Wall clock time and date at job start Tue Mar 31 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00385 * 2 1 4 4 C 1.52995 * 109.47377 * 180.02562 * 3 2 1 5 5 C 1.52998 * 115.55507 * 65.46580 * 4 3 2 6 6 C 1.50698 * 109.46687 * 64.98648 * 5 4 3 7 7 O 1.21295 * 120.00658 * 5.58239 * 6 5 4 8 8 N 1.34781 * 119.99935 * 185.57999 * 6 5 4 9 9 C 1.37095 * 119.99819 * 355.23022 * 8 6 5 10 10 H 1.08004 * 120.00114 * 21.43849 * 9 8 6 11 11 C 1.38952 * 120.00063 * 201.43197 * 9 8 6 12 12 N 1.31415 * 119.99708 * 3.84780 * 11 9 8 13 13 Si 1.86798 * 120.00402 * 183.84244 * 11 9 8 14 14 H 1.48495 * 109.46952 * 90.00018 * 13 11 9 15 15 H 1.48497 * 109.47607 * 210.00389 * 13 11 9 16 16 H 1.48508 * 109.46803 * 330.00459 * 13 11 9 17 17 C 1.46498 * 119.99981 * 175.22675 * 8 6 5 18 18 C 1.50707 * 109.46971 * 90.00561 * 17 8 6 19 19 O 1.20825 * 119.99823 * 359.97438 * 18 17 8 20 20 O 1.34232 * 120.00092 * 180.02562 * 18 17 8 21 21 C 1.45197 * 116.99998 * 179.97438 * 20 18 17 22 22 C 1.53004 * 117.49623 * 279.79837 * 4 3 2 23 23 C 1.53004 * 117.49890 * 211.14175 * 4 3 2 24 24 H 1.09006 * 109.47158 * 60.00221 * 1 2 3 25 25 H 1.09000 * 109.47321 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47121 * 300.00094 * 1 2 3 27 27 H 1.09004 * 109.46926 * 300.00229 * 3 2 1 28 28 H 1.08997 * 109.47231 * 59.99701 * 3 2 1 29 29 H 1.08997 * 109.47496 * 184.98707 * 5 4 3 30 30 H 1.08998 * 109.46900 * 304.99067 * 5 4 3 31 31 H 0.97001 * 119.99802 * 185.00021 * 12 11 9 32 32 H 1.08998 * 109.47237 * 209.99751 * 17 8 6 33 33 H 1.08994 * 109.47695 * 330.00667 * 17 8 6 34 34 H 1.09007 * 109.47012 * 299.99807 * 21 20 18 35 35 H 1.09000 * 109.47205 * 59.99736 * 21 20 18 36 36 H 1.08995 * 109.47297 * 179.97438 * 21 20 18 37 37 H 1.09005 * 117.49771 * 0.02562 * 22 4 3 38 38 H 1.09004 * 117.49817 * 145.01943 * 22 4 3 39 39 H 1.08999 * 117.49782 * 214.97449 * 23 4 3 40 40 H 1.09008 * 117.49822 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1476 0.5613 -1.2567 6 6 3.8919 1.4600 -2.4390 7 8 3.3704 2.5430 -2.2762 8 7 4.2428 1.0605 -3.6775 9 6 4.9199 -0.1188 -3.8512 10 1 4.8759 -0.8839 -3.0902 11 6 5.6627 -0.3299 -5.0064 12 7 5.7782 0.6289 -5.8976 13 14 6.4972 -1.9764 -5.2925 14 1 5.5712 -2.8808 -6.0204 15 1 7.7276 -1.7743 -6.0990 16 1 6.8561 -2.5832 -3.9854 17 6 3.9007 1.8865 -4.8380 18 6 5.0187 2.8602 -5.1088 19 8 6.0003 2.8640 -4.4042 20 8 4.9235 3.7239 -6.1319 21 6 6.0377 4.6329 -6.3330 22 6 4.2219 0.8983 1.3364 23 6 4.3317 2.2866 0.7011 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 1.6886 1.8463 0.8899 29 1 5.2219 0.4420 -1.1166 30 1 3.6942 -0.4135 -1.4365 31 1 6.2349 0.4590 -6.7363 32 1 3.7567 1.2474 -5.7091 33 1 2.9816 2.4361 -4.6347 34 1 6.1706 5.2473 -5.4425 35 1 6.9460 4.0592 -6.5175 36 1 5.8332 5.2743 -7.1902 37 1 3.5869 0.7956 2.2164 38 1 5.1099 0.2662 1.3211 39 1 5.2918 2.5673 0.2681 40 1 3.7689 3.0979 1.1629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582488044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:30 Heat of formation + Delta-G solvation = -125.406118 kcal Electronic energy + Delta-G solvation = -23965.718603 eV Core-core repulsion = 20361.750140 eV Total energy + Delta-G solvation = -3603.968462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.49052 -38.79830 -37.61671 -36.25762 -35.22349 -34.42500 -31.50074 -29.58894 -28.07968 -27.35617 -26.01144 -25.18031 -24.39662 -22.02181 -20.50146 -19.39828 -18.73749 -16.94688 -16.47453 -16.15935 -15.88129 -15.50327 -15.49720 -15.24168 -15.05683 -14.33453 -14.14303 -13.84782 -13.76249 -13.01442 -12.74792 -12.39444 -12.34310 -11.96783 -11.45494 -11.37035 -11.33696 -11.26476 -11.15515 -11.12624 -10.75137 -10.66622 -10.44482 -10.33903 -9.90699 -9.71282 -9.50058 -9.48676 -9.26206 -8.94528 -8.41265 -7.88709 -6.42337 -4.02335 3.11126 3.19583 3.22850 3.59914 3.81715 3.86438 4.07213 4.16402 4.38752 4.77260 5.07499 5.12077 5.24562 5.40308 5.43353 5.47537 5.60092 5.76595 5.77823 5.81466 5.84536 5.97274 6.03361 6.11527 6.23090 6.27732 6.31071 6.43277 6.49748 6.52565 6.63741 6.67556 6.83807 7.35743 7.46374 7.58920 7.71178 8.29007 9.01952 9.28322 9.42251 9.81801 10.63175 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.006209 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.328136 B = 4508.240199 C = 5412.336045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.100 3.900 4 C -0.095 4.095 5 C -0.080 4.080 6 C 0.478 3.522 7 O -0.597 6.597 8 N -0.437 5.437 9 C -0.323 4.323 10 H 0.103 0.897 11 C 0.036 3.964 12 N -0.885 5.885 13 Si 0.934 3.066 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.163 3.837 18 C 0.494 3.506 19 O -0.508 6.508 20 O -0.378 6.378 21 C 0.045 3.955 22 C -0.176 4.176 23 C -0.154 4.154 24 H 0.040 0.960 25 H 0.081 0.919 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.272 0.728 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 0.471 5.270 7.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C 0.024 3.976 4 C -0.095 4.095 5 C -0.120 4.120 6 C 0.268 3.732 7 O -0.483 6.483 8 N -0.156 5.156 9 C -0.451 4.451 10 H 0.121 0.879 11 C -0.166 4.166 12 N -0.526 5.526 13 Si 0.761 3.239 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.194 1.194 17 C 0.038 3.962 18 C 0.336 3.664 19 O -0.393 6.393 20 O -0.295 6.295 21 C -0.049 4.049 22 C -0.213 4.213 23 C -0.191 4.191 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.763 0.880 5.387 7.244 hybrid contribution 0.696 -0.506 -0.446 0.970 sum -4.066 0.374 4.941 6.410 Atomic orbital electron populations 1.22665 0.81843 1.02189 0.99615 1.87865 1.18864 1.28603 1.95382 1.22039 0.91045 0.83909 1.00590 1.20928 0.92204 1.03448 0.92946 1.20877 1.01346 0.99053 0.90725 1.20201 0.82107 0.86960 0.83964 1.90503 1.49318 1.23235 1.85223 1.43374 1.49936 1.19127 1.03148 1.19704 1.25700 0.92886 1.06763 0.87946 1.25245 0.95887 0.98978 0.96516 1.69475 1.43178 1.31246 1.08677 0.85803 0.78654 0.80813 0.78652 1.20316 1.20968 1.19377 1.20432 0.91880 0.91687 0.92225 1.23769 0.89197 0.77262 0.76190 1.90482 1.32100 1.67978 1.48761 1.86451 1.44822 1.46613 1.51663 1.22875 0.89446 0.92021 1.00592 1.23050 1.02716 0.99501 0.95997 1.22878 1.01805 0.91642 1.02767 0.94182 0.90021 0.94720 0.91041 0.94230 0.89607 0.89129 0.91688 0.86000 0.90760 0.93371 0.92820 0.89844 0.89167 0.88834 0.88533 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.39 -6.49 10.63 -35.23 -0.37 -6.86 16 3 C 0.10 1.71 5.55 37.15 0.21 1.92 16 4 C -0.09 -1.69 1.27 -154.51 -0.20 -1.88 16 5 C -0.08 -1.64 4.06 -27.89 -0.11 -1.75 16 6 C 0.48 11.53 7.39 -10.98 -0.08 11.45 16 7 O -0.60 -15.22 14.18 5.54 0.08 -15.14 16 8 N -0.44 -11.03 2.11 -116.09 -0.25 -11.28 16 9 C -0.32 -8.13 9.19 -14.93 -0.14 -8.27 16 10 H 0.10 2.42 6.45 -52.48 -0.34 2.08 16 11 C 0.04 0.91 5.26 -17.47 -0.09 0.82 16 12 N -0.89 -23.10 8.07 55.50 0.45 -22.65 16 13 Si 0.93 19.75 29.56 -169.99 -5.02 14.72 16 14 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 17 C 0.16 4.00 5.21 -5.19 -0.03 3.97 16 18 C 0.49 12.59 5.77 36.01 0.21 12.80 16 19 O -0.51 -14.46 15.61 -18.75 -0.29 -14.75 16 20 O -0.38 -8.45 10.57 -39.26 -0.41 -8.87 16 21 C 0.05 0.82 10.56 101.05 1.07 1.89 16 22 C -0.18 -2.60 9.94 -26.69 -0.27 -2.86 16 23 C -0.15 -2.52 9.85 -26.69 -0.26 -2.78 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 1.37 6.59 -51.93 -0.34 1.03 16 28 H 0.04 0.59 8.09 -51.93 -0.42 0.17 16 29 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 30 H 0.09 1.81 7.53 -51.93 -0.39 1.42 16 31 H 0.27 6.84 8.32 -40.82 -0.34 6.50 16 32 H 0.12 2.97 6.58 -51.93 -0.34 2.63 16 33 H 0.07 1.71 7.49 -51.93 -0.39 1.32 16 34 H 0.05 0.86 8.13 -51.92 -0.42 0.44 16 35 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.09 1.34 8.14 -51.92 -0.42 0.91 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -31.27 337.67 -5.32 -36.60 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.01 Total: 6.31 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 1.42 Total: 16.84 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.20 Total: -33.93 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -1.00 Total: -45.62 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.27 -5.32 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582488044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.810 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds