Wall clock time and date at job start Tue Mar 31 2020 03:12:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.45194 * 109.47160 * 2 1
4 4 C 1.34635 * 117.00259 * 179.97438 * 3 2 1
5 5 O 1.21512 * 119.99715 * 359.97438 * 4 3 2
6 6 N 1.34773 * 120.00213 * 180.02562 * 4 3 2
7 7 C 1.46504 * 119.99990 * 179.97438 * 6 4 3
8 8 C 1.50704 * 109.47138 * 179.97438 * 7 6 4
9 9 O 1.21286 * 119.99950 * 359.97438 * 8 7 6
10 10 N 1.34774 * 120.00284 * 179.97438 * 8 7 6
11 11 C 1.46957 * 120.59483 * 179.97438 * 10 8 7
12 12 C 1.53378 * 108.63600 * 235.24927 * 11 10 8
13 13 N 1.46960 * 108.63441 * 310.57541 * 12 11 10
14 14 C 1.36929 * 120.59772 * 235.19929 * 13 12 11
15 15 H 1.08001 * 120.00154 * 26.80307 * 14 13 12
16 16 C 1.38818 * 120.00276 * 206.52209 * 14 13 12
17 17 N 1.31616 * 120.00013 * 217.35632 * 16 14 13
18 18 Si 1.86795 * 119.99797 * 37.35637 * 16 14 13
19 19 H 1.48497 * 109.47307 * 95.28345 * 18 16 14
20 20 H 1.48499 * 109.46918 * 215.28171 * 18 16 14
21 21 H 1.48500 * 109.47058 * 335.28197 * 18 16 14
22 22 C 1.46972 * 118.81093 * 55.48291 * 13 12 11
23 23 C 1.46973 * 120.59110 * 0.02618 * 10 8 7
24 24 H 1.08993 * 109.47089 * 299.99703 * 1 2 3
25 25 H 1.08999 * 109.46660 * 60.00264 * 1 2 3
26 26 H 1.09000 * 109.46910 * 179.97438 * 1 2 3
27 27 H 1.09001 * 109.47349 * 239.99725 * 2 1 3
28 28 H 1.09002 * 109.47141 * 119.99921 * 2 1 3
29 29 H 0.96997 * 120.00235 * 0.02562 * 6 4 3
30 30 H 1.08997 * 109.46827 * 60.00376 * 7 6 4
31 31 H 1.08994 * 109.47336 * 299.99787 * 7 6 4
32 32 H 1.09004 * 109.60829 * 115.50719 * 11 10 8
33 33 H 1.08993 * 109.75563 * 355.08178 * 11 10 8
34 34 H 1.09001 * 109.60979 * 190.83526 * 12 11 10
35 35 H 1.08998 * 109.74677 * 70.41012 * 12 11 10
36 36 H 0.97000 * 120.00046 * 180.02562 * 17 16 14
37 37 H 1.09002 * 109.61298 * 64.25873 * 22 13 12
38 38 H 1.08995 * 109.61261 * 184.77395 * 22 13 12
39 39 H 1.08994 * 109.60538 * 244.49313 * 23 10 8
40 40 H 1.09004 * 109.60748 * 4.83428 * 23 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3488 1.5454 0.0005
5 8 4.0890 0.5817 0.0015
6 7 3.8639 2.7908 0.0011
7 6 5.3163 2.9827 0.0022
8 6 5.6281 4.4571 0.0020
9 8 4.7260 5.2678 0.0005
10 7 6.9095 4.8750 0.0035
11 6 7.2284 6.3095 0.0027
12 6 8.1452 6.6071 -1.1904
13 7 9.2484 5.6363 -1.1885
14 6 10.5503 6.0607 -1.1880
15 1 10.8047 7.0223 -0.7672
16 6 11.5440 5.2526 -1.7232
17 7 12.7306 5.2054 -1.1557
18 14 11.1972 4.2322 -3.2489
19 1 11.6520 4.9723 -4.4534
20 1 11.9252 2.9412 -3.1570
21 1 9.7386 3.9720 -3.3493
22 6 8.9295 4.2016 -1.1935
23 6 8.0128 3.9040 0.0047
24 1 -0.3633 0.5138 0.8899
25 1 -0.3632 0.5138 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 1.8934 -0.5139 -0.8900
28 1 1.8934 -0.5138 0.8900
29 1 3.2730 3.5600 0.0015
30 1 5.7444 2.5211 -0.8875
31 1 5.7431 2.5209 0.8925
32 1 7.7381 6.5714 0.9300
33 1 6.3109 6.8908 -0.0870
34 1 8.5462 7.6167 -1.1006
35 1 7.5814 6.5187 -2.1190
36 1 13.4251 4.6410 -1.5299
37 1 8.4185 3.9437 -2.1211
38 1 9.8485 3.6222 -1.1059
39 1 8.5784 3.9943 0.9320
40 1 7.6116 2.8942 -0.0823
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000492151270.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:12:17
Heat of formation + Delta-G solvation = -99.855702 kcal
Electronic energy + Delta-G solvation = -22824.426929 eV
Core-core repulsion = 19253.859167 eV
Total energy + Delta-G solvation = -3570.567762 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.77442 -41.04922 -38.77952 -37.86310 -35.81692 -35.67950 -33.61577 -32.63533
-32.24180 -29.75158 -28.26205 -25.29481 -24.79183 -24.14587 -22.67231 -22.13990
-20.72983 -19.96336 -18.61315 -18.16867 -17.88675 -17.48163 -17.23052 -16.85831
-16.61163 -16.02712 -15.71972 -15.47717 -15.27044 -14.87003 -14.79314 -14.41076
-14.22170 -14.13887 -13.68970 -13.55685 -13.42655 -12.88808 -12.77177 -12.52194
-12.50976 -12.26457 -12.12188 -11.92330 -11.86180 -11.53832 -11.41580 -11.03602
-10.67063 -10.47315 -9.92863 -8.89422 -8.22940 -5.38481 0.92780 1.36513
1.39003 1.49369 1.54444 1.63103 1.92917 2.45321 2.93173 3.13502
3.24588 3.38626 4.04555 4.08467 4.10697 4.12846 4.18803 4.21906
4.34609 4.37509 4.42387 4.57797 4.61386 4.72344 4.78021 4.88281
4.94505 4.98029 5.02969 5.15974 5.19573 5.41462 5.42566 5.85820
6.11321 6.21842 6.31245 6.89830 6.92252 7.15683 7.62966 8.04916
8.94882
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.027432 B = 0.003503 C = 0.003238
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1020.455295 B = 7991.572560 C = 8644.339680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.072 3.928
3 O -0.373 6.373
4 C 0.652 3.348
5 O -0.600 6.600
6 N -0.693 5.693
7 C 0.122 3.878
8 C 0.513 3.487
9 O -0.571 6.571
10 N -0.594 5.594
11 C 0.106 3.894
12 C 0.131 3.869
13 N -0.613 5.613
14 C -0.264 4.264
15 H 0.052 0.948
16 C -0.010 4.010
17 N -0.925 5.925
18 Si 0.896 3.104
19 H -0.306 1.306
20 H -0.294 1.294
21 H -0.235 1.235
22 C 0.123 3.877
23 C 0.092 3.908
24 H 0.068 0.932
25 H 0.067 0.933
26 H 0.105 0.895
27 H 0.070 0.930
28 H 0.072 0.928
29 H 0.420 0.580
30 H 0.113 0.887
31 H 0.120 0.880
32 H 0.070 0.930
33 H 0.096 0.904
34 H 0.075 0.925
35 H 0.031 0.969
36 H 0.263 0.737
37 H 0.039 0.961
38 H 0.063 0.937
39 H 0.078 0.922
40 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.046 -8.987 3.172 24.017
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.002 4.002
3 O -0.287 6.287
4 C 0.405 3.595
5 O -0.491 6.491
6 N -0.355 5.355
7 C -0.004 4.004
8 C 0.302 3.698
9 O -0.451 6.451
10 N -0.326 5.326
11 C -0.018 4.018
12 C 0.005 3.995
13 N -0.337 5.337
14 C -0.393 4.393
15 H 0.070 0.930
16 C -0.208 4.208
17 N -0.568 5.568
18 Si 0.723 3.277
19 H -0.235 1.235
20 H -0.221 1.221
21 H -0.159 1.159
22 C -0.003 4.003
23 C -0.032 4.032
24 H 0.087 0.913
25 H 0.086 0.914
26 H 0.123 0.877
27 H 0.089 0.911
28 H 0.090 0.910
29 H 0.259 0.741
30 H 0.131 0.869
31 H 0.137 0.863
32 H 0.089 0.911
33 H 0.114 0.886
34 H 0.093 0.907
35 H 0.049 0.951
36 H 0.072 0.928
37 H 0.057 0.943
38 H 0.082 0.918
39 H 0.096 0.904
40 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -22.051 -9.118 3.188 24.074
hybrid contribution 0.658 0.059 -0.945 1.153
sum -21.392 -9.059 2.244 23.340
Atomic orbital electron populations
1.21858 0.90220 1.04588 1.03700 1.23296 0.96589 0.77349 1.02941
1.86267 1.20737 1.35055 1.86614 1.17990 0.81672 0.83767 0.76034
1.90994 1.60517 1.40485 1.57150 1.44239 1.07578 1.06155 1.77561
1.21121 0.80004 0.92746 1.06545 1.20539 0.82378 0.90957 0.75945
1.90661 1.45614 1.56306 1.52568 1.47967 1.05240 1.08236 1.71113
1.22065 0.99733 0.80471 0.99490 1.21450 0.88556 0.93934 0.95553
1.44426 1.01780 1.01356 1.86143 1.18688 0.82536 1.04628 1.33461
0.93009 1.25682 0.94821 0.99580 1.00704 1.70195 1.06558 1.41327
1.38711 0.86637 0.80194 0.77614 0.83236 1.23459 1.22110 1.15894
1.21862 0.97532 0.84967 0.95942 1.22564 0.87914 0.92540 1.00170
0.91263 0.91373 0.87686 0.91149 0.91000 0.74114 0.86891 0.86269
0.91122 0.88554 0.90706 0.95117 0.92800 0.94322 0.91829 0.90359
0.86657
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.38 10.29 71.98 0.74 -0.64 16
2 C 0.07 1.14 6.19 71.98 0.45 1.58 16
3 O -0.37 -7.99 10.27 -55.44 -0.57 -8.56 16
4 C 0.65 16.24 8.75 129.79 1.14 17.37 16
5 O -0.60 -17.83 16.13 19.80 0.32 -17.51 16
6 N -0.69 -15.77 5.53 -594.62 -3.29 -19.06 16
7 C 0.12 2.65 4.50 85.63 0.38 3.04 16
8 C 0.51 13.69 7.77 87.66 0.68 14.38 16
9 O -0.57 -17.85 15.08 -3.05 -0.05 -17.90 16
10 N -0.59 -16.89 2.95 -817.21 -2.41 -19.30 16
11 C 0.11 3.22 6.59 86.42 0.57 3.79 16
12 C 0.13 4.67 6.67 86.42 0.58 5.25 16
13 N -0.61 -26.42 2.71 -697.41 -1.89 -28.31 16
14 C -0.26 -13.94 9.84 84.04 0.83 -13.12 16
15 H 0.05 2.99 8.05 -2.91 -0.02 2.97 16
16 C -0.01 -0.53 4.80 84.86 0.41 -0.12 16
17 N -0.93 -54.68 13.97 21.65 0.30 -54.37 16
18 Si 0.90 42.02 26.46 68.60 1.82 43.84 16
19 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16
20 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16
21 H -0.24 -10.03 4.99 99.48 0.50 -9.54 16
22 C 0.12 4.57 4.58 86.55 0.40 4.97 16
23 C 0.09 2.58 6.52 86.55 0.56 3.14 16
24 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16
25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16
26 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16
27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
29 H 0.42 9.33 7.55 -92.71 -0.70 8.63 16
30 H 0.11 2.32 7.72 -2.39 -0.02 2.30 16
31 H 0.12 2.27 7.91 -2.39 -0.02 2.25 16
32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16
33 H 0.10 2.78 7.00 -2.39 -0.02 2.77 16
34 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16
35 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16
36 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16
37 H 0.04 1.42 6.78 -2.39 -0.02 1.40 16
38 H 0.06 2.59 5.59 -2.39 -0.01 2.58 16
39 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
40 H 0.12 2.38 5.91 -2.39 -0.01 2.36 16
Total: -1.00 -68.19 326.69 1.11 -67.09
By element:
Atomic # 1 Polarization: 14.30 SS G_CDS: 0.14 Total: 14.44 kcal
Atomic # 6 Polarization: 32.92 SS G_CDS: 6.73 Total: 39.65 kcal
Atomic # 7 Polarization: -113.76 SS G_CDS: -7.28 Total: -121.04 kcal
Atomic # 8 Polarization: -43.67 SS G_CDS: -0.30 Total: -43.97 kcal
Atomic # 14 Polarization: 42.02 SS G_CDS: 1.82 Total: 43.84 kcal
Total: -68.19 1.11 -67.09 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000492151270.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.770 kcal
(2) G-P(sol) polarization free energy of solvation -68.194 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.964 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.086 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.856 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds