Wall clock time and date at job start Tue Mar 31 2020 02:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00385 * 2 1 4 4 C 1.52995 * 109.47377 * 180.02562 * 3 2 1 5 5 C 1.52998 * 115.55507 * 65.46580 * 4 3 2 6 6 C 1.50698 * 109.46687 * 64.98648 * 5 4 3 7 7 O 1.21295 * 120.00658 * 5.58239 * 6 5 4 8 8 N 1.34781 * 119.99935 * 185.57999 * 6 5 4 9 9 C 1.37095 * 119.99819 * 355.23022 * 8 6 5 10 10 H 1.08004 * 120.00114 * 21.43849 * 9 8 6 11 11 C 1.38952 * 120.00063 * 201.43197 * 9 8 6 12 12 N 1.31415 * 119.99708 * 3.84780 * 11 9 8 13 13 Si 1.86798 * 120.00402 * 183.84244 * 11 9 8 14 14 H 1.48495 * 109.46952 * 90.00018 * 13 11 9 15 15 H 1.48497 * 109.47607 * 210.00389 * 13 11 9 16 16 H 1.48508 * 109.46803 * 330.00459 * 13 11 9 17 17 C 1.46498 * 119.99981 * 175.22675 * 8 6 5 18 18 C 1.50707 * 109.46971 * 90.00561 * 17 8 6 19 19 O 1.20825 * 119.99823 * 359.97438 * 18 17 8 20 20 O 1.34232 * 120.00092 * 180.02562 * 18 17 8 21 21 C 1.45197 * 116.99998 * 179.97438 * 20 18 17 22 22 C 1.53004 * 117.49623 * 279.79837 * 4 3 2 23 23 C 1.53004 * 117.49890 * 211.14175 * 4 3 2 24 24 H 1.09006 * 109.47158 * 60.00221 * 1 2 3 25 25 H 1.09000 * 109.47321 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47121 * 300.00094 * 1 2 3 27 27 H 1.09004 * 109.46926 * 300.00229 * 3 2 1 28 28 H 1.08997 * 109.47231 * 59.99701 * 3 2 1 29 29 H 1.08997 * 109.47496 * 184.98707 * 5 4 3 30 30 H 1.08998 * 109.46900 * 304.99067 * 5 4 3 31 31 H 0.97001 * 119.99802 * 185.00021 * 12 11 9 32 32 H 1.08998 * 109.47237 * 209.99751 * 17 8 6 33 33 H 1.08994 * 109.47695 * 330.00667 * 17 8 6 34 34 H 1.09007 * 109.47012 * 299.99807 * 21 20 18 35 35 H 1.09000 * 109.47205 * 59.99736 * 21 20 18 36 36 H 1.08995 * 109.47297 * 179.97438 * 21 20 18 37 37 H 1.09005 * 117.49771 * 0.02562 * 22 4 3 38 38 H 1.09004 * 117.49817 * 145.01943 * 22 4 3 39 39 H 1.08999 * 117.49782 * 214.97449 * 23 4 3 40 40 H 1.09008 * 117.49822 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1476 0.5613 -1.2567 6 6 3.8919 1.4600 -2.4390 7 8 3.3704 2.5430 -2.2762 8 7 4.2428 1.0605 -3.6775 9 6 4.9199 -0.1188 -3.8512 10 1 4.8759 -0.8839 -3.0902 11 6 5.6627 -0.3299 -5.0064 12 7 5.7782 0.6289 -5.8976 13 14 6.4972 -1.9764 -5.2925 14 1 5.5712 -2.8808 -6.0204 15 1 7.7276 -1.7743 -6.0990 16 1 6.8561 -2.5832 -3.9854 17 6 3.9007 1.8865 -4.8380 18 6 5.0187 2.8602 -5.1088 19 8 6.0003 2.8640 -4.4042 20 8 4.9235 3.7239 -6.1319 21 6 6.0377 4.6329 -6.3330 22 6 4.2219 0.8983 1.3364 23 6 4.3317 2.2866 0.7011 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 1.6886 1.8463 0.8899 29 1 5.2219 0.4420 -1.1166 30 1 3.6942 -0.4135 -1.4365 31 1 6.2349 0.4590 -6.7363 32 1 3.7567 1.2474 -5.7091 33 1 2.9816 2.4361 -4.6347 34 1 6.1706 5.2473 -5.4425 35 1 6.9460 4.0592 -6.5175 36 1 5.8332 5.2743 -7.1902 37 1 3.5869 0.7956 2.2164 38 1 5.1099 0.2662 1.3211 39 1 5.2918 2.5673 0.2681 40 1 3.7689 3.0979 1.1629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582488044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:29 Heat of formation + Delta-G solvation = -144.193778 kcal Electronic energy + Delta-G solvation = -23966.533297 eV Core-core repulsion = 20361.750140 eV Total energy + Delta-G solvation = -3604.783156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33871 -40.47536 -39.14953 -37.58822 -37.06668 -36.38041 -33.43632 -31.32330 -29.57422 -28.71218 -27.70824 -26.49085 -26.13725 -23.25378 -22.31603 -21.23460 -20.29405 -18.69718 -18.40022 -17.99286 -17.26867 -17.15783 -16.91627 -16.75149 -16.67232 -16.06536 -15.82720 -15.41556 -15.17590 -14.52895 -14.37606 -14.14564 -14.02963 -13.30292 -13.14572 -13.05024 -12.94447 -12.82928 -12.60692 -12.51397 -12.41294 -12.29822 -12.09793 -11.85107 -11.52864 -11.41553 -11.19714 -10.92802 -10.86145 -10.57982 -10.18696 -9.83253 -8.32950 -5.98724 1.43535 1.46837 1.58263 1.77005 1.92485 2.24186 2.37764 2.59705 2.94702 3.15784 3.25955 3.82398 3.87738 4.08910 4.15362 4.28962 4.36630 4.41628 4.44023 4.45391 4.55549 4.61168 4.64842 4.72705 4.77093 4.80023 4.84884 4.85713 4.96323 5.01281 5.10618 5.21197 5.29619 5.43771 5.70956 5.80893 6.29776 6.35704 7.08845 7.33341 7.51905 7.91419 8.72215 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.006209 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.328136 B = 4508.240199 C = 5412.336045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.109 3.891 4 C -0.123 4.123 5 C -0.070 4.070 6 C 0.468 3.532 7 O -0.617 6.617 8 N -0.450 5.450 9 C -0.339 4.339 10 H 0.113 0.887 11 C -0.008 4.008 12 N -0.909 5.909 13 Si 1.000 3.000 14 H -0.266 1.266 15 H -0.292 1.292 16 H -0.260 1.260 17 C 0.162 3.838 18 C 0.496 3.504 19 O -0.546 6.546 20 O -0.380 6.380 21 C 0.040 3.960 22 C -0.144 4.144 23 C -0.160 4.160 24 H 0.035 0.965 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.270 0.730 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 -0.366 6.267 8.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C 0.032 3.968 4 C -0.124 4.124 5 C -0.110 4.110 6 C 0.259 3.741 7 O -0.503 6.503 8 N -0.169 5.169 9 C -0.466 4.466 10 H 0.131 0.869 11 C -0.207 4.207 12 N -0.550 5.550 13 Si 0.824 3.176 14 H -0.191 1.191 15 H -0.219 1.219 16 H -0.184 1.184 17 C 0.036 3.964 18 C 0.340 3.660 19 O -0.434 6.434 20 O -0.297 6.297 21 C -0.053 4.053 22 C -0.180 4.180 23 C -0.197 4.197 24 H 0.053 0.947 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.137 0.863 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.151 0.849 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.038 0.050 6.378 8.128 hybrid contribution 0.739 -0.149 -0.808 1.105 sum -4.299 -0.099 5.570 7.037 Atomic orbital electron populations 1.22900 0.79900 1.03775 1.00393 1.87827 1.21051 1.28341 1.95492 1.21866 0.90621 0.84136 1.00142 1.20985 0.92907 1.05236 0.93276 1.20792 1.01266 0.98424 0.90522 1.20920 0.81326 0.87288 0.84595 1.90470 1.50018 1.24244 1.85615 1.43624 1.50178 1.19469 1.03677 1.20064 1.26024 0.93179 1.07377 0.86906 1.26126 0.96204 1.02228 0.96144 1.69573 1.43746 1.32787 1.08876 0.84798 0.77192 0.76944 0.78666 1.19123 1.21856 1.18431 1.20452 0.92038 0.91670 0.92261 1.23887 0.88697 0.77317 0.76128 1.90447 1.33493 1.69272 1.50207 1.86416 1.46386 1.46619 1.50245 1.23231 0.87927 0.91496 1.02678 1.23133 1.02441 0.97731 0.94722 1.22901 1.00925 0.92870 1.03024 0.94676 0.88096 0.92647 0.94144 0.91934 0.89940 0.89073 0.91938 0.86330 0.90145 0.93299 0.93914 0.84942 0.86730 0.87957 0.90285 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.41 -13.05 10.63 -148.98 -1.58 -14.64 16 3 C 0.11 3.60 5.55 71.98 0.40 4.00 16 4 C -0.12 -4.28 1.27 -52.18 -0.07 -4.35 16 5 C -0.07 -2.88 4.06 29.85 0.12 -2.76 16 6 C 0.47 23.02 7.39 87.66 0.65 23.67 16 7 O -0.62 -32.20 14.18 -3.08 -0.04 -32.24 16 8 N -0.45 -23.21 2.11 -639.59 -1.35 -24.56 16 9 C -0.34 -17.22 9.19 84.04 0.77 -16.44 16 10 H 0.11 5.32 6.45 -2.91 -0.02 5.30 16 11 C -0.01 -0.38 5.26 84.93 0.45 0.07 16 12 N -0.91 -47.98 8.07 21.66 0.17 -47.81 16 13 Si 1.00 40.18 29.56 68.60 2.03 42.21 16 14 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 15 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 17 C 0.16 8.11 5.21 85.64 0.45 8.55 16 18 C 0.50 25.78 5.77 71.24 0.41 26.19 16 19 O -0.55 -31.79 15.61 21.97 0.34 -31.44 16 20 O -0.38 -17.00 10.57 -51.44 -0.54 -17.54 16 21 C 0.04 1.43 10.56 113.37 1.20 2.63 16 22 C -0.14 -3.87 9.94 30.62 0.30 -3.57 16 23 C -0.16 -5.06 9.85 30.62 0.30 -4.76 16 24 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 1.57 6.59 -2.38 -0.02 1.56 16 28 H 0.06 1.75 8.09 -2.39 -0.02 1.73 16 29 H 0.08 3.37 8.09 -2.39 -0.02 3.35 16 30 H 0.09 3.65 7.53 -2.39 -0.02 3.63 16 31 H 0.27 13.74 8.32 -92.71 -0.77 12.96 16 32 H 0.12 5.95 6.58 -2.39 -0.02 5.93 16 33 H 0.08 3.83 7.49 -2.39 -0.02 3.81 16 34 H 0.05 1.72 8.13 -2.38 -0.02 1.70 16 35 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 36 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 38 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 Total: -1.00 -67.86 337.67 6.28 -61.57 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 1.03 Total: 29.35 kcal Atomic # 6 Polarization: 28.87 SS G_CDS: 6.23 Total: 35.10 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -1.18 Total: -72.37 kcal Atomic # 8 Polarization: -94.03 SS G_CDS: -1.83 Total: -95.86 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -67.86 6.28 -61.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582488044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.619 kcal (2) G-P(sol) polarization free energy of solvation -67.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds