Wall clock time and date at job start Tue Mar 31 2020 02:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86804 * 119.99946 * 2 1 4 4 H 1.48502 * 109.47148 * 239.99995 * 3 2 1 5 5 H 1.48500 * 109.47139 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47045 * 119.99959 * 3 2 1 7 7 C 1.38950 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99659 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99494 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00474 * 0.02562 * 10 9 7 12 12 C 1.50710 * 119.99400 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.46593 * 180.02562 * 12 10 9 14 14 C 1.34227 * 116.99584 * 180.02562 * 13 12 10 15 15 O 1.20829 * 120.00177 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00180 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47423 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46965 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.48254 * 304.99965 * 18 17 16 20 20 C 1.53098 * 109.47924 * 184.97536 * 18 17 16 21 21 C 1.53173 * 109.16229 * 182.39751 * 20 18 17 22 22 C 1.53171 * 109.03669 * 56.98045 * 21 20 18 23 23 C 1.53090 * 109.16805 * 303.01726 * 22 21 20 24 24 O 1.42901 * 109.48873 * 65.02809 * 18 17 16 25 25 H 0.97001 * 119.99767 * 0.02562 * 1 2 3 26 26 H 0.96993 * 119.99977 * 0.02562 * 9 7 2 27 27 H 1.08994 * 109.47013 * 60.00775 * 12 10 9 28 28 H 1.08999 * 109.47134 * 299.99906 * 12 10 9 29 29 H 1.09007 * 109.47169 * 59.99602 * 16 14 13 30 30 H 1.09003 * 109.47012 * 300.00470 * 16 14 13 31 31 H 1.09001 * 109.47130 * 60.00410 * 17 16 14 32 32 H 1.08994 * 109.46905 * 299.99654 * 17 16 14 33 33 H 1.08999 * 109.51953 * 302.30753 * 20 18 17 34 34 H 1.09009 * 109.51672 * 62.43170 * 20 18 17 35 35 H 1.08994 * 109.54460 * 176.85324 * 21 20 18 36 36 H 1.09009 * 109.54146 * 297.11538 * 21 20 18 37 37 H 1.09002 * 109.51983 * 62.92805 * 22 21 20 38 38 H 1.09007 * 109.52498 * 183.04603 * 22 21 20 39 39 H 1.09000 * 109.48489 * 177.58764 * 23 22 21 40 40 H 1.08993 * 109.48419 * 297.61659 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 8 2.1874 -5.9665 -0.0027 14 6 1.6744 -7.2069 -0.0037 15 8 0.4765 -7.3652 -0.0038 16 6 2.5923 -8.4020 -0.0049 17 6 1.7591 -9.6852 -0.0054 18 6 2.6912 -10.8985 -0.0059 19 1 3.3800 -10.8274 -0.8477 20 6 1.8619 -12.1793 -0.1315 21 6 2.7964 -13.3914 -0.0711 22 6 3.5951 -13.3418 1.2350 23 6 4.3575 -12.0162 1.3079 24 8 3.4327 -10.9306 1.2153 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 -0.0005 27 1 0.6169 -4.9201 -0.8920 28 1 0.6175 -4.9213 0.8880 29 1 3.2213 -8.3780 0.8851 30 1 3.2211 -8.3763 -0.8949 31 1 1.1299 -9.7095 -0.8951 32 1 1.1307 -9.7106 0.8849 33 1 1.1449 -12.2308 0.6879 34 1 1.3288 -12.1762 -1.0824 35 1 2.2075 -14.3079 -0.1038 36 1 3.4815 -13.3662 -0.9186 37 1 2.9132 -13.4169 2.0820 38 1 4.3017 -14.1714 1.2617 39 1 4.8938 -11.9569 2.2550 40 1 5.0682 -11.9597 0.4835 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732385408.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:45 Heat of formation + Delta-G solvation = -212.942454 kcal Electronic energy + Delta-G solvation = -21827.698968 eV Core-core repulsion = 18219.934646 eV Total energy + Delta-G solvation = -3607.764323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67684 -40.38051 -39.99833 -37.60067 -36.04242 -35.05475 -34.51146 -33.42829 -31.44064 -29.95594 -27.17852 -26.32866 -24.84654 -23.03097 -21.58006 -21.42835 -21.08225 -20.08221 -18.84087 -17.97327 -17.86406 -17.30487 -17.26309 -16.74614 -16.30419 -15.93998 -15.77412 -15.55365 -15.31305 -14.72863 -14.60990 -14.56487 -13.72500 -13.68140 -13.56508 -13.52631 -13.00497 -12.93309 -12.87261 -12.49581 -12.21846 -12.12872 -12.08467 -11.89103 -11.81214 -11.66666 -11.57794 -11.52498 -11.15826 -10.52444 -10.32096 -10.13016 -8.52855 -6.03847 1.13278 1.37480 1.38490 1.46593 1.57194 1.86255 2.29889 2.86225 3.04824 3.12410 3.62768 3.67807 3.91447 3.97944 4.02460 4.07959 4.10518 4.16139 4.21310 4.31433 4.35694 4.43625 4.58374 4.64847 4.76845 4.89117 4.95146 4.96168 5.11071 5.14319 5.18905 5.25312 5.35397 5.39848 5.43575 5.88120 6.36005 6.45135 6.66758 7.01827 7.38704 7.92312 8.63918 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.053295 B = 0.002333 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.251355 B =11996.648261 C =12368.465275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.085 0.915 9 N -0.558 5.558 10 C 0.435 3.565 11 O -0.618 6.618 12 C 0.070 3.930 13 O -0.347 6.347 14 C 0.458 3.542 15 O -0.536 6.536 16 C -0.103 4.103 17 C -0.095 4.095 18 C 0.091 3.909 19 H 0.075 0.925 20 C -0.150 4.150 21 C -0.122 4.122 22 C -0.156 4.156 23 C 0.053 3.947 24 O -0.401 6.401 25 H 0.281 0.719 26 H 0.400 0.600 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 -25.634 -0.648 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.102 0.898 9 N -0.195 5.195 10 C 0.222 3.778 11 O -0.505 6.505 12 C -0.007 4.007 13 O -0.263 6.263 14 C 0.303 3.697 15 O -0.426 6.426 16 C -0.140 4.140 17 C -0.132 4.132 18 C 0.034 3.966 19 H 0.092 0.908 20 C -0.188 4.188 21 C -0.160 4.160 22 C -0.194 4.194 23 C -0.023 4.023 24 O -0.321 6.321 25 H 0.091 0.909 26 H 0.234 0.766 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.643 -25.355 -0.503 25.620 hybrid contribution -0.480 0.815 -0.034 0.947 sum 3.164 -24.539 -0.537 24.748 Atomic orbital electron populations 1.69669 1.06967 1.29826 1.49049 1.26159 0.96624 1.02663 0.95609 0.84894 0.77725 0.75990 0.79164 1.19426 1.19345 1.19476 1.19695 0.92964 0.83390 1.50813 0.89752 1.41748 1.09559 1.04215 1.64006 1.20139 0.88090 0.85437 0.84119 1.90520 1.15482 1.87723 1.56804 1.22496 0.90254 0.82715 1.05209 1.86573 1.40859 1.15322 1.83506 1.24663 0.89242 0.84649 0.71152 1.90630 1.18057 1.86846 1.47051 1.21481 0.97547 0.87373 1.07595 1.21441 0.97063 0.90545 1.04179 1.22151 0.92960 0.94120 0.87379 0.90752 1.22195 0.98733 0.94559 1.03315 1.21607 0.98492 0.98064 0.97809 1.22191 1.00310 0.98403 0.98448 1.22734 0.90926 0.85726 1.02892 1.87931 1.55475 1.49539 1.39196 0.90929 0.76560 0.87570 0.87837 0.86549 0.85554 0.88930 0.91538 0.91867 0.89666 0.90658 0.90987 0.91940 0.89408 0.88360 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.02 13.05 21.66 0.28 -48.73 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 1.00 42.31 29.55 68.60 2.03 44.34 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.34 -19.30 9.68 84.04 0.81 -18.48 16 8 H 0.08 5.06 7.16 -2.91 -0.02 5.04 16 9 N -0.56 -29.14 5.29 -306.98 -1.62 -30.76 16 10 C 0.44 21.78 7.86 87.66 0.69 22.47 16 11 O -0.62 -35.91 16.08 15.74 0.25 -35.66 16 12 C 0.07 2.74 5.94 71.24 0.42 3.17 16 13 O -0.35 -13.17 9.76 -45.03 -0.44 -13.61 16 14 C 0.46 14.20 7.96 71.24 0.57 14.77 16 15 O -0.54 -18.37 15.73 21.96 0.35 -18.02 16 16 C -0.10 -2.23 5.71 29.85 0.17 -2.06 16 17 C -0.09 -1.79 4.21 30.60 0.13 -1.66 16 18 C 0.09 1.42 2.64 30.63 0.08 1.50 16 19 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 20 C -0.15 -1.94 5.42 30.68 0.17 -1.77 16 21 C -0.12 -1.25 6.03 30.71 0.19 -1.07 16 22 C -0.16 -1.67 6.14 30.68 0.19 -1.48 16 23 C 0.05 0.70 6.84 72.01 0.49 1.19 16 24 O -0.40 -7.54 9.94 -148.98 -1.48 -9.02 16 25 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 26 H 0.40 19.67 7.90 -92.71 -0.73 18.93 16 27 H 0.11 3.69 8.13 -2.39 -0.02 3.67 16 28 H 0.10 3.65 8.13 -2.39 -0.02 3.63 16 29 H 0.12 2.52 7.82 -2.38 -0.02 2.50 16 30 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.09 1.63 8.10 -2.39 -0.02 1.61 16 32 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -70.57 339.72 4.04 -66.52 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.31 Total: 28.43 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 4.37 Total: 16.51 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.34 Total: -79.50 kcal Atomic # 8 Polarization: -74.99 SS G_CDS: -1.32 Total: -76.31 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -70.57 4.04 -66.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732385408.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.419 kcal (2) G-P(sol) polarization free energy of solvation -70.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds