Wall clock time and date at job start Tue Mar 31 2020 02:34:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52999 * 109.46902 * 2 1
4 4 C 1.52990 * 109.47236 * 240.00066 * 2 1 3
5 5 O 1.45201 * 109.46888 * 119.99621 * 2 1 3
6 6 C 1.34232 * 116.99836 * 60.00629 * 5 2 1
7 7 O 1.20820 * 119.99933 * 359.97438 * 6 5 2
8 8 C 1.50699 * 119.99583 * 179.97438 * 6 5 2
9 9 H 1.08997 * 109.55567 * 55.12474 * 8 6 5
10 10 C 1.53299 * 109.51214 * 294.99615 * 8 6 5
11 11 N 1.47148 * 108.38314 * 187.77566 * 10 8 6
12 12 C 1.34780 * 120.98506 * 230.51292 * 11 10 8
13 13 O 1.21686 * 119.99713 * 355.23194 * 12 11 10
14 14 C 1.46376 * 120.00269 * 175.22934 * 12 11 10
15 15 H 1.08004 * 119.99586 * 7.88955 * 14 12 11
16 16 C 1.40044 * 120.00043 * 187.89277 * 14 12 11
17 17 N 1.30675 * 119.99954 * 359.97438 * 16 14 12
18 18 Si 1.86796 * 120.00099 * 180.02562 * 16 14 12
19 19 H 1.48494 * 109.47493 * 89.99565 * 18 16 14
20 20 H 1.48501 * 109.47037 * 210.00098 * 18 16 14
21 21 H 1.48505 * 109.47123 * 329.99317 * 18 16 14
22 22 C 1.47152 * 118.03618 * 50.54005 * 11 10 8
23 23 C 1.53301 * 108.38360 * 309.45944 * 22 11 10
24 24 O 1.42962 * 109.21814 * 52.30547 * 23 22 11
25 25 H 1.09000 * 109.47819 * 299.99826 * 1 2 3
26 26 H 1.08998 * 109.47526 * 60.00193 * 1 2 3
27 27 H 1.09003 * 109.46908 * 180.02562 * 1 2 3
28 28 H 1.08996 * 109.47418 * 179.97438 * 3 2 1
29 29 H 1.09007 * 109.47041 * 300.00069 * 3 2 1
30 30 H 1.09008 * 109.46998 * 59.99586 * 3 2 1
31 31 H 1.09004 * 109.47449 * 299.99975 * 4 2 1
32 32 H 1.09003 * 109.47373 * 60.00120 * 4 2 1
33 33 H 1.09005 * 109.47437 * 179.97438 * 4 2 1
34 34 H 1.09000 * 109.68103 * 307.49826 * 10 8 6
35 35 H 1.08998 * 109.68029 * 68.05529 * 10 8 6
36 36 H 0.97000 * 120.00030 * 180.02562 * 17 16 14
37 37 H 1.09005 * 109.68409 * 189.74318 * 22 11 10
38 38 H 1.08999 * 109.71888 * 69.20373 * 22 11 10
39 39 H 1.08996 * 109.51254 * 292.38264 * 23 22 11
40 40 H 1.09000 * 109.55508 * 172.25038 * 23 22 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2492
5 8 2.0139 -0.6844 1.1856
6 6 1.6533 -1.9684 1.3379
7 8 0.9560 -2.5025 0.5083
8 6 2.1182 -2.7436 2.5437
9 1 1.8297 -2.2138 3.4515
10 6 3.6434 -2.8919 2.5002
11 7 4.0517 -3.8057 3.5788
12 6 5.0300 -3.4672 4.4419
13 8 5.6489 -2.4314 4.2841
14 6 5.3481 -4.3454 5.5689
15 1 4.8906 -5.3213 5.6388
16 6 6.2453 -3.9202 6.5565
17 7 6.7991 -2.7396 6.4716
18 14 6.6517 -5.0412 7.9944
19 1 7.8213 -5.8876 7.6471
20 1 6.9731 -4.2183 9.1881
21 1 5.4835 -5.9087 8.2913
22 6 3.3608 -5.1005 3.6870
23 6 1.8494 -4.8446 3.6727
24 8 1.5188 -4.0415 2.5371
25 1 -0.3635 0.5138 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 3.1299 1.4426 0.0005
29 1 1.6765 1.9564 -0.8900
30 1 1.6765 1.9564 0.8900
31 1 1.6767 -1.7489 -1.2492
32 1 1.6767 -0.2074 -2.1392
33 1 3.1300 -0.7208 -1.2494
34 1 3.9449 -3.3031 1.5368
35 1 4.1112 -1.9184 2.6471
36 1 7.4208 -2.4452 7.1555
37 1 3.6414 -5.5895 4.6199
38 1 3.6338 -5.7346 2.8436
39 1 1.5599 -4.3224 4.5846
40 1 1.3190 -5.7950 3.6133
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000613978637.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:34:24
Heat of formation + Delta-G solvation = -158.636679 kcal
Electronic energy + Delta-G solvation = -23672.700264 eV
Core-core repulsion = 20067.290817 eV
Total energy + Delta-G solvation = -3605.409447 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.145 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.86845 -39.11424 -37.08637 -36.46359 -34.16462 -33.49080 -32.59145 -31.36541
-27.53775 -27.49492 -27.46937 -26.56329 -24.22158 -22.66105 -21.30052 -19.56704
-19.28725 -17.46441 -16.80036 -16.44382 -16.10111 -15.84624 -15.74990 -14.81719
-14.66255 -14.49735 -14.24866 -14.03753 -13.67851 -13.53288 -13.06960 -12.55305
-12.41442 -12.25252 -12.00308 -11.97022 -11.81608 -11.75979 -11.50292 -11.32367
-11.25372 -11.04744 -11.02219 -10.43590 -10.38834 -10.32433 -10.20394 -9.75076
-9.68884 -8.94499 -7.72760 -7.40440 -6.30575 -4.76009 2.28894 2.41810
3.08436 3.15523 3.18111 3.92223 4.11161 4.33279 4.44043 4.61372
4.67118 4.79446 4.83821 5.08840 5.22318 5.37707 5.42537 5.43066
5.54014 5.59468 5.62094 5.72513 5.74172 5.76479 5.79837 5.92102
5.95009 6.15645 6.20366 6.21145 6.27161 6.43489 6.54269 7.20499
7.34058 7.37289 7.94682 7.95807 8.18807 8.91529 9.25587 10.44319
10.63167
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.026922 B = 0.004239 C = 0.003825
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1039.795329 B = 6603.876543 C = 7317.794813
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.116 3.884
3 C -0.141 4.141
4 C -0.184 4.184
5 O -0.343 6.343
6 C 0.479 3.521
7 O -0.488 6.488
8 C 0.087 3.913
9 H 0.097 0.903
10 C 0.105 3.895
11 N -0.643 5.643
12 C 0.560 3.440
13 O -0.572 6.572
14 C -0.544 4.544
15 H 0.074 0.926
16 C 0.088 3.912
17 N -0.766 5.766
18 Si 0.909 3.091
19 H -0.271 1.271
20 H -0.279 1.279
21 H -0.264 1.264
22 C 0.085 3.915
23 C 0.049 3.951
24 O -0.365 6.365
25 H 0.061 0.939
26 H 0.070 0.930
27 H 0.083 0.917
28 H 0.069 0.931
29 H 0.077 0.923
30 H 0.067 0.933
31 H 0.083 0.917
32 H 0.069 0.931
33 H 0.064 0.936
34 H 0.055 0.945
35 H 0.105 0.895
36 H 0.270 0.730
37 H 0.106 0.894
38 H 0.054 0.946
39 H 0.058 0.942
40 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.715 2.364 -8.687 13.995
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C 0.080 3.920
3 C -0.198 4.198
4 C -0.241 4.241
5 O -0.261 6.261
6 C 0.320 3.680
7 O -0.375 6.375
8 C 0.027 3.973
9 H 0.114 0.886
10 C -0.020 4.020
11 N -0.383 5.383
12 C 0.367 3.633
13 O -0.454 6.454
14 C -0.580 4.580
15 H 0.092 0.908
16 C -0.132 4.132
17 N -0.394 5.394
18 Si 0.733 3.267
19 H -0.196 1.196
20 H -0.204 1.204
21 H -0.188 1.188
22 C -0.040 4.040
23 C -0.029 4.029
24 O -0.284 6.284
25 H 0.080 0.920
26 H 0.089 0.911
27 H 0.102 0.898
28 H 0.089 0.911
29 H 0.095 0.905
30 H 0.086 0.914
31 H 0.102 0.898
32 H 0.088 0.912
33 H 0.083 0.917
34 H 0.073 0.927
35 H 0.123 0.877
36 H 0.081 0.919
37 H 0.124 0.876
38 H 0.072 0.928
39 H 0.076 0.924
40 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -10.550 2.901 -9.104 14.234
hybrid contribution 0.190 -0.554 0.779 0.975
sum -10.360 2.347 -8.325 13.496
Atomic orbital electron populations
1.22496 0.94139 1.04751 1.02627 1.22200 0.94309 0.92375 0.83069
1.21854 1.02617 0.92427 1.02907 1.22500 1.02035 1.03117 0.96456
1.86581 1.69733 1.24706 1.45039 1.23020 0.77374 0.80654 0.86914
1.90548 1.34543 1.69814 1.42561 1.21855 0.95631 0.85490 0.94337
0.88578 1.21589 0.89844 0.98370 0.92225 1.48365 1.40688 1.16715
1.32537 1.18327 0.77551 0.86461 0.81003 1.90607 1.52059 1.27915
1.74804 1.20922 1.27788 1.02668 1.06619 0.90772 1.25729 0.94154
0.94886 0.98478 1.69998 1.21111 1.17127 1.31212 0.86347 0.79478
0.80400 0.80436 1.19641 1.20387 1.18815 1.22160 0.90881 0.87486
1.03448 1.23170 0.96610 0.94991 0.88082 1.87901 1.70831 1.24442
1.45240 0.91961 0.91123 0.89786 0.91149 0.90453 0.91376 0.89780
0.91156 0.91701 0.92704 0.87731 0.91897 0.87560 0.92787 0.92403
0.87903
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.07 8.37 37.16 0.31 -1.76 16
2 C 0.12 1.44 1.13 -90.63 -0.10 1.33 16
3 C -0.14 -1.39 8.85 37.16 0.33 -1.06 16
4 C -0.18 -2.18 8.37 37.15 0.31 -1.87 16
5 O -0.34 -5.31 9.88 -39.26 -0.39 -5.70 16
6 C 0.48 8.05 6.60 36.01 0.24 8.29 16
7 O -0.49 -8.70 12.01 -25.45 -0.31 -9.00 16
8 C 0.09 1.54 3.30 -27.73 -0.09 1.45 16
9 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16
10 C 0.10 2.11 5.89 -3.53 -0.02 2.09 16
11 N -0.64 -14.44 3.02 -173.93 -0.53 -14.97 16
12 C 0.56 15.49 7.62 -12.98 -0.10 15.39 16
13 O -0.57 -18.02 14.56 5.20 0.08 -17.95 16
14 C -0.54 -14.62 8.86 -35.63 -0.32 -14.93 16
15 H 0.07 1.79 5.73 -52.48 -0.30 1.49 16
16 C 0.09 2.35 5.50 -17.37 -0.10 2.26 16
17 N -0.77 -22.23 11.86 55.55 0.66 -21.57 16
18 Si 0.91 19.30 29.56 -169.99 -5.02 14.28 16
19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16
20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16
21 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16
22 C 0.08 1.53 6.55 -3.53 -0.02 1.51 16
23 C 0.05 0.75 6.99 37.31 0.26 1.01 16
24 O -0.37 -6.45 9.92 -55.11 -0.55 -7.00 16
25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
27 H 0.08 1.13 5.89 -51.93 -0.31 0.82 16
28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16
30 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16
31 H 0.08 1.17 5.89 -51.93 -0.31 0.86 16
32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16
35 H 0.10 2.28 7.12 -51.93 -0.37 1.91 16
36 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16
37 H 0.11 1.92 5.41 -51.93 -0.28 1.64 16
38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16
40 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16
LS Contribution 326.18 15.07 4.92 4.92
Total: -1.00 -33.85 326.18 -6.21 -40.06
By element:
Atomic # 1 Polarization: 8.99 SS G_CDS: -5.77 Total: 3.22 kcal
Atomic # 6 Polarization: 13.01 SS G_CDS: 0.70 Total: 13.71 kcal
Atomic # 7 Polarization: -36.67 SS G_CDS: 0.13 Total: -36.54 kcal
Atomic # 8 Polarization: -38.48 SS G_CDS: -1.16 Total: -39.65 kcal
Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal
Total LS contribution 4.92 Total: 4.92 kcal
Total: -33.85 -6.21 -40.06 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000613978637.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -118.581 kcal
(2) G-P(sol) polarization free energy of solvation -33.847 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.428 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal
(6) G-S(sol) free energy of system = (1) + (5) -158.637 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds