Wall clock time and date at job start Tue Mar 31 2020 02:44:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46498 * 109.47196 * 2 1
4 4 C 1.46508 * 119.99990 * 270.00407 * 3 2 1
5 5 C 1.50700 * 109.47126 * 269.99916 * 4 3 2
6 6 H 1.08006 * 119.99812 * 359.97438 * 5 4 3
7 7 C 1.37870 * 119.99839 * 180.02562 * 5 4 3
8 8 N 1.31509 * 120.00389 * 359.97438 * 7 5 4
9 9 Si 1.86805 * 119.99955 * 179.97438 * 7 5 4
10 10 H 1.48499 * 109.46816 * 359.97438 * 9 7 5
11 11 H 1.48495 * 109.47107 * 119.99813 * 9 7 5
12 12 H 1.48502 * 109.47098 * 240.00104 * 9 7 5
13 13 C 1.34777 * 120.00104 * 89.99956 * 3 2 1
14 14 O 1.21280 * 120.00088 * 180.02562 * 13 3 2
15 15 C 1.50700 * 119.99831 * 0.02562 * 13 3 2
16 16 O 1.45198 * 109.46889 * 179.97438 * 15 13 3
17 17 C 1.34237 * 116.99946 * 179.97438 * 16 15 13
18 18 O 1.20824 * 119.99444 * 0.02562 * 17 16 15
19 19 C 1.50695 * 120.00103 * 179.97438 * 17 16 15
20 20 O 1.42906 * 112.84806 * 23.80617 * 19 17 16
21 21 C 1.53781 * 113.61376 * 155.00066 * 19 17 16
22 22 C 1.53781 * 87.08070 * 140.06669 * 21 19 17
23 23 C 1.53786 * 87.17350 * 334.52830 * 22 21 19
24 24 H 1.08997 * 109.46668 * 299.99576 * 1 2 3
25 25 H 1.08999 * 109.47272 * 59.99803 * 1 2 3
26 26 H 1.09000 * 109.46890 * 180.02562 * 1 2 3
27 27 H 1.09002 * 109.47109 * 240.00492 * 2 1 3
28 28 H 1.09000 * 109.47789 * 120.00270 * 2 1 3
29 29 H 1.09003 * 109.47103 * 29.99872 * 4 3 2
30 30 H 1.09002 * 109.46559 * 149.99579 * 4 3 2
31 31 H 0.97004 * 120.00572 * 180.02562 * 8 7 5
32 32 H 1.09008 * 109.47002 * 59.99953 * 15 13 3
33 33 H 1.08998 * 109.46948 * 299.99994 * 15 13 3
34 34 H 0.96701 * 114.00125 * 311.19351 * 20 19 17
35 35 H 1.08999 * 113.61181 * 25.51724 * 21 19 17
36 36 H 1.09000 * 113.69133 * 254.62552 * 21 19 17
37 37 H 1.09002 * 113.61445 * 89.11830 * 22 21 19
38 38 H 1.09002 * 113.61408 * 219.93560 * 22 21 19
39 39 H 1.08992 * 113.61675 * 140.02412 * 23 22 21
40 40 H 1.09000 * 113.60973 * 270.92699 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2625 2.0719 -1.2688
5 6 3.6857 1.8351 -1.7039
6 1 4.3428 1.2309 -1.0959
7 6 4.1492 2.3906 -2.8776
8 7 3.3492 3.1266 -3.6176
9 14 5.9136 2.0976 -3.4166
10 1 6.6013 1.2424 -2.4161
11 1 5.9215 1.4191 -4.7375
12 1 6.6208 3.3990 -3.5243
13 6 2.2430 2.0166 1.1672
14 8 2.6468 3.1601 1.1672
15 6 1.9923 1.3059 2.4723
16 8 2.3073 2.1954 3.5759
17 6 2.1363 1.7117 4.8163
18 8 1.7371 0.5823 4.9745
19 6 2.4433 2.5768 6.0114
20 8 2.3743 3.9736 5.7177
21 6 1.6695 2.1747 7.2780
22 6 2.9617 2.4577 8.0623
23 6 3.7257 2.1663 6.7598
24 1 -0.3632 0.5138 0.8900
25 1 -0.3634 0.5139 -0.8899
26 1 -0.3633 -1.0277 0.0005
27 1 1.8933 -0.5138 -0.8900
28 1 1.8935 -0.5139 0.8899
29 1 1.5816 1.6877 -2.0284
30 1 2.0954 3.1411 -1.1383
31 1 3.6752 3.5172 -4.4436
32 1 2.6229 0.4186 2.5298
33 1 0.9445 1.0114 2.5302
34 1 2.8592 4.2327 4.9221
35 1 1.3705 1.1266 7.2927
36 1 0.8517 2.8517 7.5251
37 1 3.0508 3.4906 8.3989
38 1 3.1584 1.7357 8.8548
39 1 4.5672 2.8373 6.5877
40 1 3.9878 1.1159 6.6332
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000740228969.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:44:13
Heat of formation + Delta-G solvation = -144.937919 kcal
Electronic energy + Delta-G solvation = -22978.815875 eV
Core-core repulsion = 19374.000450 eV
Total energy + Delta-G solvation = -3604.815425 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.145 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.15447 -39.41260 -38.53443 -36.54578 -35.36866 -34.82207 -32.87691 -30.22807
-29.42284 -27.13551 -26.19366 -26.03590 -23.13344 -22.80129 -21.71274 -19.92271
-18.95374 -18.42598 -17.18861 -16.82793 -16.43766 -16.23255 -15.91060 -15.49714
-15.29318 -14.65129 -14.48346 -13.99706 -13.61589 -13.46367 -13.08677 -12.93970
-12.67827 -12.49062 -12.16046 -12.10048 -11.84941 -11.66756 -11.42442 -11.27895
-11.24540 -10.98211 -10.91260 -10.68351 -10.60943 -10.58087 -10.18268 -10.03379
-9.68061 -9.05149 -8.48343 -7.79900 -6.09088 -4.14206 1.90745 2.30641
3.19304 3.27225 3.35157 3.39091 3.66288 3.77287 4.10545 4.18831
4.38051 4.40711 4.54154 4.81057 5.00137 5.13234 5.15136 5.25696
5.31373 5.32576 5.37058 5.54589 5.55027 5.59784 5.63741 5.69170
5.95570 5.98095 6.15252 6.22742 6.41126 6.95101 7.22671 7.35674
7.42846 7.57982 7.86788 8.16628 8.24764 8.79803 8.94885 9.51089
10.99094
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.021971 B = 0.003797 C = 0.003479
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1274.091894 B = 7371.640010 C = 8047.428649
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.101 3.899
3 N -0.591 5.591
4 C 0.248 3.752
5 C -0.529 4.529
6 H 0.058 0.942
7 C 0.062 3.938
8 N -0.893 5.893
9 Si 0.899 3.101
10 H -0.273 1.273
11 H -0.283 1.283
12 H -0.282 1.282
13 C 0.507 3.493
14 O -0.519 6.519
15 C 0.049 3.951
16 O -0.330 6.330
17 C 0.446 3.554
18 O -0.503 6.503
19 C 0.118 3.882
20 O -0.527 6.527
21 C -0.113 4.113
22 C -0.130 4.130
23 C -0.151 4.151
24 H 0.049 0.951
25 H 0.064 0.936
26 H 0.062 0.938
27 H 0.088 0.912
28 H 0.064 0.936
29 H 0.036 0.964
30 H 0.045 0.955
31 H 0.263 0.737
32 H 0.095 0.905
33 H 0.095 0.905
34 H 0.399 0.601
35 H 0.109 0.891
36 H 0.087 0.913
37 H 0.091 0.909
38 H 0.078 0.922
39 H 0.088 0.912
40 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.591 -5.451 18.625 19.736
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.023 4.023
3 N -0.325 5.325
4 C 0.129 3.871
5 C -0.568 4.568
6 H 0.077 0.923
7 C -0.141 4.141
8 N -0.532 5.532
9 Si 0.727 3.273
10 H -0.198 1.198
11 H -0.209 1.209
12 H -0.208 1.208
13 C 0.291 3.709
14 O -0.395 6.395
15 C -0.028 4.028
16 O -0.244 6.244
17 C 0.288 3.712
18 O -0.392 6.392
19 C 0.075 3.925
20 O -0.335 6.335
21 C -0.151 4.151
22 C -0.167 4.167
23 C -0.189 4.189
24 H 0.068 0.932
25 H 0.083 0.917
26 H 0.081 0.919
27 H 0.106 0.894
28 H 0.082 0.918
29 H 0.054 0.946
30 H 0.063 0.937
31 H 0.073 0.927
32 H 0.113 0.887
33 H 0.113 0.887
34 H 0.250 0.750
35 H 0.127 0.873
36 H 0.105 0.895
37 H 0.109 0.891
38 H 0.096 0.904
39 H 0.107 0.893
40 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -3.859 -5.052 18.957 19.994
hybrid contribution 1.202 -0.437 -1.156 1.724
sum -2.657 -5.488 17.800 18.816
Atomic orbital electron populations
1.22234 0.96489 1.01729 1.02438 1.21515 0.93790 0.83936 1.03028
1.48217 1.63720 1.13406 1.07143 1.19346 0.96516 0.93714 0.77523
1.21459 0.96825 1.32089 1.06392 0.92346 1.24932 0.97945 0.94834
0.96345 1.69936 1.35640 1.33329 1.14329 0.86428 0.84499 0.78093
0.78316 1.19809 1.20924 1.20818 1.19688 0.79752 0.87154 0.84266
1.90711 1.44603 1.17452 1.86739 1.23006 1.02767 0.92628 0.84407
1.86518 1.78166 1.45289 1.14455 1.24582 0.74190 0.87527 0.84890
1.90646 1.42132 1.19838 1.86537 1.22361 0.99911 0.81636 0.88630
1.86451 1.76950 1.19359 1.50727 1.23108 0.98141 1.03317 0.90490
1.22749 0.94997 1.02794 0.96190 1.23650 0.96175 1.03169 0.95916
0.93161 0.91732 0.91859 0.89359 0.91802 0.94604 0.93678 0.92689
0.88656 0.88688 0.75011 0.87284 0.89476 0.89072 0.90355 0.89331
0.88547
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16
2 C 0.10 1.58 5.93 -4.04 -0.02 1.56 16
3 N -0.59 -12.26 2.46 -175.05 -0.43 -12.69 16
4 C 0.25 6.34 5.16 -5.19 -0.03 6.31 16
5 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16
6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16
7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
8 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16
9 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16
10 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16
11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16
13 C 0.51 10.58 7.75 -10.99 -0.09 10.49 16
14 O -0.52 -13.10 16.08 -14.10 -0.23 -13.33 16
15 C 0.05 0.79 4.50 36.01 0.16 0.95 16
16 O -0.33 -5.35 9.08 -48.22 -0.44 -5.79 16
17 C 0.45 6.30 7.27 36.00 0.26 6.56 16
18 O -0.50 -7.67 15.82 -18.75 -0.30 -7.97 16
19 C 0.12 1.33 1.77 -90.82 -0.16 1.17 16
20 O -0.53 -6.21 13.35 -47.91 -0.64 -6.85 16
21 C -0.11 -1.06 7.37 -25.92 -0.19 -1.25 16
22 C -0.13 -0.99 8.01 -25.92 -0.21 -1.20 16
23 C -0.15 -1.36 7.48 -25.77 -0.19 -1.56 16
24 H 0.05 0.64 7.22 -51.93 -0.38 0.26 16
25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
27 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16
28 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16
29 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16
30 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16
31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
32 H 0.10 1.38 7.40 -51.92 -0.38 1.00 16
33 H 0.10 1.35 7.18 -51.93 -0.37 0.98 16
34 H 0.40 4.17 8.53 45.56 0.39 4.56 16
35 H 0.11 1.01 7.39 -51.93 -0.38 0.63 16
36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16
37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16
39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16
40 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16
LS Contribution 342.05 15.07 5.15 5.15
Total: -1.00 -33.83 342.05 -6.85 -40.68
By element:
Atomic # 1 Polarization: 7.13 SS G_CDS: -5.19 Total: 1.94 kcal
Atomic # 6 Polarization: 8.24 SS G_CDS: -0.50 Total: 7.74 kcal
Atomic # 7 Polarization: -38.47 SS G_CDS: 0.31 Total: -38.17 kcal
Atomic # 8 Polarization: -32.34 SS G_CDS: -1.60 Total: -33.94 kcal
Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -33.83 -6.85 -40.68 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000740228969.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -104.259 kcal
(2) G-P(sol) polarization free energy of solvation -33.826 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.086 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal
(6) G-S(sol) free energy of system = (1) + (5) -144.938 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds