Wall clock time and date at job start Tue Mar 31 2020 02:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99673 * 2 1 4 4 O 1.20819 * 120.00104 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99813 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.52356 * 299.92162 * 5 3 2 7 7 C 1.53037 * 109.49734 * 179.83823 * 5 3 2 8 8 C 1.53040 * 109.54181 * 178.68161 * 7 5 3 9 9 H 1.08991 * 109.53248 * 181.33418 * 8 7 5 10 10 O 1.42903 * 109.49562 * 301.41899 * 8 7 5 11 11 C 1.53198 * 109.30924 * 61.36466 * 8 7 5 12 12 N 1.46926 * 108.77416 * 305.36672 * 11 8 7 13 13 C 1.34778 * 120.62819 * 233.62895 * 12 11 8 14 14 O 1.21275 * 119.99956 * 179.97438 * 13 12 11 15 15 C 1.50703 * 120.00205 * 359.97438 * 13 12 11 16 16 C 1.52996 * 109.47114 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.46894 * 180.02562 * 16 15 13 18 18 H 1.07992 * 120.00369 * 359.97438 * 17 16 15 19 19 C 1.37887 * 119.99805 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99762 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99872 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47101 * 89.99845 * 21 19 17 23 23 H 1.48504 * 109.46863 * 210.00032 * 21 19 17 24 24 H 1.48504 * 109.47082 * 329.99501 * 21 19 17 25 25 C 1.46920 * 118.73951 * 53.61367 * 12 11 8 26 26 H 1.08998 * 109.47590 * 60.00221 * 1 2 3 27 27 H 1.09002 * 109.46642 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47009 * 299.99694 * 1 2 3 29 29 H 1.09000 * 109.46257 * 298.70361 * 7 5 3 30 30 H 1.09003 * 109.45936 * 58.66801 * 7 5 3 31 31 H 0.96704 * 113.99807 * 179.83404 * 10 8 7 32 32 H 1.08998 * 109.58454 * 185.58206 * 11 8 7 33 33 H 1.08996 * 109.70366 * 65.22586 * 11 8 7 34 34 H 1.09004 * 109.47298 * 300.00219 * 15 13 12 35 35 H 1.08994 * 109.47085 * 60.00141 * 15 13 12 36 36 H 1.09004 * 109.46932 * 300.00095 * 16 15 13 37 37 H 1.08994 * 109.47314 * 59.99932 * 16 15 13 38 38 H 0.97005 * 119.99823 * 180.02562 * 20 19 17 39 39 H 1.08998 * 109.58534 * 186.60110 * 25 12 11 40 40 H 1.08995 * 109.70522 * 66.24252 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9572 0.7821 0.8896 7 6 4.0008 2.7423 -0.0045 8 6 5.5287 2.8238 0.0281 9 1 5.8375 3.8689 0.0492 10 8 6.0170 2.1586 1.1947 11 6 6.0989 2.1474 -1.2226 12 7 5.5690 0.7793 -1.3034 13 6 6.4019 -0.2736 -1.4225 14 8 5.9522 -1.3981 -1.4878 15 6 7.8919 -0.0538 -1.4745 16 6 8.6019 -1.4021 -1.6112 17 6 10.0919 -1.1823 -1.6626 18 1 10.4923 -0.1811 -1.6041 19 6 10.9439 -2.2596 -1.7843 20 7 10.4562 -3.4789 -1.8550 21 14 12.7907 -1.9871 -1.8487 22 1 13.3445 -2.0214 -0.4713 23 1 13.4209 -3.0575 -2.6625 24 1 13.0749 -0.6656 -2.4637 25 6 4.1142 0.5810 -1.2516 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.6304 3.2284 -0.9071 30 1 3.5917 3.2446 0.8721 31 1 6.9803 2.1688 1.2791 32 1 7.1864 2.1147 -1.1567 33 1 5.8032 2.7067 -2.1101 34 1 8.1369 0.5739 -2.3313 35 1 8.2188 0.4381 -0.5585 36 1 8.3569 -2.0302 -0.7546 37 1 8.2749 -1.8937 -2.5274 38 1 11.0556 -4.2368 -1.9403 39 1 3.8923 -0.4851 -1.2048 40 1 3.6527 1.0117 -2.1401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592932327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:16 Heat of formation + Delta-G solvation = -179.171922 kcal Electronic energy + Delta-G solvation = -23183.483539 eV Core-core repulsion = 19577.183616 eV Total energy + Delta-G solvation = -3606.299922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01444 -39.81539 -37.93397 -36.69608 -35.32666 -33.57500 -32.97792 -30.99073 -30.42557 -28.00533 -26.37509 -25.17191 -24.15718 -21.95457 -21.38351 -20.14303 -18.94440 -17.77262 -17.33964 -16.95300 -16.63371 -16.59661 -15.84100 -15.38946 -15.18579 -14.57817 -14.53897 -14.42544 -14.01975 -13.56941 -13.38154 -12.98374 -12.96678 -12.40343 -12.21041 -12.16111 -12.03747 -11.53156 -11.26299 -11.25950 -11.04218 -10.99361 -10.93641 -10.64465 -10.59399 -10.27291 -9.99107 -9.63929 -9.20800 -9.02855 -8.48191 -8.33033 -5.97578 -4.02319 1.95360 2.46745 3.14329 3.19357 3.31939 3.38378 3.40398 4.02952 4.37329 4.42911 4.46175 4.63942 4.67639 4.82956 4.88639 4.94941 5.03976 5.18767 5.27478 5.34537 5.37416 5.42089 5.48943 5.54324 5.72278 5.90509 5.91115 6.13204 6.15487 6.16914 6.57580 6.84552 7.49090 7.53391 7.65875 7.72390 7.84186 8.05426 8.35800 8.68873 9.06030 9.61306 11.13303 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028218 B = 0.003590 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.022007 B = 7797.819528 C = 8492.768459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.472 3.528 4 O -0.510 6.510 5 C -0.092 4.092 6 H 0.124 0.876 7 C -0.095 4.095 8 C 0.092 3.908 9 H 0.073 0.927 10 O -0.560 6.560 11 C 0.073 3.927 12 N -0.617 5.617 13 C 0.516 3.484 14 O -0.528 6.528 15 C -0.126 4.126 16 C 0.037 3.963 17 C -0.528 4.528 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.123 3.877 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.383 0.617 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.024 0.976 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.106 0.894 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.491 14.178 3.403 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.314 3.686 4 O -0.398 6.398 5 C -0.112 4.112 6 H 0.142 0.858 7 C -0.132 4.132 8 C 0.032 3.968 9 H 0.091 0.909 10 O -0.366 6.366 11 C -0.051 4.051 12 N -0.352 5.352 13 C 0.307 3.693 14 O -0.403 6.403 15 C -0.166 4.166 16 C -0.001 4.001 17 C -0.566 4.566 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.527 5.527 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.000 4.000 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.231 0.769 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.124 0.876 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.534 13.530 3.426 21.637 hybrid contribution 1.325 0.367 -0.105 1.378 sum -15.210 13.897 3.321 20.868 Atomic orbital electron populations 1.23285 0.76337 1.03870 1.02410 1.86575 1.23420 1.33237 1.83694 1.23695 0.91776 0.81324 0.71792 1.90646 1.67174 1.36381 1.45550 1.21409 0.86671 0.99627 1.03490 0.85839 1.21439 0.93543 0.93988 1.04248 1.22176 0.94012 0.95345 0.85293 0.90878 1.86514 1.27270 1.79607 1.43203 1.22512 1.00762 0.83508 0.98311 1.48094 1.05367 1.06609 1.75174 1.21593 0.90069 0.83541 0.74144 1.90673 1.78228 1.22964 1.48420 1.21877 0.88225 1.04395 1.02112 1.18911 0.93534 0.89067 0.98582 1.21194 0.91409 0.92896 1.51094 0.92655 1.25026 0.98809 0.95220 0.95304 1.69998 1.34865 0.98157 1.49677 0.86598 0.85582 0.77812 0.77982 1.20664 1.21232 1.19909 1.21324 0.81400 1.02870 0.94423 0.91882 0.87946 0.91945 0.89574 0.90062 0.76903 0.88279 0.90569 0.90334 0.90285 0.95753 0.95824 0.92922 0.87614 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.16 10.49 -39.26 -0.41 -4.57 16 3 C 0.47 5.77 7.26 36.01 0.26 6.03 16 4 O -0.51 -6.98 15.73 -18.74 -0.29 -7.27 16 5 C -0.09 -1.08 2.64 -91.65 -0.24 -1.32 16 6 H 0.12 1.60 7.61 -51.93 -0.40 1.21 16 7 C -0.09 -0.93 4.21 -26.69 -0.11 -1.05 16 8 C 0.09 0.82 3.81 -26.61 -0.10 0.72 16 9 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 10 O -0.56 -5.93 12.51 -35.23 -0.44 -6.37 16 11 C 0.07 0.73 5.98 -3.71 -0.02 0.71 16 12 N -0.62 -8.70 2.91 -172.77 -0.50 -9.21 16 13 C 0.52 9.78 7.70 -10.98 -0.08 9.69 16 14 O -0.53 -12.35 15.39 5.56 0.09 -12.26 16 15 C -0.13 -2.45 3.99 -27.88 -0.11 -2.56 16 16 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 17 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 18 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 21 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 C 0.12 1.61 5.64 -3.71 -0.02 1.59 16 26 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.09 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.38 2.93 9.08 45.56 0.41 3.35 16 32 H 0.10 0.94 5.93 -51.93 -0.31 0.63 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.38 7.94 -51.93 -0.41 0.97 16 35 H 0.08 1.35 7.69 -51.93 -0.40 0.95 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.11 1.61 7.00 -51.93 -0.36 1.25 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -35.93 334.35 -5.93 -41.86 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.22 Total: 0.23 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 0.10 Total: 2.66 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.23 Total: -35.59 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -1.06 Total: -30.48 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.93 -5.93 -41.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592932327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.311 kcal (2) G-P(sol) polarization free energy of solvation -35.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds