Wall clock time and date at job start Tue Mar 31 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00159 * 2 1 4 4 H 1.48497 * 109.47555 * 270.00408 * 3 2 1 5 5 H 1.48509 * 109.46874 * 30.00499 * 3 2 1 6 6 H 1.48500 * 109.46870 * 149.99757 * 3 2 1 7 7 C 1.38956 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00122 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00341 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99556 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00458 * 179.97438 * 10 9 7 13 13 O 1.45194 * 109.47227 * 179.97438 * 12 10 9 14 14 C 1.34237 * 117.00088 * 180.02562 * 13 12 10 15 15 O 1.20824 * 119.99887 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00112 * 180.02562 * 14 13 12 17 17 C 1.52991 * 109.46929 * 186.28573 * 16 14 13 18 18 O 1.42904 * 109.47277 * 302.82662 * 17 16 14 19 19 C 1.53001 * 109.47614 * 62.82991 * 17 16 14 20 20 C 1.53001 * 109.47238 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47108 * 300.00144 * 20 19 17 22 22 C 1.53001 * 109.47189 * 59.99826 * 21 20 19 23 23 C 1.53001 * 109.47238 * 300.00094 * 22 21 20 24 24 H 0.96993 * 120.00147 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99920 * 359.97438 * 9 7 2 26 26 H 1.09007 * 109.46793 * 60.00089 * 12 10 9 27 27 H 1.08994 * 109.47078 * 300.00454 * 12 10 9 28 28 H 1.09001 * 109.47331 * 66.28238 * 16 14 13 29 29 H 1.09000 * 109.46738 * 306.28530 * 16 14 13 30 30 H 0.96694 * 113.99997 * 300.00966 * 18 17 16 31 31 H 1.09004 * 109.46741 * 60.00217 * 19 17 16 32 32 H 1.09001 * 109.47034 * 300.00381 * 19 17 16 33 33 H 1.08996 * 109.47127 * 180.02562 * 20 19 17 34 34 H 1.08996 * 109.47231 * 60.00174 * 20 19 17 35 35 H 1.08995 * 109.46904 * 180.02562 * 21 20 19 36 36 H 1.09000 * 109.46736 * 299.99787 * 21 20 19 37 37 H 1.09004 * 109.46741 * 59.99865 * 22 21 20 38 38 H 1.09001 * 109.47034 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.47231 * 299.99826 * 23 22 21 40 40 H 1.08993 * 109.46630 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4400 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 8 2.1872 -5.9666 -0.0007 14 6 1.6742 -7.2070 -0.0008 15 8 0.4763 -7.3653 -0.0008 16 6 2.5922 -8.4022 -0.0010 17 6 1.7658 -9.6799 -0.1590 18 8 0.7988 -9.7547 0.8905 19 6 1.0502 -9.6607 -1.5113 20 6 0.2243 -10.9389 -1.6696 21 6 1.1492 -12.1557 -1.5992 22 6 1.8647 -12.1750 -0.2469 23 6 2.6906 -10.8968 -0.0887 24 1 -0.4850 0.8400 0.0004 25 1 0.3533 -2.3907 0.0002 26 1 0.6167 -4.9209 -0.8898 27 1 0.6174 -4.9205 0.8902 28 1 3.1414 -8.4387 0.9399 29 1 3.2958 -8.3197 -0.8294 30 1 1.1821 -9.7707 1.7780 31 1 1.7879 -9.6037 -2.3118 32 1 0.3918 -8.7935 -1.5616 33 1 -0.2851 -10.9253 -2.6331 34 1 -0.5132 -10.9963 -0.8691 35 1 0.5608 -13.0662 -1.7124 36 1 1.8867 -12.0982 -2.3997 37 1 1.1271 -12.2324 0.5536 38 1 2.5232 -13.0421 -0.1966 39 1 3.4282 -10.8393 -0.8891 40 1 3.1999 -10.9104 0.8749 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734198713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:30 Heat of formation + Delta-G solvation = -193.097837 kcal Electronic energy + Delta-G solvation = -22694.368357 eV Core-core repulsion = 19087.464562 eV Total energy + Delta-G solvation = -3606.903795 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68493 -39.26323 -38.02321 -36.00356 -35.18516 -33.98701 -32.01691 -31.36233 -30.99355 -28.78059 -27.24509 -24.57574 -22.99764 -22.24473 -20.47551 -19.97045 -19.54494 -18.05366 -17.48183 -16.70920 -16.43623 -16.06502 -15.65714 -15.24785 -15.02265 -14.57032 -14.46163 -14.10827 -13.90411 -13.67898 -13.13146 -12.89694 -12.57688 -12.48238 -12.21546 -11.98266 -11.81331 -11.72728 -11.61442 -11.27188 -11.13007 -10.94241 -10.69126 -10.43851 -10.36073 -10.30157 -10.28295 -10.22326 -9.75522 -9.59753 -8.50389 -8.07470 -6.49230 -3.91278 2.42556 2.76079 3.13680 3.23640 3.29882 3.75311 4.05020 4.14474 4.33242 4.40673 4.53625 4.73951 4.83313 4.94485 5.01280 5.15976 5.17479 5.23594 5.32197 5.33983 5.37313 5.42622 5.56464 5.62888 5.69254 5.73347 5.83446 5.93527 5.97045 6.06944 6.08186 6.21599 6.31499 6.75760 7.48390 7.58370 7.91428 8.03988 8.49823 9.07935 9.40565 9.90682 10.68099 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.050574 B = 0.002775 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.511518 B =10086.830047 C =10298.528795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.438 3.562 11 O -0.577 6.577 12 C 0.062 3.938 13 O -0.331 6.331 14 C 0.454 3.546 15 O -0.490 6.490 16 C -0.144 4.144 17 C 0.150 3.850 18 O -0.535 6.535 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.144 4.144 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.368 0.632 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.637 -22.154 -0.847 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.223 3.777 11 O -0.461 6.461 12 C -0.016 4.016 13 O -0.246 6.246 14 C 0.295 3.705 15 O -0.377 6.377 16 C -0.182 4.182 17 C 0.109 3.891 18 O -0.340 6.340 19 C -0.152 4.152 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.151 4.151 23 C -0.182 4.182 24 H 0.084 0.916 25 H 0.228 0.772 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.214 0.786 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.531 -21.994 -1.358 22.089 hybrid contribution 0.108 0.972 0.476 1.088 sum 1.639 -21.022 -0.882 21.104 Atomic orbital electron populations 1.69613 1.06003 1.28477 1.49713 1.25316 0.95687 0.99867 0.96924 0.85798 0.79222 0.80430 0.78493 1.20261 1.20807 1.19288 1.19724 0.93464 0.81787 1.48170 0.87644 1.41715 1.09376 1.04116 1.63866 1.19360 0.88336 0.84137 0.85841 1.90555 1.13464 1.86846 1.55275 1.22690 0.90860 0.84654 1.03360 1.86551 1.40472 1.14380 1.83246 1.23477 0.88880 0.84647 0.73450 1.90683 1.16399 1.86396 1.44242 1.22207 0.98675 0.90914 1.06407 1.20940 0.88001 0.90312 0.89840 1.86706 1.34529 1.96507 1.16218 1.21683 0.99942 1.00106 0.93491 1.21418 0.98214 0.93579 1.01844 1.21561 0.98726 0.98282 0.97216 1.21426 0.99032 0.96395 0.98245 1.22215 0.98183 0.95136 1.02638 0.91629 0.77156 0.89707 0.89665 0.87471 0.87065 0.78581 0.91214 0.89536 0.92290 0.90953 0.92198 0.92291 0.91227 0.92206 0.90789 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 8 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.55 -14.17 5.29 -10.96 -0.06 -14.23 16 10 C 0.44 10.73 7.86 -10.99 -0.09 10.64 16 11 O -0.58 -16.22 16.08 -14.12 -0.23 -16.45 16 12 C 0.06 1.21 5.94 36.00 0.21 1.42 16 13 O -0.33 -6.21 9.75 -45.92 -0.45 -6.66 16 14 C 0.45 7.00 7.44 36.01 0.27 7.27 16 15 O -0.49 -8.48 12.96 -25.69 -0.33 -8.81 16 16 C -0.14 -1.52 5.05 -27.89 -0.14 -1.66 16 17 C 0.15 1.47 0.56 -90.62 -0.05 1.42 16 18 O -0.54 -5.94 10.19 -55.94 -0.57 -6.51 16 19 C -0.11 -1.25 4.66 -26.73 -0.12 -1.37 16 20 C -0.11 -1.10 5.78 -26.73 -0.15 -1.25 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.11 -0.84 5.78 -26.73 -0.15 -0.99 16 23 C -0.14 -1.05 4.92 -26.73 -0.13 -1.18 16 24 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 26 H 0.08 1.51 8.13 -51.93 -0.42 1.09 16 27 H 0.09 1.53 8.13 -51.93 -0.42 1.10 16 28 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.37 2.83 9.05 45.56 0.41 3.24 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.19 6.00 -51.93 -0.31 0.88 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.56 7.68 -51.93 -0.40 0.17 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 330.60 15.07 4.98 4.98 Total: -1.00 -33.39 330.60 -6.89 -40.28 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.18 Total: 9.97 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.76 Total: 5.18 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.67 Total: -37.77 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.58 Total: -38.43 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.39 -6.89 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734198713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.817 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds