Wall clock time and date at job start Tue Mar 31 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00159 * 2 1 4 4 H 1.48497 * 109.47555 * 270.00408 * 3 2 1 5 5 H 1.48509 * 109.46874 * 30.00499 * 3 2 1 6 6 H 1.48500 * 109.46870 * 149.99757 * 3 2 1 7 7 C 1.38956 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00122 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00341 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99556 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00458 * 179.97438 * 10 9 7 13 13 O 1.45194 * 109.47227 * 179.97438 * 12 10 9 14 14 C 1.34237 * 117.00088 * 180.02562 * 13 12 10 15 15 O 1.20824 * 119.99887 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00112 * 180.02562 * 14 13 12 17 17 C 1.52991 * 109.46929 * 186.28573 * 16 14 13 18 18 O 1.42904 * 109.47277 * 302.82662 * 17 16 14 19 19 C 1.53001 * 109.47614 * 62.82991 * 17 16 14 20 20 C 1.53001 * 109.47238 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47108 * 300.00144 * 20 19 17 22 22 C 1.53001 * 109.47189 * 59.99826 * 21 20 19 23 23 C 1.53001 * 109.47238 * 300.00094 * 22 21 20 24 24 H 0.96993 * 120.00147 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99920 * 359.97438 * 9 7 2 26 26 H 1.09007 * 109.46793 * 60.00089 * 12 10 9 27 27 H 1.08994 * 109.47078 * 300.00454 * 12 10 9 28 28 H 1.09001 * 109.47331 * 66.28238 * 16 14 13 29 29 H 1.09000 * 109.46738 * 306.28530 * 16 14 13 30 30 H 0.96694 * 113.99997 * 300.00966 * 18 17 16 31 31 H 1.09004 * 109.46741 * 60.00217 * 19 17 16 32 32 H 1.09001 * 109.47034 * 300.00381 * 19 17 16 33 33 H 1.08996 * 109.47127 * 180.02562 * 20 19 17 34 34 H 1.08996 * 109.47231 * 60.00174 * 20 19 17 35 35 H 1.08995 * 109.46904 * 180.02562 * 21 20 19 36 36 H 1.09000 * 109.46736 * 299.99787 * 21 20 19 37 37 H 1.09004 * 109.46741 * 59.99865 * 22 21 20 38 38 H 1.09001 * 109.47034 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.47231 * 299.99826 * 23 22 21 40 40 H 1.08993 * 109.46630 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4400 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 8 2.1872 -5.9666 -0.0007 14 6 1.6742 -7.2070 -0.0008 15 8 0.4763 -7.3653 -0.0008 16 6 2.5922 -8.4022 -0.0010 17 6 1.7658 -9.6799 -0.1590 18 8 0.7988 -9.7547 0.8905 19 6 1.0502 -9.6607 -1.5113 20 6 0.2243 -10.9389 -1.6696 21 6 1.1492 -12.1557 -1.5992 22 6 1.8647 -12.1750 -0.2469 23 6 2.6906 -10.8968 -0.0887 24 1 -0.4850 0.8400 0.0004 25 1 0.3533 -2.3907 0.0002 26 1 0.6167 -4.9209 -0.8898 27 1 0.6174 -4.9205 0.8902 28 1 3.1414 -8.4387 0.9399 29 1 3.2958 -8.3197 -0.8294 30 1 1.1821 -9.7707 1.7780 31 1 1.7879 -9.6037 -2.3118 32 1 0.3918 -8.7935 -1.5616 33 1 -0.2851 -10.9253 -2.6331 34 1 -0.5132 -10.9963 -0.8691 35 1 0.5608 -13.0662 -1.7124 36 1 1.8867 -12.0982 -2.3997 37 1 1.1271 -12.2324 0.5536 38 1 2.5232 -13.0421 -0.1966 39 1 3.4282 -10.8393 -0.8891 40 1 3.1999 -10.9104 0.8749 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734198713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:30 Heat of formation + Delta-G solvation = -215.648085 kcal Electronic energy + Delta-G solvation = -22695.346209 eV Core-core repulsion = 19087.464562 eV Total energy + Delta-G solvation = -3607.881647 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83933 -40.42590 -39.73527 -37.37305 -36.04866 -35.95834 -33.44281 -32.86198 -31.66561 -30.24665 -28.31625 -26.50240 -23.69946 -23.17751 -21.57043 -21.40340 -20.69035 -20.08418 -18.73686 -17.98868 -17.78192 -17.40886 -16.81087 -16.52822 -16.21205 -16.06365 -15.69667 -15.45941 -15.18214 -14.65168 -14.49399 -14.07484 -13.74545 -13.59124 -13.51960 -13.16905 -12.99322 -12.91864 -12.75886 -12.50320 -12.48618 -12.12603 -11.96182 -11.85691 -11.64505 -11.58465 -11.48048 -11.30127 -10.93139 -10.61102 -10.48418 -10.13761 -8.53819 -6.04836 1.22069 1.35138 1.38826 1.47275 1.58361 1.85318 2.29211 3.03241 3.11600 3.38326 3.52254 3.70854 3.81092 3.91141 4.10638 4.13618 4.18410 4.20528 4.26241 4.44436 4.51124 4.60397 4.62537 4.68914 4.78586 4.94372 5.09219 5.15046 5.28480 5.31459 5.35019 5.38937 5.41123 5.52474 5.61615 5.87697 6.44688 6.76533 6.96317 7.01182 7.37989 7.91286 8.63358 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.050574 B = 0.002775 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.511518 B =10086.830047 C =10298.528795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.085 0.915 9 N -0.559 5.559 10 C 0.436 3.564 11 O -0.618 6.618 12 C 0.073 3.927 13 O -0.351 6.351 14 C 0.451 3.549 15 O -0.512 6.512 16 C -0.139 4.139 17 C 0.152 3.848 18 O -0.558 6.558 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.137 4.137 24 H 0.281 0.719 25 H 0.399 0.601 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.381 0.619 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 -23.105 -0.799 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.103 0.897 9 N -0.196 5.196 10 C 0.223 3.777 11 O -0.505 6.505 12 C -0.004 4.004 13 O -0.267 6.267 14 C 0.295 3.705 15 O -0.399 6.399 16 C -0.176 4.176 17 C 0.111 3.889 18 O -0.365 6.365 19 C -0.158 4.158 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.175 4.175 24 H 0.091 0.909 25 H 0.234 0.766 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.229 0.771 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.399 -22.968 -1.303 23.129 hybrid contribution -0.234 1.214 0.453 1.316 sum 2.165 -21.754 -0.850 21.878 Atomic orbital electron populations 1.69674 1.07021 1.29780 1.49161 1.26161 0.96595 1.02679 0.95604 0.84837 0.77896 0.76218 0.78841 1.19388 1.19390 1.19453 1.19734 0.92955 0.83368 1.50708 0.89717 1.41765 1.09545 1.04266 1.64015 1.20129 0.88086 0.85407 0.84065 1.90516 1.15423 1.87731 1.56810 1.22411 0.90269 0.82864 1.04857 1.86568 1.40848 1.15350 1.83914 1.24477 0.89484 0.84353 0.72201 1.90682 1.17686 1.86346 1.45220 1.22445 0.98187 0.88503 1.08498 1.21003 0.88021 0.91043 0.88862 1.86681 1.35806 1.96580 1.17384 1.21713 0.99958 0.99060 0.95040 1.21380 0.98172 0.94298 1.01033 1.21555 0.98627 0.97295 0.98059 1.21432 0.99055 0.97155 0.97397 1.22179 0.97697 0.93354 1.04238 0.90932 0.76633 0.88133 0.88043 0.84877 0.85254 0.77063 0.89784 0.93033 0.92261 0.93062 0.91615 0.91249 0.92282 0.90498 0.89487 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.17 13.05 21.67 0.28 -48.89 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 1.00 42.21 29.55 68.60 2.03 44.24 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.34 -19.20 9.68 84.04 0.81 -18.38 16 8 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 9 N -0.56 -29.16 5.29 -306.99 -1.62 -30.78 16 10 C 0.44 21.72 7.86 87.66 0.69 22.41 16 11 O -0.62 -35.54 16.08 15.72 0.25 -35.28 16 12 C 0.07 2.85 5.94 71.23 0.42 3.28 16 13 O -0.35 -13.00 9.75 -45.13 -0.44 -13.44 16 14 C 0.45 13.57 7.44 71.24 0.53 14.10 16 15 O -0.51 -17.65 12.96 28.60 0.37 -17.28 16 16 C -0.14 -2.64 5.05 29.85 0.15 -2.49 16 17 C 0.15 2.70 0.56 -10.79 -0.01 2.69 16 18 O -0.56 -11.84 10.19 -129.18 -1.32 -13.15 16 19 C -0.12 -2.52 4.66 30.59 0.14 -2.38 16 20 C -0.11 -2.11 5.78 30.60 0.18 -1.93 16 21 C -0.12 -1.62 5.92 30.60 0.18 -1.44 16 22 C -0.11 -1.37 5.78 30.59 0.18 -1.20 16 23 C -0.14 -1.56 4.92 30.60 0.15 -1.41 16 24 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 25 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 26 H 0.10 3.58 8.13 -2.38 -0.02 3.56 16 27 H 0.10 3.60 8.13 -2.39 -0.02 3.58 16 28 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.38 5.32 9.05 -74.06 -0.67 4.65 16 31 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.05 1.44 6.00 -2.39 -0.01 1.43 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.17 7.68 -2.39 -0.02 1.15 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.85 7.68 -2.38 -0.02 0.84 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -72.86 330.60 3.11 -69.74 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -0.34 Total: 31.64 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 3.90 Total: 13.20 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -1.34 Total: -79.67 kcal Atomic # 8 Polarization: -78.02 SS G_CDS: -1.13 Total: -79.16 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -72.86 3.11 -69.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734198713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.904 kcal (2) G-P(sol) polarization free energy of solvation -72.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds