Wall clock time and date at job start Tue Mar 31 2020 02:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99673 * 2 1 4 4 O 1.20819 * 120.00104 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99813 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.52356 * 299.92162 * 5 3 2 7 7 C 1.53037 * 109.49734 * 179.83823 * 5 3 2 8 8 C 1.53040 * 109.54181 * 178.68161 * 7 5 3 9 9 H 1.08991 * 109.53248 * 181.33418 * 8 7 5 10 10 O 1.42903 * 109.49562 * 301.41899 * 8 7 5 11 11 C 1.53198 * 109.30924 * 61.36466 * 8 7 5 12 12 N 1.46926 * 108.77416 * 305.36672 * 11 8 7 13 13 C 1.34778 * 120.62819 * 233.62895 * 12 11 8 14 14 O 1.21275 * 119.99956 * 179.97438 * 13 12 11 15 15 C 1.50703 * 120.00205 * 359.97438 * 13 12 11 16 16 C 1.52996 * 109.47114 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.46894 * 180.02562 * 16 15 13 18 18 H 1.07992 * 120.00369 * 359.97438 * 17 16 15 19 19 C 1.37887 * 119.99805 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99762 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99872 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47101 * 89.99845 * 21 19 17 23 23 H 1.48504 * 109.46863 * 210.00032 * 21 19 17 24 24 H 1.48504 * 109.47082 * 329.99501 * 21 19 17 25 25 C 1.46920 * 118.73951 * 53.61367 * 12 11 8 26 26 H 1.08998 * 109.47590 * 60.00221 * 1 2 3 27 27 H 1.09002 * 109.46642 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47009 * 299.99694 * 1 2 3 29 29 H 1.09000 * 109.46257 * 298.70361 * 7 5 3 30 30 H 1.09003 * 109.45936 * 58.66801 * 7 5 3 31 31 H 0.96704 * 113.99807 * 179.83404 * 10 8 7 32 32 H 1.08998 * 109.58454 * 185.58206 * 11 8 7 33 33 H 1.08996 * 109.70366 * 65.22586 * 11 8 7 34 34 H 1.09004 * 109.47298 * 300.00219 * 15 13 12 35 35 H 1.08994 * 109.47085 * 60.00141 * 15 13 12 36 36 H 1.09004 * 109.46932 * 300.00095 * 16 15 13 37 37 H 1.08994 * 109.47314 * 59.99932 * 16 15 13 38 38 H 0.97005 * 119.99823 * 180.02562 * 20 19 17 39 39 H 1.08998 * 109.58534 * 186.60110 * 25 12 11 40 40 H 1.08995 * 109.70522 * 66.24252 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9572 0.7821 0.8896 7 6 4.0008 2.7423 -0.0045 8 6 5.5287 2.8238 0.0281 9 1 5.8375 3.8689 0.0492 10 8 6.0170 2.1586 1.1947 11 6 6.0989 2.1474 -1.2226 12 7 5.5690 0.7793 -1.3034 13 6 6.4019 -0.2736 -1.4225 14 8 5.9522 -1.3981 -1.4878 15 6 7.8919 -0.0538 -1.4745 16 6 8.6019 -1.4021 -1.6112 17 6 10.0919 -1.1823 -1.6626 18 1 10.4923 -0.1811 -1.6041 19 6 10.9439 -2.2596 -1.7843 20 7 10.4562 -3.4789 -1.8550 21 14 12.7907 -1.9871 -1.8487 22 1 13.3445 -2.0214 -0.4713 23 1 13.4209 -3.0575 -2.6625 24 1 13.0749 -0.6656 -2.4637 25 6 4.1142 0.5810 -1.2516 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.6304 3.2284 -0.9071 30 1 3.5917 3.2446 0.8721 31 1 6.9803 2.1688 1.2791 32 1 7.1864 2.1147 -1.1567 33 1 5.8032 2.7067 -2.1101 34 1 8.1369 0.5739 -2.3313 35 1 8.2188 0.4381 -0.5585 36 1 8.3569 -2.0302 -0.7546 37 1 8.2749 -1.8937 -2.5274 38 1 11.0556 -4.2368 -1.9403 39 1 3.8923 -0.4851 -1.2048 40 1 3.6527 1.0117 -2.1401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592932327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:16 Heat of formation + Delta-G solvation = -206.293295 kcal Electronic energy + Delta-G solvation = -23184.659610 eV Core-core repulsion = 19577.183616 eV Total energy + Delta-G solvation = -3607.475993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.99580 -40.99241 -39.07567 -37.62771 -36.33373 -35.55617 -34.20735 -32.77199 -31.36052 -28.80607 -28.05281 -26.30449 -25.38645 -23.32734 -22.66558 -21.13800 -20.11431 -18.99078 -18.64249 -17.96896 -17.89244 -17.53030 -17.34161 -16.57402 -16.43817 -16.29989 -15.68692 -15.35114 -15.08338 -14.56599 -14.41565 -14.39847 -14.10975 -13.96520 -13.65227 -13.22846 -13.07115 -12.87921 -12.79443 -12.44444 -12.40048 -12.17417 -11.98268 -11.89404 -11.85041 -11.63427 -11.49881 -11.27307 -11.07634 -10.63972 -10.53968 -9.60838 -8.15001 -6.28922 0.97167 1.44785 1.47379 1.57847 1.59212 1.72350 2.04363 2.45596 3.18437 3.29977 3.50750 3.61314 3.72000 3.89310 3.90604 4.04174 4.15620 4.25041 4.29576 4.44605 4.51264 4.56351 4.65124 4.65847 4.67514 4.74384 4.80643 4.97544 5.09136 5.11557 5.27758 5.48396 5.55488 5.65980 5.88417 6.19870 6.37231 6.58041 6.90040 6.93332 7.26652 7.41534 8.97754 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028218 B = 0.003590 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.022007 B = 7797.819528 C = 8492.768459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.369 6.369 3 C 0.475 3.525 4 O -0.524 6.524 5 C -0.084 4.084 6 H 0.107 0.893 7 C -0.094 4.094 8 C 0.097 3.903 9 H 0.112 0.888 10 O -0.583 6.583 11 C 0.063 3.937 12 N -0.604 5.604 13 C 0.513 3.487 14 O -0.589 6.589 15 C -0.112 4.112 16 C 0.042 3.958 17 C -0.539 4.539 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.973 3.027 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.253 1.253 25 C 0.124 3.876 26 H 0.068 0.932 27 H 0.125 0.875 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.395 0.605 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.109 0.891 36 H -0.020 1.020 37 H -0.021 1.021 38 H 0.262 0.738 39 H 0.076 0.924 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.672 17.515 3.358 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.318 3.682 4 O -0.413 6.413 5 C -0.104 4.104 6 H 0.125 0.875 7 C -0.131 4.131 8 C 0.038 3.962 9 H 0.129 0.871 10 O -0.392 6.392 11 C -0.059 4.059 12 N -0.337 5.337 13 C 0.304 3.696 14 O -0.469 6.469 15 C -0.152 4.152 16 C 0.004 3.996 17 C -0.577 4.577 18 H 0.098 0.902 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.797 3.203 22 H -0.198 1.198 23 H -0.216 1.216 24 H -0.176 1.176 25 C 0.000 4.000 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.245 0.755 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.127 0.873 36 H -0.002 1.002 37 H -0.002 1.002 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.729 16.948 3.392 23.370 hybrid contribution 0.945 -0.670 -0.077 1.161 sum -14.784 16.278 3.315 22.238 Atomic orbital electron populations 1.23579 0.74487 1.05663 1.02874 1.86570 1.25395 1.33140 1.83381 1.23725 0.91903 0.81231 0.71343 1.90633 1.67506 1.36754 1.46375 1.21319 0.86374 1.00951 1.01792 0.87529 1.21512 0.94501 0.92159 1.04933 1.22283 0.93021 0.96928 0.84013 0.87073 1.86498 1.28576 1.80113 1.43969 1.22964 1.01536 0.81029 1.00378 1.48009 1.05403 1.07373 1.72911 1.21468 0.90408 0.83692 0.74025 1.90655 1.79011 1.25594 1.51629 1.21634 0.88152 1.00669 1.04724 1.18698 0.94415 0.91989 0.94492 1.21712 0.91953 0.93974 1.50038 0.90211 1.26149 1.04842 0.94793 0.94787 1.70189 1.37025 0.99459 1.51249 0.85330 0.78279 0.78400 0.78277 1.19776 1.21551 1.17631 1.21342 0.80861 1.01605 0.96158 0.91368 0.85636 0.91519 0.88069 0.90225 0.75506 0.87168 0.87617 0.87636 0.87284 1.00193 1.00214 0.92971 0.90577 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.37 -8.66 10.49 -51.44 -0.54 -9.20 16 3 C 0.47 11.33 7.26 71.24 0.52 11.85 16 4 O -0.52 -13.69 15.73 21.99 0.35 -13.35 16 5 C -0.08 -1.90 2.64 -11.46 -0.03 -1.93 16 6 H 0.11 2.79 7.61 -2.39 -0.02 2.77 16 7 C -0.09 -1.59 4.21 30.62 0.13 -1.46 16 8 C 0.10 1.37 3.81 30.67 0.12 1.49 16 9 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 10 O -0.58 -10.91 12.51 -148.98 -1.86 -12.78 16 11 C 0.06 1.02 5.98 86.36 0.52 1.54 16 12 N -0.60 -16.24 2.91 -818.92 -2.39 -18.63 16 13 C 0.51 19.65 7.70 87.66 0.67 20.32 16 14 O -0.59 -29.19 15.39 -3.02 -0.05 -29.24 16 15 C -0.11 -4.27 3.99 29.85 0.12 -4.15 16 16 C 0.04 2.28 4.26 29.85 0.13 2.41 16 17 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 18 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 19 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 20 N -0.94 -59.30 13.29 21.45 0.28 -59.02 16 21 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 25 C 0.12 3.17 5.64 86.37 0.49 3.66 16 26 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 27 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16 29 H 0.10 1.44 8.13 -2.39 -0.02 1.42 16 30 H 0.08 1.43 8.07 -2.39 -0.02 1.41 16 31 H 0.39 4.94 9.08 -74.05 -0.67 4.27 16 32 H 0.11 1.59 5.93 -2.39 -0.01 1.58 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 3.44 7.94 -2.38 -0.02 3.42 16 35 H 0.11 3.47 7.69 -2.39 -0.02 3.45 16 36 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 37 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 38 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 39 H 0.08 2.44 7.00 -2.39 -0.02 2.42 16 40 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -82.65 334.35 2.75 -79.90 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.37 Total: 11.10 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 4.55 Total: 5.75 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -2.10 Total: -77.65 kcal Atomic # 8 Polarization: -62.45 SS G_CDS: -2.10 Total: -64.56 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -82.65 2.75 -79.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592932327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.393 kcal (2) G-P(sol) polarization free energy of solvation -82.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds