Wall clock time and date at job start Tue Mar 31 2020 03:12:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.45194 * 109.47160 * 2 1
4 4 C 1.34635 * 117.00259 * 179.97438 * 3 2 1
5 5 O 1.21512 * 119.99715 * 359.97438 * 4 3 2
6 6 N 1.34773 * 120.00213 * 180.02562 * 4 3 2
7 7 C 1.46504 * 119.99990 * 179.97438 * 6 4 3
8 8 C 1.50704 * 109.47138 * 179.97438 * 7 6 4
9 9 O 1.21286 * 119.99950 * 359.97438 * 8 7 6
10 10 N 1.34774 * 120.00284 * 179.97438 * 8 7 6
11 11 C 1.46957 * 120.59483 * 179.97438 * 10 8 7
12 12 C 1.53378 * 108.63600 * 235.24927 * 11 10 8
13 13 N 1.46960 * 108.63441 * 310.57541 * 12 11 10
14 14 C 1.36929 * 120.59772 * 235.19929 * 13 12 11
15 15 H 1.08001 * 120.00154 * 26.80307 * 14 13 12
16 16 C 1.38818 * 120.00276 * 206.52209 * 14 13 12
17 17 N 1.31616 * 120.00013 * 217.35632 * 16 14 13
18 18 Si 1.86795 * 119.99797 * 37.35637 * 16 14 13
19 19 H 1.48497 * 109.47307 * 95.28345 * 18 16 14
20 20 H 1.48499 * 109.46918 * 215.28171 * 18 16 14
21 21 H 1.48500 * 109.47058 * 335.28197 * 18 16 14
22 22 C 1.46972 * 118.81093 * 55.48291 * 13 12 11
23 23 C 1.46973 * 120.59110 * 0.02618 * 10 8 7
24 24 H 1.08993 * 109.47089 * 299.99703 * 1 2 3
25 25 H 1.08999 * 109.46660 * 60.00264 * 1 2 3
26 26 H 1.09000 * 109.46910 * 179.97438 * 1 2 3
27 27 H 1.09001 * 109.47349 * 239.99725 * 2 1 3
28 28 H 1.09002 * 109.47141 * 119.99921 * 2 1 3
29 29 H 0.96997 * 120.00235 * 0.02562 * 6 4 3
30 30 H 1.08997 * 109.46827 * 60.00376 * 7 6 4
31 31 H 1.08994 * 109.47336 * 299.99787 * 7 6 4
32 32 H 1.09004 * 109.60829 * 115.50719 * 11 10 8
33 33 H 1.08993 * 109.75563 * 355.08178 * 11 10 8
34 34 H 1.09001 * 109.60979 * 190.83526 * 12 11 10
35 35 H 1.08998 * 109.74677 * 70.41012 * 12 11 10
36 36 H 0.97000 * 120.00046 * 180.02562 * 17 16 14
37 37 H 1.09002 * 109.61298 * 64.25873 * 22 13 12
38 38 H 1.08995 * 109.61261 * 184.77395 * 22 13 12
39 39 H 1.08994 * 109.60538 * 244.49313 * 23 10 8
40 40 H 1.09004 * 109.60748 * 4.83428 * 23 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3488 1.5454 0.0005
5 8 4.0890 0.5817 0.0015
6 7 3.8639 2.7908 0.0011
7 6 5.3163 2.9827 0.0022
8 6 5.6281 4.4571 0.0020
9 8 4.7260 5.2678 0.0005
10 7 6.9095 4.8750 0.0035
11 6 7.2284 6.3095 0.0027
12 6 8.1452 6.6071 -1.1904
13 7 9.2484 5.6363 -1.1885
14 6 10.5503 6.0607 -1.1880
15 1 10.8047 7.0223 -0.7672
16 6 11.5440 5.2526 -1.7232
17 7 12.7306 5.2054 -1.1557
18 14 11.1972 4.2322 -3.2489
19 1 11.6520 4.9723 -4.4534
20 1 11.9252 2.9412 -3.1570
21 1 9.7386 3.9720 -3.3493
22 6 8.9295 4.2016 -1.1935
23 6 8.0128 3.9040 0.0047
24 1 -0.3633 0.5138 0.8899
25 1 -0.3632 0.5138 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 1.8934 -0.5139 -0.8900
28 1 1.8934 -0.5138 0.8900
29 1 3.2730 3.5600 0.0015
30 1 5.7444 2.5211 -0.8875
31 1 5.7431 2.5209 0.8925
32 1 7.7381 6.5714 0.9300
33 1 6.3109 6.8908 -0.0870
34 1 8.5462 7.6167 -1.1006
35 1 7.5814 6.5187 -2.1190
36 1 13.4251 4.6410 -1.5299
37 1 8.4185 3.9437 -2.1211
38 1 9.8485 3.6222 -1.1059
39 1 8.5784 3.9943 0.9320
40 1 7.6116 2.8942 -0.0823
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000492151270.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:12:18
Heat of formation + Delta-G solvation = -76.232620 kcal
Electronic energy + Delta-G solvation = -22823.402555 eV
Core-core repulsion = 19253.859167 eV
Total energy + Delta-G solvation = -3569.543388 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.73610 -39.87327 -37.41679 -36.83606 -34.73206 -34.10644 -32.03192 -31.70637
-30.84031 -28.50041 -26.80666 -23.84650 -23.35299 -23.22904 -21.58878 -20.83604
-19.59822 -18.63957 -17.22652 -16.98160 -16.85758 -16.17979 -16.03313 -15.68153
-14.95794 -14.58301 -14.52662 -14.32382 -13.92480 -13.83713 -13.39397 -13.08507
-13.04783 -12.85772 -12.50558 -12.22803 -12.11104 -11.97733 -11.90223 -11.13404
-10.88814 -10.82514 -10.77045 -10.53412 -10.48024 -10.25963 -9.78365 -9.55547
-9.48229 -8.85361 -8.34485 -7.10877 -6.16082 -3.35555 1.85068 2.54359
2.66174 3.11106 3.31808 3.44490 3.49535 4.00817 4.37672 4.46258
4.63939 4.68203 4.76046 4.98319 5.10474 5.14435 5.16909 5.28965
5.44223 5.45588 5.51122 5.62480 5.68320 5.81616 5.89556 5.95702
6.01427 6.13422 6.21490 6.43117 6.50478 6.66383 6.74918 7.21346
7.51533 7.80496 8.10009 8.15689 8.18359 8.80938 9.59857 9.98994
10.98090
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.027432 B = 0.003503 C = 0.003238
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1020.455295 B = 7991.572560 C = 8644.339680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.082 3.918
3 O -0.370 6.370
4 C 0.652 3.348
5 O -0.574 6.574
6 N -0.696 5.696
7 C 0.119 3.881
8 C 0.507 3.493
9 O -0.552 6.552
10 N -0.590 5.590
11 C 0.096 3.904
12 C 0.132 3.868
13 N -0.599 5.599
14 C -0.278 4.278
15 H 0.083 0.917
16 C 0.041 3.959
17 N -0.876 5.876
18 Si 0.834 3.166
19 H -0.292 1.292
20 H -0.293 1.293
21 H -0.258 1.258
22 C 0.131 3.869
23 C 0.080 3.920
24 H 0.067 0.933
25 H 0.067 0.933
26 H 0.082 0.918
27 H 0.071 0.929
28 H 0.071 0.929
29 H 0.418 0.582
30 H 0.103 0.897
31 H 0.103 0.897
32 H 0.071 0.929
33 H 0.087 0.913
34 H 0.076 0.924
35 H 0.027 0.973
36 H 0.264 0.736
37 H 0.034 0.966
38 H 0.080 0.920
39 H 0.079 0.921
40 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.586 -7.617 3.282 21.270
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.007 3.993
3 O -0.284 6.284
4 C 0.404 3.596
5 O -0.463 6.463
6 N -0.359 5.359
7 C -0.008 4.008
8 C 0.294 3.706
9 O -0.431 6.431
10 N -0.321 5.321
11 C -0.027 4.027
12 C 0.005 3.995
13 N -0.323 5.323
14 C -0.405 4.405
15 H 0.101 0.899
16 C -0.161 4.161
17 N -0.516 5.516
18 Si 0.661 3.339
19 H -0.219 1.219
20 H -0.219 1.219
21 H -0.183 1.183
22 C 0.004 3.996
23 C -0.044 4.044
24 H 0.086 0.914
25 H 0.086 0.914
26 H 0.100 0.900
27 H 0.089 0.911
28 H 0.089 0.911
29 H 0.256 0.744
30 H 0.121 0.879
31 H 0.121 0.879
32 H 0.089 0.911
33 H 0.105 0.895
34 H 0.095 0.905
35 H 0.045 0.955
36 H 0.074 0.926
37 H 0.052 0.948
38 H 0.099 0.901
39 H 0.098 0.902
40 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -19.517 -7.741 3.302 21.254
hybrid contribution -0.016 -0.431 -1.023 1.110
sum -19.533 -8.172 2.279 21.295
Atomic orbital electron populations
1.21835 0.92539 1.03057 1.03624 1.22971 0.94804 0.78594 1.02906
1.86240 1.21859 1.33336 1.87011 1.17910 0.81239 0.84002 0.76447
1.91014 1.59792 1.39703 1.55813 1.44251 1.07464 1.06253 1.77911
1.21086 0.79795 0.94610 1.05272 1.20259 0.83158 0.90148 0.77084
1.90661 1.45161 1.55412 1.51888 1.47959 1.04816 1.08598 1.70765
1.22272 1.00045 0.79589 1.00821 1.21354 0.89224 0.94626 0.94291
1.44307 1.02500 0.99577 1.85867 1.18755 0.80540 1.06046 1.35173
0.89923 1.25212 0.94885 0.97466 0.98568 1.70117 1.05315 1.38977
1.37147 0.87612 0.79253 0.79413 0.87613 1.21928 1.21931 1.18261
1.21795 0.97232 0.86733 0.93871 1.22724 0.88514 0.90764 1.02427
0.91422 0.91417 0.89968 0.91062 0.91071 0.74372 0.87902 0.87949
0.91110 0.89494 0.90539 0.95524 0.92623 0.94782 0.90144 0.90243
0.90459
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16
2 C 0.08 0.72 6.19 37.16 0.23 0.95 16
3 O -0.37 -4.30 10.27 -40.31 -0.41 -4.71 16
4 C 0.65 8.77 8.75 54.05 0.47 9.25 16
5 O -0.57 -9.10 16.13 -19.28 -0.31 -9.41 16
6 N -0.70 -8.79 5.53 -66.47 -0.37 -9.15 16
7 C 0.12 1.49 4.50 -5.19 -0.02 1.46 16
8 C 0.51 7.51 7.77 -10.98 -0.09 7.43 16
9 O -0.55 -9.33 15.08 5.55 0.08 -9.24 16
10 N -0.59 -9.21 2.95 -172.23 -0.51 -9.71 16
11 C 0.10 1.55 6.59 -3.60 -0.02 1.53 16
12 C 0.13 2.44 6.67 -3.60 -0.02 2.41 16
13 N -0.60 -13.21 2.71 -171.78 -0.47 -13.67 16
14 C -0.28 -7.26 9.84 -15.06 -0.15 -7.41 16
15 H 0.08 2.31 8.05 -52.49 -0.42 1.88 16
16 C 0.04 1.10 4.80 -17.43 -0.08 1.02 16
17 N -0.88 -25.28 13.97 55.49 0.78 -24.50 16
18 Si 0.83 20.19 26.46 -169.99 -4.50 15.69 16
19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
21 H -0.26 -5.91 4.99 56.52 0.28 -5.62 16
22 C 0.13 2.56 4.58 -3.38 -0.02 2.55 16
23 C 0.08 1.24 6.52 -3.38 -0.02 1.22 16
24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16
26 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16
27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
29 H 0.42 5.10 7.55 -40.82 -0.31 4.80 16
30 H 0.10 1.25 7.72 -51.93 -0.40 0.85 16
31 H 0.10 1.17 7.91 -51.93 -0.41 0.76 16
32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16
33 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16
34 H 0.08 1.37 7.93 -51.93 -0.41 0.96 16
35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16
37 H 0.03 0.68 6.78 -51.93 -0.35 0.33 16
38 H 0.08 1.70 5.59 -51.93 -0.29 1.41 16
39 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16
40 H 0.08 0.96 5.91 -51.93 -0.31 0.65 16
LS Contribution 326.69 15.07 4.92 4.92
Total: -1.00 -31.80 326.69 -6.03 -37.83
By element:
Atomic # 1 Polarization: 7.99 SS G_CDS: -5.90 Total: 2.08 kcal
Atomic # 6 Polarization: 19.23 SS G_CDS: 0.66 Total: 19.89 kcal
Atomic # 7 Polarization: -56.48 SS G_CDS: -0.57 Total: -57.04 kcal
Atomic # 8 Polarization: -22.73 SS G_CDS: -0.64 Total: -23.37 kcal
Atomic # 14 Polarization: 20.19 SS G_CDS: -4.50 Total: 15.69 kcal
Total LS contribution 4.92 Total: 4.92 kcal
Total: -31.80 -6.03 -37.83 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000492151270.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.406 kcal
(2) G-P(sol) polarization free energy of solvation -31.801 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.207 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.233 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds