Wall clock time and date at job start Tue Mar 31 2020 02:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34228 * 116.99776 * 2 1 4 4 O 1.20826 * 120.00004 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99598 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.50184 * 300.07799 * 5 3 2 7 7 C 1.53192 * 109.49556 * 60.17801 * 5 3 2 8 8 C 1.53127 * 109.11410 * 62.31508 * 7 5 3 9 9 C 1.53034 * 109.30995 * 57.63921 * 8 7 5 10 10 H 1.09005 * 109.46647 * 60.81573 * 9 8 7 11 11 C 1.50694 * 109.46518 * 180.79355 * 9 8 7 12 12 O 1.20828 * 120.00074 * 91.82430 * 11 9 8 13 13 O 1.34229 * 120.00209 * 271.82488 * 11 9 8 14 14 C 1.45203 * 116.99935 * 179.97438 * 13 11 9 15 15 N 1.46852 * 109.52281 * 300.80096 * 9 8 7 16 16 C 1.46905 * 110.99884 * 185.83936 * 15 9 8 17 17 C 1.50697 * 109.46847 * 185.04101 * 16 15 9 18 18 H 1.08001 * 120.00139 * 354.78672 * 17 16 15 19 19 C 1.37874 * 120.00037 * 174.78615 * 17 16 15 20 20 N 1.31519 * 120.00087 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00015 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47028 * 89.99782 * 21 19 17 23 23 H 1.48501 * 109.47077 * 210.00012 * 21 19 17 24 24 H 1.48505 * 109.46935 * 330.00167 * 21 19 17 25 25 C 1.46846 * 111.19641 * 61.74143 * 15 9 8 26 26 H 1.09005 * 109.46873 * 299.99937 * 1 2 3 27 27 H 1.08999 * 109.47072 * 59.99580 * 1 2 3 28 28 H 1.09004 * 109.47047 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.57948 * 302.41047 * 7 5 3 30 30 H 1.08994 * 109.52036 * 182.18870 * 7 5 3 31 31 H 1.08993 * 109.50292 * 297.67475 * 8 7 5 32 32 H 1.09005 * 109.50372 * 177.59421 * 8 7 5 33 33 H 1.09002 * 109.46784 * 299.99902 * 14 13 11 34 34 H 1.08998 * 109.47548 * 59.99848 * 14 13 11 35 35 H 1.09006 * 109.46902 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.47069 * 305.03776 * 16 15 9 37 37 H 1.08999 * 109.47116 * 65.03937 * 16 15 9 38 38 H 0.97003 * 119.99907 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.46630 * 58.27777 * 25 15 9 40 40 H 1.09004 * 109.45921 * 178.25156 * 25 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9563 0.7798 0.8900 7 6 4.1150 0.5841 -1.2519 8 6 3.6098 1.3234 -2.4941 9 6 4.0433 2.7892 -2.4219 10 1 5.1316 2.8454 -2.3962 11 6 3.5311 3.5246 -3.6335 12 8 2.4600 4.0824 -3.5936 13 8 4.2649 3.5600 -4.7569 14 6 3.7089 4.2863 -5.8847 15 7 3.4928 3.4045 -1.2074 16 6 3.7725 4.8463 -1.1746 17 6 3.3037 5.4191 0.1381 18 1 2.7689 4.7955 0.8392 19 6 3.5576 6.7393 0.4442 20 7 3.1481 7.2393 1.5896 21 14 4.4820 7.8181 -0.7687 22 1 3.5146 8.4748 -1.6842 23 1 5.2445 8.8549 -0.0277 24 1 5.4217 6.9822 -1.5584 25 6 4.0011 2.7421 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.7717 -0.4500 -1.2788 30 1 5.2045 0.6068 -1.2326 31 1 2.5220 1.2670 -2.5338 32 1 4.0309 0.8630 -3.3880 33 1 2.7567 3.8395 -6.1707 34 1 3.5519 5.3279 -5.6045 35 1 4.4010 4.2369 -6.7254 36 1 4.8448 5.0109 -1.2805 37 1 3.2469 5.3372 -1.9936 38 1 3.3263 8.1682 1.8047 39 1 5.0896 2.7984 0.0150 40 1 3.6000 3.2397 0.8836 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599580668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:54 Heat of formation + Delta-G solvation = -177.710203 kcal Electronic energy + Delta-G solvation = -24443.443012 eV Core-core repulsion = 20837.206475 eV Total energy + Delta-G solvation = -3606.236537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.06636 -41.29855 -39.39264 -37.47621 -37.11044 -35.59035 -34.03175 -32.74018 -29.60555 -29.01350 -28.48959 -25.90098 -25.45135 -23.33245 -22.89272 -21.66151 -20.36445 -19.08534 -18.74083 -18.12970 -17.80030 -17.46955 -17.41334 -17.08651 -16.52461 -15.98771 -15.37371 -15.24651 -14.91579 -14.74476 -14.63052 -14.33728 -13.99117 -13.78394 -13.61118 -13.46805 -13.13886 -13.02896 -12.88042 -12.67860 -12.52234 -12.26285 -11.96049 -11.91244 -11.83127 -11.72196 -11.63501 -11.14635 -11.09573 -11.04804 -10.79445 -9.01047 -8.30352 -6.32604 1.12677 1.25508 1.28644 1.37411 1.49802 1.62785 1.91894 2.28939 3.01346 3.03319 3.64654 3.69420 3.83830 3.92847 4.05928 4.14858 4.27134 4.28804 4.32527 4.35722 4.39985 4.56823 4.64081 4.64544 4.74405 4.76007 4.80184 4.89536 4.99996 5.06739 5.19125 5.26573 5.30609 5.50889 5.59310 5.89305 6.27557 6.53081 6.73844 6.81849 7.06857 7.29200 8.85773 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012594 B = 0.007883 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.781324 B = 3551.017373 C = 5014.714152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.453 3.547 4 O -0.514 6.514 5 C -0.076 4.076 6 H 0.147 0.853 7 C -0.096 4.096 8 C -0.104 4.104 9 C 0.085 3.915 10 H 0.092 0.908 11 C 0.459 3.541 12 O -0.522 6.522 13 O -0.360 6.360 14 C 0.027 3.973 15 N -0.521 5.521 16 C 0.171 3.829 17 C -0.508 4.508 18 H 0.046 0.954 19 C 0.010 3.990 20 N -0.945 5.945 21 Si 0.939 3.061 22 H -0.279 1.279 23 H -0.272 1.272 24 H -0.249 1.249 25 C 0.078 3.922 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.138 0.862 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.045 0.955 32 H 0.114 0.886 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.142 0.858 36 H -0.006 1.006 37 H 0.013 0.987 38 H 0.267 0.733 39 H 0.064 0.936 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.622 -18.321 -11.058 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.280 6.280 3 C 0.295 3.705 4 O -0.400 6.400 5 C -0.095 4.095 6 H 0.164 0.836 7 C -0.133 4.133 8 C -0.142 4.142 9 C -0.025 4.025 10 H 0.109 0.891 11 C 0.301 3.699 12 O -0.409 6.409 13 O -0.276 6.276 14 C -0.066 4.066 15 N -0.247 5.247 16 C 0.044 3.956 17 C -0.547 4.547 18 H 0.064 0.936 19 C -0.187 4.187 20 N -0.586 5.586 21 Si 0.763 3.237 22 H -0.205 1.205 23 H -0.197 1.197 24 H -0.173 1.173 25 C -0.049 4.049 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.156 0.844 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.064 0.936 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.160 0.840 36 H 0.012 0.988 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.546 -17.734 -11.000 21.358 hybrid contribution 0.010 1.828 -0.153 1.834 sum 4.557 -15.906 -11.153 19.954 Atomic orbital electron populations 1.23379 0.76136 1.05198 1.01429 1.86455 1.23812 1.33044 1.84673 1.24194 0.92995 0.81025 0.72271 1.90833 1.67574 1.37584 1.43987 1.21440 0.86327 0.97274 1.04429 0.83586 1.21669 1.03084 0.99707 0.88882 1.21669 1.00900 0.89809 1.01815 1.21558 0.99244 0.95650 0.86020 0.89068 1.24108 0.82877 0.77909 0.84964 1.90685 1.24076 1.42755 1.83369 1.86479 1.49484 1.69361 1.22291 1.23547 1.01322 0.95431 0.86283 1.61532 1.59500 1.03294 1.00420 1.19961 0.93240 0.85942 0.96469 1.21234 1.35218 0.96276 1.01928 0.93610 1.25771 0.96785 0.99154 0.96974 1.70042 1.48762 1.15217 1.24545 0.85849 0.79443 0.79062 0.79391 1.20461 1.19653 1.17316 1.21921 0.97887 0.91972 0.93168 0.93219 0.93537 0.84416 0.87085 0.86729 0.93640 0.86748 0.91829 0.93420 0.83971 0.98830 0.96894 0.92444 0.91793 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.36 -10.01 10.44 -51.40 -0.54 -10.54 16 3 C 0.45 15.62 5.97 71.24 0.43 16.04 16 4 O -0.51 -24.17 14.99 21.96 0.33 -23.84 16 5 C -0.08 -2.05 3.13 -11.46 -0.04 -2.08 16 6 H 0.15 2.88 8.14 -2.39 -0.02 2.86 16 7 C -0.10 -1.79 5.47 30.70 0.17 -1.63 16 8 C -0.10 -2.58 5.10 30.65 0.16 -2.43 16 9 C 0.08 2.85 2.34 44.19 0.10 2.95 16 10 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 11 C 0.46 17.18 6.16 71.23 0.44 17.62 16 12 O -0.52 -24.38 14.84 21.96 0.33 -24.06 16 13 O -0.36 -10.71 10.57 -51.41 -0.54 -11.26 16 14 C 0.03 0.64 10.56 113.37 1.20 1.83 16 15 N -0.52 -22.85 3.22 -880.04 -2.84 -25.69 16 16 C 0.17 8.95 3.43 85.56 0.29 9.24 16 17 C -0.51 -31.37 8.83 25.60 0.23 -31.14 16 18 H 0.05 3.16 6.50 -2.91 -0.02 3.14 16 19 C 0.01 0.64 5.47 84.65 0.46 1.11 16 20 N -0.94 -61.62 13.96 21.45 0.30 -61.32 16 21 Si 0.94 46.93 27.58 68.60 1.89 48.82 16 22 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.25 -11.56 6.39 99.48 0.64 -10.92 16 25 C 0.08 2.92 4.14 86.33 0.36 3.28 16 26 H 0.05 1.28 8.13 -2.38 -0.02 1.26 16 27 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 28 H 0.14 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.11 1.53 8.07 -2.39 -0.02 1.51 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.40 7.35 -2.39 -0.02 1.38 16 32 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 34 H 0.05 1.25 8.13 -2.39 -0.02 1.24 16 35 H 0.14 2.00 8.14 -2.38 -0.02 1.98 16 36 H -0.01 -0.29 6.82 -2.39 -0.02 -0.31 16 37 H 0.01 0.75 5.80 -2.39 -0.01 0.73 16 38 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 3.03 5.77 -2.38 -0.01 3.02 16 Total: -1.00 -87.45 325.50 4.89 -82.57 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.97 Total: 8.55 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 4.99 Total: 16.76 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -2.54 Total: -87.00 kcal Atomic # 8 Polarization: -69.27 SS G_CDS: -0.42 Total: -69.69 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.89 Total: 48.82 kcal Total: -87.45 4.89 -82.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599580668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.143 kcal (2) G-P(sol) polarization free energy of solvation -87.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds