Wall clock time and date at job start Tue Mar 31 2020 02:34:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52999 * 109.46902 * 2 1
4 4 C 1.52990 * 109.47236 * 240.00066 * 2 1 3
5 5 O 1.45201 * 109.46888 * 119.99621 * 2 1 3
6 6 C 1.34232 * 116.99836 * 60.00629 * 5 2 1
7 7 O 1.20820 * 119.99933 * 359.97438 * 6 5 2
8 8 C 1.50699 * 119.99583 * 179.97438 * 6 5 2
9 9 H 1.08997 * 109.55567 * 55.12474 * 8 6 5
10 10 C 1.53299 * 109.51214 * 294.99615 * 8 6 5
11 11 N 1.47148 * 108.38314 * 187.77566 * 10 8 6
12 12 C 1.34780 * 120.98506 * 230.51292 * 11 10 8
13 13 O 1.21686 * 119.99713 * 355.23194 * 12 11 10
14 14 C 1.46376 * 120.00269 * 175.22934 * 12 11 10
15 15 H 1.08004 * 119.99586 * 7.88955 * 14 12 11
16 16 C 1.40044 * 120.00043 * 187.89277 * 14 12 11
17 17 N 1.30675 * 119.99954 * 359.97438 * 16 14 12
18 18 Si 1.86796 * 120.00099 * 180.02562 * 16 14 12
19 19 H 1.48494 * 109.47493 * 89.99565 * 18 16 14
20 20 H 1.48501 * 109.47037 * 210.00098 * 18 16 14
21 21 H 1.48505 * 109.47123 * 329.99317 * 18 16 14
22 22 C 1.47152 * 118.03618 * 50.54005 * 11 10 8
23 23 C 1.53301 * 108.38360 * 309.45944 * 22 11 10
24 24 O 1.42962 * 109.21814 * 52.30547 * 23 22 11
25 25 H 1.09000 * 109.47819 * 299.99826 * 1 2 3
26 26 H 1.08998 * 109.47526 * 60.00193 * 1 2 3
27 27 H 1.09003 * 109.46908 * 180.02562 * 1 2 3
28 28 H 1.08996 * 109.47418 * 179.97438 * 3 2 1
29 29 H 1.09007 * 109.47041 * 300.00069 * 3 2 1
30 30 H 1.09008 * 109.46998 * 59.99586 * 3 2 1
31 31 H 1.09004 * 109.47449 * 299.99975 * 4 2 1
32 32 H 1.09003 * 109.47373 * 60.00120 * 4 2 1
33 33 H 1.09005 * 109.47437 * 179.97438 * 4 2 1
34 34 H 1.09000 * 109.68103 * 307.49826 * 10 8 6
35 35 H 1.08998 * 109.68029 * 68.05529 * 10 8 6
36 36 H 0.97000 * 120.00030 * 180.02562 * 17 16 14
37 37 H 1.09005 * 109.68409 * 189.74318 * 22 11 10
38 38 H 1.08999 * 109.71888 * 69.20373 * 22 11 10
39 39 H 1.08996 * 109.51254 * 292.38264 * 23 22 11
40 40 H 1.09000 * 109.55508 * 172.25038 * 23 22 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2492
5 8 2.0139 -0.6844 1.1856
6 6 1.6533 -1.9684 1.3379
7 8 0.9560 -2.5025 0.5083
8 6 2.1182 -2.7436 2.5437
9 1 1.8297 -2.2138 3.4515
10 6 3.6434 -2.8919 2.5002
11 7 4.0517 -3.8057 3.5788
12 6 5.0300 -3.4672 4.4419
13 8 5.6489 -2.4314 4.2841
14 6 5.3481 -4.3454 5.5689
15 1 4.8906 -5.3213 5.6388
16 6 6.2453 -3.9202 6.5565
17 7 6.7991 -2.7396 6.4716
18 14 6.6517 -5.0412 7.9944
19 1 7.8213 -5.8876 7.6471
20 1 6.9731 -4.2183 9.1881
21 1 5.4835 -5.9087 8.2913
22 6 3.3608 -5.1005 3.6870
23 6 1.8494 -4.8446 3.6727
24 8 1.5188 -4.0415 2.5371
25 1 -0.3635 0.5138 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 3.1299 1.4426 0.0005
29 1 1.6765 1.9564 -0.8900
30 1 1.6765 1.9564 0.8900
31 1 1.6767 -1.7489 -1.2492
32 1 1.6767 -0.2074 -2.1392
33 1 3.1300 -0.7208 -1.2494
34 1 3.9449 -3.3031 1.5368
35 1 4.1112 -1.9184 2.6471
36 1 7.4208 -2.4452 7.1555
37 1 3.6414 -5.5895 4.6199
38 1 3.6338 -5.7346 2.8436
39 1 1.5599 -4.3224 4.5846
40 1 1.3190 -5.7950 3.6133
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000613978637.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:34:24
Heat of formation + Delta-G solvation = -181.262533 kcal
Electronic energy + Delta-G solvation = -23673.681395 eV
Core-core repulsion = 20067.290817 eV
Total energy + Delta-G solvation = -3606.390578 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.145 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-42.14198 -40.63827 -38.79076 -37.87402 -35.36219 -35.17680 -34.63576 -32.82993
-29.26641 -28.40190 -28.33864 -28.32133 -25.85793 -24.05453 -22.72441 -21.11671
-20.74489 -18.96254 -18.16929 -18.05161 -17.75674 -17.33286 -17.05422 -16.44276
-16.05619 -15.92580 -15.79070 -15.31606 -15.17366 -14.63268 -14.56981 -14.04390
-13.69696 -13.46639 -13.40319 -13.17883 -13.07312 -12.96888 -12.91377 -12.77940
-12.72353 -12.47313 -12.18926 -12.16153 -11.99604 -11.74827 -11.45814 -11.22344
-11.03205 -10.93430 -9.85625 -9.22758 -8.31805 -6.87057 0.94248 1.20623
1.42859 1.43509 1.59020 2.20477 2.42730 2.51025 2.94328 3.43893
3.55341 3.61603 3.71251 3.73924 3.79105 3.91852 4.11835 4.28877
4.31366 4.52803 4.56906 4.58845 4.60701 4.73803 4.75098 4.77668
4.84301 4.84574 4.98494 5.09015 5.23771 5.24801 5.36893 5.40780
5.60601 5.84988 6.03421 6.23110 6.66446 6.85740 7.29904 8.38838
8.63748
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.026922 B = 0.004239 C = 0.003825
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1039.795329 B = 6603.876543 C = 7317.794813
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.101 3.899
3 C -0.138 4.138
4 C -0.181 4.181
5 O -0.354 6.354
6 C 0.484 3.516
7 O -0.498 6.498
8 C 0.095 3.905
9 H 0.098 0.902
10 C 0.108 3.892
11 N -0.647 5.647
12 C 0.542 3.458
13 O -0.626 6.626
14 C -0.565 4.565
15 H 0.100 0.900
16 C 0.030 3.970
17 N -0.821 5.821
18 Si 0.997 3.003
19 H -0.265 1.265
20 H -0.275 1.275
21 H -0.243 1.243
22 C 0.079 3.921
23 C 0.052 3.948
24 O -0.371 6.371
25 H 0.064 0.936
26 H 0.099 0.901
27 H 0.061 0.939
28 H 0.062 0.938
29 H 0.108 0.892
30 H 0.068 0.932
31 H 0.060 0.940
32 H 0.099 0.901
33 H 0.059 0.941
34 H 0.058 0.942
35 H 0.079 0.921
36 H 0.275 0.725
37 H 0.108 0.892
38 H 0.067 0.933
39 H 0.060 0.940
40 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.148 1.184 -8.554 14.905
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C 0.066 3.934
3 C -0.194 4.194
4 C -0.238 4.238
5 O -0.272 6.272
6 C 0.326 3.674
7 O -0.385 6.385
8 C 0.034 3.966
9 H 0.116 0.884
10 C -0.016 4.016
11 N -0.385 5.385
12 C 0.350 3.650
13 O -0.513 6.513
14 C -0.601 4.601
15 H 0.118 0.882
16 C -0.185 4.185
17 N -0.451 5.451
18 Si 0.816 3.184
19 H -0.189 1.189
20 H -0.200 1.200
21 H -0.166 1.166
22 C -0.044 4.044
23 C -0.024 4.024
24 O -0.290 6.290
25 H 0.083 0.917
26 H 0.117 0.883
27 H 0.080 0.920
28 H 0.082 0.918
29 H 0.127 0.873
30 H 0.087 0.913
31 H 0.079 0.921
32 H 0.118 0.882
33 H 0.078 0.922
34 H 0.077 0.923
35 H 0.097 0.903
36 H 0.085 0.915
37 H 0.126 0.874
38 H 0.085 0.915
39 H 0.078 0.922
40 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -12.037 1.690 -9.008 15.129
hybrid contribution 0.610 -0.155 0.630 0.891
sum -11.427 1.535 -8.377 14.252
Atomic orbital electron populations
1.22456 0.93119 1.03703 1.04214 1.22682 0.95317 0.93362 0.82017
1.21904 1.02220 0.90812 1.04505 1.22477 1.01681 1.02102 0.97532
1.86578 1.69801 1.24031 1.46773 1.22742 0.77226 0.81114 0.86343
1.90548 1.35046 1.70232 1.42697 1.21676 0.93577 0.86097 0.95205
0.88429 1.21537 0.91740 0.96764 0.91599 1.48209 1.39925 1.18494
1.31908 1.18761 0.78148 0.86076 0.82054 1.90557 1.54335 1.30010
1.76404 1.21468 1.28295 1.03674 1.06634 0.88207 1.26995 0.93335
0.96419 1.01787 1.70176 1.22194 1.19839 1.32863 0.85021 0.79862
0.77898 0.75596 1.18939 1.20042 1.16560 1.22421 0.92381 0.85477
1.04081 1.23345 0.94868 0.96565 0.87635 1.87916 1.70526 1.24263
1.46248 0.91654 0.88274 0.92040 0.91848 0.87334 0.91273 0.92053
0.88185 0.92238 0.92350 0.90289 0.91498 0.87385 0.91475 0.92170
0.83664
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.75 8.37 71.98 0.60 -3.14 16
2 C 0.10 2.40 1.13 -10.80 -0.01 2.39 16
3 C -0.14 -2.48 8.85 71.98 0.64 -1.84 16
4 C -0.18 -4.10 8.37 71.98 0.60 -3.50 16
5 O -0.35 -11.08 9.88 -51.43 -0.51 -11.58 16
6 C 0.48 16.36 6.60 71.24 0.47 16.83 16
7 O -0.50 -17.64 12.01 28.39 0.34 -17.30 16
8 C 0.09 3.37 3.30 29.95 0.10 3.47 16
9 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16
10 C 0.11 4.50 5.89 86.36 0.51 5.01 16
11 N -0.65 -29.49 3.02 -822.42 -2.48 -31.98 16
12 C 0.54 30.92 7.62 86.36 0.66 31.58 16
13 O -0.63 -41.49 14.56 -4.30 -0.06 -41.56 16
14 C -0.56 -30.49 8.86 24.83 0.22 -30.27 16
15 H 0.10 4.68 5.73 -2.91 -0.02 4.66 16
16 C 0.03 1.61 5.50 85.30 0.47 2.08 16
17 N -0.82 -49.05 11.86 21.83 0.26 -48.79 16
18 Si 1.00 39.08 29.56 68.60 2.03 41.11 16
19 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16
20 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16
21 H -0.24 -8.60 7.11 99.48 0.71 -7.89 16
22 C 0.08 2.76 6.55 86.36 0.57 3.32 16
23 C 0.05 1.50 6.99 72.08 0.50 2.00 16
24 O -0.37 -12.58 9.92 -129.97 -1.29 -13.87 16
25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16
26 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16
27 H 0.06 1.60 5.89 -2.39 -0.01 1.58 16
28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
29 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16
30 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16
31 H 0.06 1.69 5.89 -2.38 -0.01 1.67 16
32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16
33 H 0.06 1.38 8.14 -2.38 -0.02 1.37 16
34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16
35 H 0.08 3.68 7.12 -2.39 -0.02 3.66 16
36 H 0.28 14.90 8.29 -92.71 -0.77 14.13 16
37 H 0.11 3.70 5.41 -2.38 -0.01 3.69 16
38 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16
39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
40 H 0.15 2.98 8.14 -2.39 -0.02 2.96 16
Total: -1.00 -76.40 326.18 4.65 -71.75
By element:
Atomic # 1 Polarization: 23.25 SS G_CDS: 1.04 Total: 24.30 kcal
Atomic # 6 Polarization: 22.60 SS G_CDS: 5.32 Total: 27.92 kcal
Atomic # 7 Polarization: -78.54 SS G_CDS: -2.22 Total: -80.77 kcal
Atomic # 8 Polarization: -82.79 SS G_CDS: -1.52 Total: -84.31 kcal
Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal
Total: -76.40 4.65 -71.75 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000613978637.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -109.513 kcal
(2) G-P(sol) polarization free energy of solvation -76.402 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.915 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.750 kcal
(6) G-S(sol) free energy of system = (1) + (5) -181.263 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds