Wall clock time and date at job start Tue Mar 31 2020 03:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00528 * 2 1 4 4 O 1.21532 * 119.99784 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00050 * 179.97438 * 3 2 1 6 6 C 1.34775 * 120.00041 * 179.72401 * 5 3 2 7 7 O 1.21241 * 119.99751 * 359.97438 * 6 5 3 8 8 C 1.50698 * 120.00301 * 179.97438 * 6 5 3 9 9 H 1.08999 * 109.46843 * 60.00367 * 8 6 5 10 10 C 1.52994 * 109.47173 * 300.00253 * 8 6 5 11 11 N 1.46903 * 109.47429 * 179.97438 * 8 6 5 12 12 C 1.47436 * 111.00387 * 175.27481 * 11 8 6 13 13 C 1.54316 * 107.23132 * 123.25758 * 12 11 8 14 14 C 1.55137 * 103.02286 * 22.28901 * 13 12 11 15 15 O 1.42898 * 110.99162 * 82.43403 * 14 13 12 16 16 C 1.50703 * 110.99448 * 206.21746 * 14 13 12 17 17 H 1.07994 * 119.99959 * 27.82084 * 16 14 13 18 18 C 1.37873 * 119.99664 * 207.82184 * 16 14 13 19 19 N 1.31520 * 119.99616 * 171.70950 * 18 16 14 20 20 Si 1.86800 * 120.00420 * 351.71801 * 18 16 14 21 21 H 1.48496 * 109.47386 * 84.91445 * 20 18 16 22 22 H 1.48501 * 109.47072 * 204.91760 * 20 18 16 23 23 H 1.48501 * 109.46943 * 324.91358 * 20 18 16 24 24 C 1.47843 * 110.99932 * 296.12259 * 11 8 6 25 25 H 1.08994 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47174 * 300.00183 * 1 2 3 27 27 H 1.08999 * 109.46641 * 59.99671 * 1 2 3 28 28 H 0.97009 * 119.99820 * 179.97438 * 2 1 3 29 29 H 0.96997 * 120.00267 * 0.02562 * 5 3 2 30 30 H 1.08998 * 109.46980 * 53.74504 * 10 8 6 31 31 H 1.09010 * 109.47183 * 173.74393 * 10 8 6 32 32 H 1.09006 * 109.47398 * 293.74180 * 10 8 6 33 33 H 1.08992 * 109.89589 * 242.67031 * 12 11 8 34 34 H 1.09004 * 109.88874 * 3.69709 * 12 11 8 35 35 H 1.09001 * 110.70509 * 140.67151 * 13 12 11 36 36 H 1.09001 * 110.71275 * 263.73025 * 13 12 11 37 37 H 0.96691 * 114.00133 * 64.67369 * 15 14 13 38 38 H 0.96998 * 119.99740 * 180.02562 * 19 18 16 39 39 H 1.08994 * 110.37445 * 332.46443 * 24 11 8 40 40 H 1.09001 * 110.37131 * 94.80663 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5314 2.2197 0.0005 5 7 3.4867 1.1670 0.0005 6 6 4.1607 2.3341 -0.0051 7 8 3.5545 3.3841 -0.0111 8 6 5.6677 2.3341 -0.0039 9 1 6.0316 1.8156 -0.8910 10 6 6.1767 1.6194 1.2494 11 7 6.1575 3.7190 -0.0115 12 6 7.6268 3.7605 0.1028 13 6 8.1585 4.5401 -1.1183 14 6 6.9322 5.3839 -1.5553 15 8 6.8244 6.5741 -0.7718 16 6 6.9987 5.7123 -3.0246 17 1 7.5176 5.0511 -3.7027 18 6 6.3971 6.8569 -3.5030 19 7 6.5907 7.2297 -4.7493 20 14 5.3072 7.8781 -2.3811 21 1 6.1474 8.8170 -1.5952 22 1 4.3375 8.6487 -3.2004 23 1 4.5701 6.9804 -1.4559 24 6 5.7621 4.4140 -1.2550 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.9500 -0.8401 0.0004 29 1 3.9717 0.3270 0.0005 30 1 5.7247 0.6295 1.3119 31 1 7.2610 1.5210 1.1965 32 1 5.9070 2.1984 2.1327 33 1 7.9131 4.2712 1.0222 34 1 8.0276 2.7469 0.1018 35 1 8.9883 5.1860 -0.8316 36 1 8.4607 3.8555 -1.9108 37 1 7.5594 7.1911 -0.8907 38 1 6.1677 8.0352 -5.0858 39 1 5.6441 3.6984 -2.0686 40 1 4.8378 4.9708 -1.1011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:16 Heat of formation + Delta-G solvation = -124.950047 kcal Electronic energy + Delta-G solvation = -23819.187071 eV Core-core repulsion = 20247.531137 eV Total energy + Delta-G solvation = -3571.655934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.35089 -40.64077 -39.29946 -37.08644 -35.94758 -35.49439 -34.47275 -33.41221 -30.20629 -29.91193 -28.09695 -26.25614 -25.64477 -23.16334 -21.83950 -21.56775 -21.03939 -20.07235 -19.44236 -18.39973 -17.30756 -17.20651 -17.13743 -16.67401 -16.14063 -15.99843 -15.92359 -15.48827 -15.03639 -14.79952 -14.60641 -14.15029 -13.95686 -13.69298 -13.53604 -13.43192 -13.13343 -13.07850 -12.81106 -12.56370 -12.27856 -12.21511 -11.99878 -11.93611 -11.83951 -11.30651 -11.25802 -10.73618 -10.61927 -10.26916 -10.22220 -9.19351 -8.42027 -6.50199 1.01261 1.28933 1.36581 1.47295 1.70747 2.18977 2.38705 2.85034 2.91873 3.08762 3.52133 3.64850 3.86935 4.03770 4.14265 4.24026 4.35163 4.40590 4.60729 4.63907 4.72293 4.80094 4.89863 4.97015 4.98433 5.06134 5.12987 5.28296 5.28836 5.30017 5.39120 5.50714 5.51929 5.94193 6.03923 6.19083 6.55289 6.60461 6.98819 7.12955 7.28623 7.33856 8.70989 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.005188 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.146861 B = 5395.650470 C = 6291.052459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.718 5.718 3 C 0.682 3.318 4 O -0.596 6.596 5 N -0.670 5.670 6 C 0.513 3.487 7 O -0.508 6.508 8 C 0.060 3.940 9 H 0.095 0.905 10 C -0.136 4.136 11 N -0.529 5.529 12 C 0.055 3.945 13 C -0.149 4.149 14 C 0.209 3.791 15 O -0.559 6.559 16 C -0.547 4.547 17 H 0.052 0.948 18 C 0.031 3.969 19 N -0.931 5.931 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.339 1.339 23 H -0.292 1.292 24 C 0.072 3.928 25 H 0.127 0.873 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.423 0.577 29 H 0.434 0.566 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.378 0.622 38 H 0.267 0.733 39 H 0.039 0.961 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 -23.117 13.323 26.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.376 5.376 3 C 0.382 3.618 4 O -0.472 6.472 5 N -0.339 5.339 6 C 0.299 3.701 7 O -0.377 6.377 8 C -0.052 4.052 9 H 0.112 0.888 10 C -0.193 4.193 11 N -0.254 5.254 12 C -0.071 4.071 13 C -0.188 4.188 14 C 0.168 3.832 15 O -0.367 6.367 16 C -0.585 4.585 17 H 0.070 0.930 18 C -0.169 4.169 19 N -0.569 5.569 20 Si 0.834 3.166 21 H -0.196 1.196 22 H -0.272 1.272 23 H -0.219 1.219 24 C -0.055 4.055 25 H 0.145 0.855 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.261 0.739 29 H 0.274 0.726 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.227 0.773 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.141 -21.478 13.824 25.735 hybrid contribution 0.290 0.189 -1.186 1.236 sum -2.851 -21.290 12.638 24.921 Atomic orbital electron populations 1.21654 0.76789 1.04828 1.01247 1.44885 1.08540 1.06224 1.77973 1.16583 0.81934 0.85258 0.77980 1.91065 1.68359 1.32694 1.55115 1.43870 1.06112 1.11842 1.72070 1.21563 0.91459 0.82624 0.74432 1.90866 1.70878 1.32848 1.43096 1.22019 0.88226 0.91753 1.03202 0.88756 1.21955 1.03640 1.00116 0.93604 1.63370 1.12555 1.12677 1.36817 1.22874 0.84938 1.01059 0.98267 1.23251 0.98212 0.99506 0.97833 1.20237 0.92535 0.82765 0.87646 1.86149 1.49644 1.32518 1.68422 1.21566 1.35511 1.08173 0.93225 0.92950 1.25697 0.96308 0.98731 0.96199 1.70053 1.44288 1.25367 1.17222 0.84870 0.77944 0.77623 0.76161 1.19636 1.27214 1.21918 1.22959 0.98465 0.95405 0.88709 0.85494 0.93406 0.93881 0.73862 0.72586 0.88065 0.88543 0.92409 0.89969 0.88949 0.89938 0.91212 0.77298 0.92432 0.94321 0.94107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.31 10.70 127.77 1.37 2.68 16 2 N -0.72 -10.47 5.72 -500.27 -2.86 -13.33 16 3 C 0.68 18.63 8.50 179.06 1.52 20.15 16 4 O -0.60 -25.15 14.74 18.94 0.28 -24.87 16 5 N -0.67 -14.60 5.09 -440.54 -2.24 -16.84 16 6 C 0.51 16.76 6.85 87.66 0.60 17.36 16 7 O -0.51 -24.38 13.03 19.85 0.26 -24.12 16 8 C 0.06 1.56 2.16 44.17 0.10 1.66 16 9 H 0.10 2.04 7.99 -2.39 -0.02 2.02 16 10 C -0.14 -2.03 8.80 71.98 0.63 -1.40 16 11 N -0.53 -19.06 4.79 -864.79 -4.14 -23.20 16 12 C 0.06 1.59 6.20 86.65 0.54 2.13 16 13 C -0.15 -5.32 6.13 31.77 0.19 -5.12 16 14 C 0.21 9.84 0.71 -10.15 -0.01 9.83 16 15 O -0.56 -26.50 8.77 -148.98 -1.31 -27.80 16 16 C -0.55 -31.04 8.86 25.60 0.23 -30.81 16 17 H 0.05 3.19 8.01 -2.91 -0.02 3.16 16 18 C 0.03 1.85 5.46 84.65 0.46 2.32 16 19 N -0.93 -59.00 13.96 21.45 0.30 -58.70 16 20 Si 1.00 54.55 24.61 68.60 1.69 56.24 16 21 H -0.27 -13.51 6.99 99.48 0.70 -12.81 16 22 H -0.34 -18.96 7.11 99.48 0.71 -18.26 16 23 H -0.29 -17.26 5.74 99.48 0.57 -16.69 16 24 C 0.07 3.41 4.57 86.77 0.40 3.81 16 25 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.42 1.87 8.84 -92.70 -0.82 1.05 16 29 H 0.43 3.79 8.07 -92.71 -0.75 3.04 16 30 H 0.10 0.68 7.40 -2.39 -0.02 0.67 16 31 H 0.10 1.06 6.45 -2.38 -0.02 1.05 16 32 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 34 H 0.09 1.86 6.02 -2.39 -0.01 1.85 16 35 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.07 2.45 8.00 -2.39 -0.02 2.43 16 37 H 0.38 15.66 8.46 -74.06 -0.63 15.03 16 38 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 39 H 0.04 1.83 7.60 -2.39 -0.02 1.81 16 40 H 0.04 2.33 5.82 -2.39 -0.01 2.32 16 Total: -1.00 -96.89 319.33 -3.24 -100.13 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -1.25 Total: 9.90 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 6.03 Total: 22.60 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -8.94 Total: -112.07 kcal Atomic # 8 Polarization: -76.03 SS G_CDS: -0.77 Total: -76.80 kcal Atomic # 14 Polarization: 54.55 SS G_CDS: 1.69 Total: 56.24 kcal Total: -96.89 -3.24 -100.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.817 kcal (2) G-P(sol) polarization free energy of solvation -96.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds