16 7 H 0.08 2.18 7.43 -2.39 -0.02 2.17 16 8 C 0.06 1.04 6.19 71.94 0.45 1.48 16 9 O -0.39 -7.11 10.74 -148.98 -1.60 -8.71 16 10 C 0.05 0.78 6.99 72.08 0.50 1.28 16 11 C 0.07 1.36 6.55 86.35 0.57 1.93 16 12 N -0.61 -17.71 3.02 -794.30 -2.40 -20.11 16 13 C 0.52 20.24 7.09 87.66 0.62 20.86 16 14 O -0.57 -26.19 9.58 20.60 0.20 -25.99 16 15 C -0.11 -4.51 4.00 29.85 0.12 -4.39 16 16 C 0.03 1.90 3.57 29.85 0.11 2.01 16 17 C -0.62 -35.75 9.11 25.60 0.23 -35.52 16 18 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 19 C -0.04 -2.63 5.46 84.65 0.46 -2.17 16 20 N -0.94 -61.37 13.65 21.45 0.29 -61.07 16 21 Si 1.13 50.49 29.90 68.60 2.05 52.55 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 25 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 26 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.03 1.14 8.13 -2.39 -0.02 1.12 16 28 H 0.14 2.36 8.02 -2.39 -0.02 2.34 16 29 H 0.11 3.40 6.18 -2.39 -0.01 3.39 16 30 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.07 8.13 -2.38 -0.02 1.05 16 32 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.11 2.12 6.04 -2.38 -0.01 2.10 16 36 H 0.09 3.58 7.83 -2.38 -0.02 3.57 16 37 H 0.11 3.79 7.85 -2.39 -0.02 3.78 16 38 H -0.02 -1.01 7.97 -2.39 -0.02 -1.03 16 39 H -0.03 -1.87 7.97 -2.38 -0.02 -1.89 16 40 H 0.25 17.09 7.22 -92.71 -0.67 16.42 16 Total: -1.00 -84.04 324.94 4.46 -79.58 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 1.13 Total: 14.09 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 4.88 Total: 6.48 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -2.11 Total: -81.18 kcal Atomic # 8 Polarization: -70.00 SS G_CDS: -1.50 Total: -71.50 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.05 Total: 52.55 kcal Total: -84.04 4.46 -79.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362244884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.140 kcal (2) G-P(sol) polarization free energy of solvation -84.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds