Wall clock time and date at job start Tue Mar 31 2020 02:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86804 * 119.99946 * 2 1 4 4 H 1.48502 * 109.47148 * 239.99995 * 3 2 1 5 5 H 1.48500 * 109.47139 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47045 * 119.99959 * 3 2 1 7 7 C 1.38950 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99659 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99494 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00474 * 0.02562 * 10 9 7 12 12 C 1.50710 * 119.99400 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.46593 * 180.02562 * 12 10 9 14 14 C 1.34227 * 116.99584 * 180.02562 * 13 12 10 15 15 O 1.20829 * 120.00177 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00180 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47423 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46965 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.48254 * 304.99965 * 18 17 16 20 20 C 1.53098 * 109.47924 * 184.97536 * 18 17 16 21 21 C 1.53173 * 109.16229 * 182.39751 * 20 18 17 22 22 C 1.53171 * 109.03669 * 56.98045 * 21 20 18 23 23 C 1.53090 * 109.16805 * 303.01726 * 22 21 20 24 24 O 1.42901 * 109.48873 * 65.02809 * 18 17 16 25 25 H 0.97001 * 119.99767 * 0.02562 * 1 2 3 26 26 H 0.96993 * 119.99977 * 0.02562 * 9 7 2 27 27 H 1.08994 * 109.47013 * 60.00775 * 12 10 9 28 28 H 1.08999 * 109.47134 * 299.99906 * 12 10 9 29 29 H 1.09007 * 109.47169 * 59.99602 * 16 14 13 30 30 H 1.09003 * 109.47012 * 300.00470 * 16 14 13 31 31 H 1.09001 * 109.47130 * 60.00410 * 17 16 14 32 32 H 1.08994 * 109.46905 * 299.99654 * 17 16 14 33 33 H 1.08999 * 109.51953 * 302.30753 * 20 18 17 34 34 H 1.09009 * 109.51672 * 62.43170 * 20 18 17 35 35 H 1.08994 * 109.54460 * 176.85324 * 21 20 18 36 36 H 1.09009 * 109.54146 * 297.11538 * 21 20 18 37 37 H 1.09002 * 109.51983 * 62.92805 * 22 21 20 38 38 H 1.09007 * 109.52498 * 183.04603 * 22 21 20 39 39 H 1.09000 * 109.48489 * 177.58764 * 23 22 21 40 40 H 1.08993 * 109.48419 * 297.61659 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 8 2.1874 -5.9665 -0.0027 14 6 1.6744 -7.2069 -0.0037 15 8 0.4765 -7.3652 -0.0038 16 6 2.5923 -8.4020 -0.0049 17 6 1.7591 -9.6852 -0.0054 18 6 2.6912 -10.8985 -0.0059 19 1 3.3800 -10.8274 -0.8477 20 6 1.8619 -12.1793 -0.1315 21 6 2.7964 -13.3914 -0.0711 22 6 3.5951 -13.3418 1.2350 23 6 4.3575 -12.0162 1.3079 24 8 3.4327 -10.9306 1.2153 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 -0.0005 27 1 0.6169 -4.9201 -0.8920 28 1 0.6175 -4.9213 0.8880 29 1 3.2213 -8.3780 0.8851 30 1 3.2211 -8.3763 -0.8949 31 1 1.1299 -9.7095 -0.8951 32 1 1.1307 -9.7106 0.8849 33 1 1.1449 -12.2308 0.6879 34 1 1.3288 -12.1762 -1.0824 35 1 2.2075 -14.3079 -0.1038 36 1 3.4815 -13.3662 -0.9186 37 1 2.9132 -13.4169 2.0820 38 1 4.3017 -14.1714 1.2617 39 1 4.8938 -11.9569 2.2550 40 1 5.0682 -11.9597 0.4835 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732385408.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:45 Heat of formation + Delta-G solvation = -192.199992 kcal Electronic energy + Delta-G solvation = -21826.799507 eV Core-core repulsion = 18219.934646 eV Total energy + Delta-G solvation = -3606.864862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.34702 -39.65590 -38.11432 -36.14823 -34.24100 -33.97278 -33.93103 -31.36263 -30.61779 -28.39557 -26.17207 -24.64471 -24.11841 -22.17845 -20.69264 -20.26022 -19.53699 -18.04110 -17.52958 -16.92190 -16.36148 -16.27153 -16.08907 -15.38017 -14.97519 -14.81532 -14.47144 -14.42264 -14.05359 -13.89041 -13.36161 -13.08515 -12.92305 -12.40223 -12.22669 -12.17116 -11.84077 -11.59983 -11.52167 -11.48272 -11.17643 -11.09363 -11.02166 -10.58964 -10.47339 -10.34373 -10.33802 -10.24180 -9.72283 -9.57288 -8.48778 -8.05880 -6.47622 -3.89638 2.40727 2.80154 3.17267 3.24164 3.29209 3.47686 3.77006 4.12929 4.33291 4.42603 4.49380 4.56118 4.67833 4.82093 4.95760 4.97764 5.02934 5.14748 5.17681 5.24912 5.29269 5.39394 5.43912 5.51654 5.56991 5.64657 5.66390 5.71878 5.74154 5.82382 5.92995 6.03683 6.09771 6.72699 6.96208 7.49745 7.90677 8.01465 8.51493 9.09411 9.42079 9.92372 10.69592 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.053295 B = 0.002333 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.251355 B =11996.648261 C =12368.465275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.105 0.895 9 N -0.554 5.554 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.060 3.940 13 O -0.327 6.327 14 C 0.458 3.542 15 O -0.519 6.519 16 C -0.110 4.110 17 C -0.100 4.100 18 C 0.090 3.910 19 H 0.062 0.938 20 C -0.151 4.151 21 C -0.123 4.123 22 C -0.158 4.158 23 C 0.061 3.939 24 O -0.377 6.377 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 -24.827 -0.177 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.191 5.191 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.017 4.017 13 O -0.241 6.241 14 C 0.301 3.699 15 O -0.408 6.408 16 C -0.148 4.148 17 C -0.137 4.137 18 C 0.033 3.967 19 H 0.079 0.921 20 C -0.188 4.188 21 C -0.160 4.160 22 C -0.196 4.196 23 C -0.016 4.016 24 O -0.296 6.296 25 H 0.084 0.916 26 H 0.228 0.772 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.508 -24.523 -0.033 24.772 hybrid contribution -0.407 0.622 -0.196 0.768 sum 3.101 -23.901 -0.229 24.102 Atomic orbital electron populations 1.69608 1.05989 1.28551 1.49696 1.25315 0.95696 0.99863 0.96936 0.85852 0.78734 0.80071 0.79183 1.19771 1.20893 1.19755 1.19677 0.93451 0.81797 1.48236 0.87682 1.41703 1.09362 1.04099 1.63929 1.19355 0.88343 0.84121 0.85849 1.90558 1.13446 1.86818 1.55188 1.22726 0.90896 0.84706 1.03411 1.86561 1.40350 1.14347 1.82879 1.23822 0.88759 0.85026 0.72281 1.90642 1.17067 1.86912 1.46189 1.21329 0.97975 0.89025 1.06467 1.21460 0.97016 0.90598 1.04657 1.22137 0.92900 0.94396 0.87310 0.92051 1.22201 0.98789 0.94656 1.03201 1.21588 0.98494 0.98342 0.97617 1.22204 1.00217 0.98441 0.98691 1.22556 0.91010 0.85884 1.02177 1.87970 1.54802 1.48311 1.38505 0.91600 0.77157 0.89621 0.89606 0.86862 0.87784 0.89489 0.89971 0.90798 0.90672 0.91484 0.91819 0.91026 0.91010 0.88836 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 8 H 0.11 3.05 7.16 -52.49 -0.38 2.68 16 9 N -0.55 -14.25 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.82 7.86 -10.98 -0.09 10.74 16 11 O -0.58 -16.34 16.08 -14.11 -0.23 -16.57 16 12 C 0.06 1.18 5.94 36.01 0.21 1.40 16 13 O -0.33 -6.28 9.76 -45.89 -0.45 -6.73 16 14 C 0.46 7.30 7.96 36.01 0.29 7.59 16 15 O -0.52 -9.13 15.73 -18.75 -0.29 -9.42 16 16 C -0.11 -1.27 5.71 -27.88 -0.16 -1.43 16 17 C -0.10 -1.00 4.21 -26.73 -0.11 -1.11 16 18 C 0.09 0.77 2.64 -26.68 -0.07 0.70 16 19 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 20 C -0.15 -1.09 5.42 -26.59 -0.14 -1.23 16 21 C -0.12 -0.75 6.03 -26.55 -0.16 -0.91 16 22 C -0.16 -0.98 6.14 -26.60 -0.16 -1.14 16 23 C 0.06 0.44 6.84 37.20 0.25 0.70 16 24 O -0.38 -3.75 9.94 -35.23 -0.35 -4.10 16 25 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 27 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 28 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 29 H 0.11 1.29 7.82 -51.93 -0.41 0.88 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -32.97 339.72 -7.09 -40.06 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.15 Total: 6.43 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -0.38 Total: 7.24 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.67 Total: -37.91 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -1.32 Total: -36.82 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.97 -7.09 -40.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732385408.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.141 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds