Wall clock time and date at job start Tue Mar 31 2020 03:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00528 * 2 1 4 4 O 1.21532 * 119.99784 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00050 * 179.97438 * 3 2 1 6 6 C 1.34775 * 120.00041 * 179.72401 * 5 3 2 7 7 O 1.21241 * 119.99751 * 359.97438 * 6 5 3 8 8 C 1.50698 * 120.00301 * 179.97438 * 6 5 3 9 9 H 1.08999 * 109.46843 * 60.00367 * 8 6 5 10 10 C 1.52994 * 109.47173 * 300.00253 * 8 6 5 11 11 N 1.46903 * 109.47429 * 179.97438 * 8 6 5 12 12 C 1.47436 * 111.00387 * 175.27481 * 11 8 6 13 13 C 1.54316 * 107.23132 * 123.25758 * 12 11 8 14 14 C 1.55137 * 103.02286 * 22.28901 * 13 12 11 15 15 O 1.42898 * 110.99162 * 82.43403 * 14 13 12 16 16 C 1.50703 * 110.99448 * 206.21746 * 14 13 12 17 17 H 1.07994 * 119.99959 * 27.82084 * 16 14 13 18 18 C 1.37873 * 119.99664 * 207.82184 * 16 14 13 19 19 N 1.31520 * 119.99616 * 171.70950 * 18 16 14 20 20 Si 1.86800 * 120.00420 * 351.71801 * 18 16 14 21 21 H 1.48496 * 109.47386 * 84.91445 * 20 18 16 22 22 H 1.48501 * 109.47072 * 204.91760 * 20 18 16 23 23 H 1.48501 * 109.46943 * 324.91358 * 20 18 16 24 24 C 1.47843 * 110.99932 * 296.12259 * 11 8 6 25 25 H 1.08994 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47174 * 300.00183 * 1 2 3 27 27 H 1.08999 * 109.46641 * 59.99671 * 1 2 3 28 28 H 0.97009 * 119.99820 * 179.97438 * 2 1 3 29 29 H 0.96997 * 120.00267 * 0.02562 * 5 3 2 30 30 H 1.08998 * 109.46980 * 53.74504 * 10 8 6 31 31 H 1.09010 * 109.47183 * 173.74393 * 10 8 6 32 32 H 1.09006 * 109.47398 * 293.74180 * 10 8 6 33 33 H 1.08992 * 109.89589 * 242.67031 * 12 11 8 34 34 H 1.09004 * 109.88874 * 3.69709 * 12 11 8 35 35 H 1.09001 * 110.70509 * 140.67151 * 13 12 11 36 36 H 1.09001 * 110.71275 * 263.73025 * 13 12 11 37 37 H 0.96691 * 114.00133 * 64.67369 * 15 14 13 38 38 H 0.96998 * 119.99740 * 180.02562 * 19 18 16 39 39 H 1.08994 * 110.37445 * 332.46443 * 24 11 8 40 40 H 1.09001 * 110.37131 * 94.80663 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5314 2.2197 0.0005 5 7 3.4867 1.1670 0.0005 6 6 4.1607 2.3341 -0.0051 7 8 3.5545 3.3841 -0.0111 8 6 5.6677 2.3341 -0.0039 9 1 6.0316 1.8156 -0.8910 10 6 6.1767 1.6194 1.2494 11 7 6.1575 3.7190 -0.0115 12 6 7.6268 3.7605 0.1028 13 6 8.1585 4.5401 -1.1183 14 6 6.9322 5.3839 -1.5553 15 8 6.8244 6.5741 -0.7718 16 6 6.9987 5.7123 -3.0246 17 1 7.5176 5.0511 -3.7027 18 6 6.3971 6.8569 -3.5030 19 7 6.5907 7.2297 -4.7493 20 14 5.3072 7.8781 -2.3811 21 1 6.1474 8.8170 -1.5952 22 1 4.3375 8.6487 -3.2004 23 1 4.5701 6.9804 -1.4559 24 6 5.7621 4.4140 -1.2550 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.9500 -0.8401 0.0004 29 1 3.9717 0.3270 0.0005 30 1 5.7247 0.6295 1.3119 31 1 7.2610 1.5210 1.1965 32 1 5.9070 2.1984 2.1327 33 1 7.9131 4.2712 1.0222 34 1 8.0276 2.7469 0.1018 35 1 8.9883 5.1860 -0.8316 36 1 8.4607 3.8555 -1.9108 37 1 7.5594 7.1911 -0.8907 38 1 6.1677 8.0352 -5.0858 39 1 5.6441 3.6984 -2.0686 40 1 4.8378 4.9708 -1.1011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:16 Heat of formation + Delta-G solvation = -87.239116 kcal Electronic energy + Delta-G solvation = -23817.551803 eV Core-core repulsion = 20247.531137 eV Total energy + Delta-G solvation = -3570.020666 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.17231 -39.24218 -37.85312 -35.47253 -34.75516 -34.43832 -32.26557 -32.03295 -28.79850 -28.17613 -27.23472 -24.59904 -24.29102 -21.98934 -20.59394 -20.01169 -19.53444 -19.02381 -17.52745 -17.04323 -16.11640 -15.74328 -15.50275 -15.10167 -14.97949 -14.63046 -14.47458 -14.11845 -13.73111 -13.41091 -12.92023 -12.65339 -12.59156 -12.53183 -12.29946 -11.99090 -11.78283 -11.68663 -11.31501 -11.06580 -10.79718 -10.51755 -10.38782 -10.11913 -10.03722 -9.96831 -9.38328 -9.38149 -9.14376 -8.47230 -8.31725 -7.75749 -6.11495 -4.21848 2.23524 2.27602 3.30622 3.57513 3.68476 3.76694 3.91402 4.34647 4.59421 4.63045 4.88104 4.93715 5.13428 5.16559 5.27494 5.32651 5.36054 5.47367 5.52826 5.55576 5.80652 5.93545 6.03768 6.05734 6.09246 6.21388 6.37216 6.44795 6.55927 6.73452 6.94552 7.23980 7.34388 7.40196 7.56690 7.67278 8.19864 8.21757 8.33212 8.77589 8.92018 9.51924 10.97354 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.005188 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.146861 B = 5395.650470 C = 6291.052459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.746 5.746 3 C 0.691 3.309 4 O -0.527 6.527 5 N -0.694 5.694 6 C 0.515 3.485 7 O -0.434 6.434 8 C 0.062 3.938 9 H 0.070 0.930 10 C -0.144 4.144 11 N -0.510 5.510 12 C 0.048 3.952 13 C -0.159 4.159 14 C 0.222 3.778 15 O -0.551 6.551 16 C -0.555 4.555 17 H 0.077 0.923 18 C 0.072 3.928 19 N -0.890 5.890 20 Si 0.946 3.054 21 H -0.293 1.293 22 H -0.328 1.328 23 H -0.265 1.265 24 C 0.058 3.942 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.398 0.602 29 H 0.405 0.595 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.368 0.632 38 H 0.266 0.734 39 H 0.049 0.951 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 -19.618 11.288 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.404 5.404 3 C 0.390 3.610 4 O -0.398 6.398 5 N -0.361 5.361 6 C 0.299 3.701 7 O -0.297 6.297 8 C -0.051 4.051 9 H 0.087 0.913 10 C -0.201 4.201 11 N -0.236 5.236 12 C -0.079 4.079 13 C -0.198 4.198 14 C 0.181 3.819 15 O -0.358 6.358 16 C -0.593 4.593 17 H 0.095 0.905 18 C -0.132 4.132 19 N -0.525 5.525 20 Si 0.782 3.218 21 H -0.221 1.221 22 H -0.260 1.260 23 H -0.190 1.190 24 C -0.069 4.069 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.231 0.769 29 H 0.240 0.760 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.215 0.785 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.730 -17.847 11.764 21.893 hybrid contribution 0.805 -0.720 -0.555 1.214 sum -3.925 -18.568 11.209 22.041 Atomic orbital electron populations 1.21452 0.77704 1.02139 1.02714 1.45049 1.08060 1.06879 1.80412 1.16205 0.81483 0.84824 0.78455 1.91097 1.66973 1.29719 1.52009 1.44255 1.06601 1.11643 1.73615 1.20910 0.90254 0.82626 0.76283 1.90874 1.69383 1.29991 1.39484 1.21759 0.90030 0.93597 0.99680 0.91283 1.21907 1.02074 0.99033 0.97135 1.63579 1.10749 1.09692 1.39569 1.22810 0.86815 0.98783 0.99522 1.23375 1.00066 0.99806 0.96520 1.20173 0.89549 0.82070 0.90082 1.86189 1.48719 1.31971 1.68921 1.21227 1.37657 1.09498 0.90900 0.90469 1.25159 0.95213 0.97310 0.95549 1.69974 1.42358 1.24327 1.15884 0.85706 0.79363 0.78795 0.77937 1.22133 1.25966 1.19024 1.23449 1.00972 0.95558 0.86895 0.90413 0.92124 0.92049 0.76882 0.76026 0.92246 0.90846 0.90875 0.90936 0.93464 0.91503 0.91419 0.78484 0.92486 0.93310 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 10.70 59.85 0.64 1.42 16 2 N -0.75 -6.32 5.72 -72.09 -0.41 -6.73 16 3 C 0.69 9.64 8.50 -86.92 -0.74 8.90 16 4 O -0.53 -10.64 14.74 -18.47 -0.27 -10.92 16 5 N -0.69 -8.22 5.09 -15.78 -0.08 -8.30 16 6 C 0.52 8.57 6.85 -10.99 -0.08 8.49 16 7 O -0.43 -9.94 13.03 -18.21 -0.24 -10.17 16 8 C 0.06 0.89 2.16 -68.87 -0.15 0.75 16 9 H 0.07 0.89 7.99 -51.93 -0.42 0.48 16 10 C -0.14 -1.44 8.80 37.15 0.33 -1.11 16 11 N -0.51 -9.61 4.79 -224.69 -1.08 -10.69 16 12 C 0.05 0.78 6.20 -2.84 -0.02 0.77 16 13 C -0.16 -3.03 6.13 -24.91 -0.15 -3.18 16 14 C 0.22 5.25 0.71 -89.63 -0.06 5.18 16 15 O -0.55 -13.15 8.77 -35.23 -0.31 -13.46 16 16 C -0.56 -15.48 8.86 -34.44 -0.31 -15.79 16 17 H 0.08 2.30 8.01 -52.49 -0.42 1.88 16 18 C 0.07 2.13 5.46 -17.82 -0.10 2.03 16 19 N -0.89 -27.46 13.96 55.43 0.77 -26.69 16 20 Si 0.95 25.52 24.61 -169.99 -4.18 21.33 16 21 H -0.29 -7.54 6.99 56.52 0.40 -7.15 16 22 H -0.33 -9.03 7.11 56.52 0.40 -8.63 16 23 H -0.26 -7.51 5.74 56.52 0.32 -7.19 16 24 C 0.06 1.34 4.57 -2.30 -0.01 1.33 16 25 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.40 1.69 8.84 -40.82 -0.36 1.33 16 29 H 0.41 2.60 8.07 -40.82 -0.33 2.27 16 30 H 0.06 0.39 7.40 -51.93 -0.38 0.00 16 31 H 0.07 0.65 6.45 -51.92 -0.33 0.32 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.62 6.02 -51.93 -0.31 0.31 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.28 8.00 -51.93 -0.42 0.86 16 37 H 0.37 7.80 8.46 45.56 0.39 8.19 16 38 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 39 H 0.05 1.12 7.60 -51.93 -0.39 0.73 16 40 H 0.09 2.48 5.82 -51.93 -0.30 2.17 16 LS Contribution 319.33 15.07 4.81 4.81 Total: -1.00 -40.33 319.33 -6.67 -47.00 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.04 Total: 5.02 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -0.64 Total: 8.79 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.79 Total: -52.40 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.82 Total: -34.55 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -4.18 Total: 21.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -40.33 -6.67 -47.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.242 kcal (2) G-P(sol) polarization free energy of solvation -40.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds