Wall clock time and date at job start Tue Mar 31 2020 02:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.87265 * 40.69730 * 5 3 2 7 7 C 1.54328 * 109.88178 * 279.68630 * 5 3 2 8 8 C 1.55403 * 102.82869 * 218.48047 * 7 5 3 9 9 H 1.08995 * 111.03883 * 153.46880 * 8 7 5 10 10 O 1.42893 * 110.89211 * 277.26952 * 8 7 5 11 11 C 1.42896 * 113.99993 * 203.68741 * 10 8 7 12 12 C 1.54910 * 101.66230 * 35.33513 * 8 7 5 13 13 N 1.47012 * 109.88304 * 161.71841 * 5 3 2 14 14 C 1.34776 * 125.64866 * 298.32222 * 13 5 3 15 15 O 1.21282 * 120.00033 * 359.97438 * 14 13 5 16 16 C 1.50699 * 120.00183 * 180.02562 * 14 13 5 17 17 C 1.52998 * 109.47396 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47396 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99982 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00017 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00237 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99960 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46954 * 59.99851 * 22 20 18 24 24 H 1.48504 * 109.47142 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47155 * 300.00025 * 22 20 18 26 26 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 28 28 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 29 29 H 1.09000 * 110.71927 * 336.75328 * 7 5 3 30 30 H 1.09000 * 110.72044 * 100.02330 * 7 5 3 31 31 H 1.08999 * 109.47118 * 299.99831 * 11 10 8 32 32 H 1.09000 * 109.46997 * 59.99758 * 11 10 8 33 33 H 1.09002 * 109.47401 * 179.97438 * 11 10 8 34 34 H 1.08997 * 110.36530 * 204.23235 * 12 8 7 35 35 H 1.09006 * 110.45722 * 81.96288 * 12 8 7 36 36 H 1.09003 * 109.47196 * 300.00022 * 16 14 13 37 37 H 1.09000 * 109.47327 * 59.99815 * 16 14 13 38 38 H 1.09003 * 109.47229 * 300.00324 * 17 16 14 39 39 H 1.09008 * 109.46804 * 60.00064 * 17 16 14 40 40 H 0.96996 * 120.00071 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9773 0.5181 -0.6675 7 6 4.1026 1.0589 1.4314 8 6 5.2844 2.0648 1.5126 9 1 5.4656 2.3734 2.5421 10 8 6.4659 1.5109 0.9304 11 6 7.6789 2.0927 1.4123 12 6 4.7490 3.2458 0.6650 13 7 3.9970 2.6119 -0.4332 14 6 3.7467 3.1661 -1.6360 15 8 3.1158 2.5495 -2.4682 16 6 4.2516 4.5514 -1.9472 17 6 3.8346 4.9393 -3.3672 18 6 4.3390 6.3248 -3.6782 19 1 4.9013 6.8738 -2.9373 20 6 4.0828 6.8917 -4.9086 21 7 3.3986 6.2231 -5.8111 22 14 4.7074 8.6095 -5.2939 23 1 6.1886 8.6326 -5.1897 24 1 4.3027 8.9859 -6.6722 25 1 4.1281 9.5755 -4.3262 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.3388 1.3014 2.1703 30 1 4.4547 0.0354 1.5609 31 1 7.6822 3.1603 1.1926 32 1 7.7506 1.9432 2.4896 33 1 8.5292 1.6180 0.9226 34 1 5.5766 3.8338 0.2683 35 1 4.0895 3.8753 1.2625 36 1 3.8272 5.2610 -1.2369 37 1 5.3388 4.5675 -1.8711 38 1 4.2594 4.2296 -4.0773 39 1 2.7473 4.9231 -3.4438 40 1 3.2187 6.6218 -6.6768 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362783451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:24 Heat of formation + Delta-G solvation = -189.327688 kcal Electronic energy + Delta-G solvation = -23352.908223 eV Core-core repulsion = 19746.167914 eV Total energy + Delta-G solvation = -3606.740309 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.14562 -40.69757 -39.41897 -37.69996 -36.93323 -35.62494 -33.41892 -32.17871 -30.82226 -28.47691 -27.85889 -27.31850 -25.27530 -23.79715 -22.71639 -21.77225 -20.19315 -19.15596 -18.92832 -18.02851 -17.82183 -17.63419 -17.17838 -16.50232 -16.45094 -16.30215 -15.91546 -15.64340 -15.04086 -14.64673 -14.34698 -14.25462 -14.10367 -13.81497 -13.73172 -13.35018 -13.19313 -12.83537 -12.79852 -12.69220 -12.61975 -12.49374 -11.98772 -11.89770 -11.83658 -11.68383 -11.63451 -11.36576 -10.92688 -10.62110 -10.58299 -9.83554 -8.19638 -6.34940 0.97698 1.34481 1.40733 1.46302 1.53996 1.70850 2.01751 2.42115 2.75816 3.13017 3.29459 3.34617 3.71129 3.85710 4.01187 4.08724 4.23251 4.24827 4.38058 4.40726 4.42605 4.55000 4.60695 4.64051 4.71101 4.71661 4.77282 4.85487 4.94218 5.02508 5.15732 5.25934 5.44923 5.55686 5.80329 6.13162 6.28222 6.30304 6.60966 6.82218 7.11247 7.35478 8.93354 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015456 B = 0.004637 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.187176 B = 6036.367063 C = 7492.318914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.451 3.549 4 O -0.531 6.531 5 C 0.140 3.860 6 H 0.104 0.896 7 C -0.098 4.098 8 C 0.085 3.915 9 H 0.137 0.863 10 O -0.397 6.397 11 C 0.022 3.978 12 C 0.065 3.935 13 N -0.603 5.603 14 C 0.528 3.472 15 O -0.585 6.585 16 C -0.107 4.107 17 C 0.045 3.955 18 C -0.544 4.544 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.939 5.939 22 Si 0.979 3.021 23 H -0.259 1.259 24 H -0.287 1.287 25 H -0.262 1.262 26 H 0.140 0.860 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.113 0.887 30 H 0.129 0.871 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.107 0.893 38 H -0.017 1.017 39 H -0.024 1.024 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.559 -11.839 23.575 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.294 3.706 4 O -0.420 6.420 5 C 0.035 3.965 6 H 0.122 0.878 7 C -0.136 4.136 8 C 0.027 3.973 9 H 0.154 0.846 10 O -0.316 6.316 11 C -0.073 4.073 12 C -0.056 4.056 13 N -0.338 5.338 14 C 0.320 3.680 15 O -0.465 6.465 16 C -0.147 4.147 17 C 0.007 3.993 18 C -0.582 4.582 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.802 3.198 23 H -0.183 1.183 24 H -0.213 1.213 25 H -0.187 1.187 26 H 0.158 0.842 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.131 0.869 30 H 0.148 0.852 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.001 0.999 39 H -0.006 1.006 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.909 -11.976 22.754 26.177 hybrid contribution -0.562 0.966 -1.042 1.528 sum 4.347 -11.010 21.711 24.728 Atomic orbital electron populations 1.23540 0.74917 1.05889 1.02035 1.86472 1.24929 1.32324 1.83730 1.24611 0.93140 0.81535 0.71344 1.90662 1.67686 1.37691 1.45921 1.21361 0.85556 0.87841 1.01781 0.87839 1.22862 0.97003 1.03615 0.90097 1.23416 0.85135 0.91104 0.97690 0.84587 1.87958 1.14396 1.61890 1.67327 1.23016 0.85683 0.98527 1.00116 1.23345 0.96534 0.97409 0.88336 1.48401 1.54831 1.16457 1.14110 1.21206 0.77979 0.89028 0.79800 1.90644 1.42297 1.65018 1.48522 1.21576 1.02651 0.90668 0.99759 1.18676 0.94291 0.95471 0.90849 1.21638 1.35254 1.00985 1.00308 0.90392 1.26194 0.95130 1.03072 0.96069 1.70189 1.41061 1.40082 1.06577 0.85310 0.79274 0.78087 0.77174 1.18345 1.21255 1.18665 0.84176 0.91100 0.94017 0.86875 0.85249 0.93353 0.91460 0.89363 0.88633 0.88495 0.88306 0.87539 0.99885 1.00605 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.83 16 2 O -0.36 -9.87 10.57 -51.46 -0.54 -10.41 16 3 C 0.45 14.72 6.40 71.24 0.46 15.17 16 4 O -0.53 -21.44 15.87 21.98 0.35 -21.09 16 5 C 0.14 3.89 3.36 44.60 0.15 4.04 16 6 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 7 C -0.10 -1.47 6.22 31.87 0.20 -1.27 16 8 C 0.08 1.17 3.49 32.07 0.11 1.28 16 9 H 0.14 0.76 7.90 -2.39 -0.02 0.75 16 10 O -0.40 -6.93 10.51 -148.98 -1.57 -8.49 16 11 C 0.02 0.25 10.89 113.37 1.23 1.48 16 12 C 0.07 1.36 6.43 86.86 0.56 1.92 16 13 N -0.60 -19.64 2.75 -792.20 -2.18 -21.82 16 14 C 0.53 23.63 7.24 87.66 0.64 24.26 16 15 O -0.59 -32.31 15.79 -3.04 -0.05 -32.36 16 16 C -0.11 -4.77 4.64 29.85 0.14 -4.63 16 17 C 0.04 2.66 4.26 29.85 0.13 2.79 16 18 C -0.54 -32.17 9.11 25.60 0.23 -31.94 16 19 H 0.08 4.15 7.74 -2.91 -0.02 4.13 16 20 C -0.01 -0.44 5.46 84.65 0.46 0.03 16 21 N -0.94 -61.56 13.29 21.45 0.28 -61.28 16 22 Si 0.98 45.24 29.54 68.60 2.03 47.27 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 25 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 26 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 28 H 0.04 1.10 8.13 -2.39 -0.02 1.08 16 29 H 0.11 1.30 7.84 -2.39 -0.02 1.28 16 30 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 0.52 8.13 -2.39 -0.02 0.50 16 32 H 0.07 0.42 8.11 -2.39 -0.02 0.40 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.10 1.90 7.46 -2.39 -0.02 1.88 16 35 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 37 H 0.11 4.12 7.85 -2.39 -0.02 4.10 16 38 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 39 H -0.02 -1.67 8.10 -2.38 -0.02 -1.69 16 40 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -90.85 342.37 4.84 -86.01 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.02 Total: 7.20 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 5.50 Total: 14.97 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -1.90 Total: -83.10 kcal Atomic # 8 Polarization: -70.54 SS G_CDS: -1.81 Total: -72.35 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -90.85 4.84 -86.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362783451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.322 kcal (2) G-P(sol) polarization free energy of solvation -90.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds