Wall clock time and date at job start Tue Mar 31 2020 02:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47424 * 2 1 4 4 O 1.45203 * 109.47237 * 240.00544 * 2 1 3 5 5 C 1.34223 * 117.00154 * 89.99671 * 4 2 1 6 6 O 1.20822 * 120.00194 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99866 * 180.02562 * 5 4 2 8 8 H 1.08997 * 109.47463 * 55.00268 * 7 5 4 9 9 O 1.42903 * 109.47075 * 175.00002 * 7 5 4 10 10 C 1.52996 * 109.47245 * 294.99815 * 7 5 4 11 11 C 1.53002 * 117.49888 * 111.25511 * 10 7 5 12 12 C 1.53000 * 117.50107 * 179.91273 * 10 7 5 13 13 C 1.50703 * 109.47487 * 120.00214 * 2 1 3 14 14 O 1.21275 * 119.99819 * 120.00003 * 13 2 1 15 15 N 1.34774 * 119.99754 * 300.00408 * 13 2 1 16 16 C 1.46499 * 120.00254 * 359.97438 * 15 13 2 17 17 C 1.46497 * 119.99740 * 179.97438 * 15 13 2 18 18 C 1.50700 * 109.47245 * 89.99758 * 17 15 13 19 19 H 1.08003 * 119.99988 * 359.97438 * 18 17 15 20 20 C 1.37881 * 120.00076 * 179.97438 * 18 17 15 21 21 N 1.31506 * 119.99965 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99748 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47239 * 60.00036 * 22 20 18 24 24 H 1.48501 * 109.46950 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47451 * 299.99774 * 22 20 18 26 26 H 1.09007 * 109.46941 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46859 * 299.99580 * 1 2 3 28 28 H 1.08998 * 109.47262 * 59.99797 * 1 2 3 29 29 H 0.96703 * 114.00139 * 59.99884 * 9 7 5 30 30 H 1.09002 * 115.54951 * 325.58484 * 10 7 5 31 31 H 1.09000 * 117.49996 * 215.00804 * 11 10 7 32 32 H 1.08999 * 117.49664 * 0.02562 * 11 10 7 33 33 H 1.09008 * 117.49673 * 359.97438 * 12 10 7 34 34 H 1.08999 * 117.49942 * 144.97366 * 12 10 7 35 35 H 1.08997 * 109.47027 * 89.99862 * 16 15 13 36 36 H 1.08999 * 109.47349 * 210.00209 * 16 15 13 37 37 H 1.09003 * 109.47032 * 330.00213 * 16 15 13 38 38 H 1.09004 * 109.47391 * 209.99518 * 17 15 13 39 39 H 1.09000 * 109.47312 * 330.00116 * 17 15 13 40 40 H 0.97001 * 120.00096 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9972 1.2518 -2.2506 7 6 2.7182 -0.5770 -3.5495 8 1 2.0555 -1.3959 -3.8291 9 8 2.7427 0.3947 -4.5970 10 6 4.1311 -1.1188 -3.3234 11 6 4.3121 -2.6381 -3.3148 12 6 4.8182 -1.8133 -4.5009 13 6 2.0324 -0.7104 1.2304 14 8 2.7297 -1.6965 1.1190 15 7 1.7068 -0.2501 2.4545 16 6 0.8649 0.9413 2.5890 17 6 2.1947 -0.9410 3.6506 18 6 3.5224 -0.3581 4.0610 19 1 3.9593 0.4464 3.4879 20 6 4.1794 -0.8517 5.1682 21 7 3.6477 -1.8315 5.8657 22 14 5.8248 -0.1285 5.6772 23 1 5.6599 1.3174 5.9730 24 1 6.3195 -0.8290 6.8896 25 1 6.8035 -0.2995 4.5735 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 3.3138 1.1538 -4.4161 30 1 4.7567 -0.5336 -2.6495 31 1 5.0568 -3.0523 -2.6352 32 1 3.4247 -3.2515 -3.4707 33 1 4.2635 -1.8846 -5.4365 34 1 5.8959 -1.6846 -4.6018 35 1 -0.1832 0.6437 2.6222 36 1 1.1227 1.4665 3.5087 37 1 1.0287 1.6001 1.7362 38 1 1.4767 -0.8155 4.4611 39 1 2.3155 -2.0023 3.4333 40 1 4.1101 -2.1791 6.6444 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744986334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:46 Heat of formation + Delta-G solvation = -136.693540 kcal Electronic energy + Delta-G solvation = -23169.542731 eV Core-core repulsion = 19565.084810 eV Total energy + Delta-G solvation = -3604.457921 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.92608 -39.23661 -38.11426 -36.58375 -35.48467 -34.98069 -32.95571 -31.65668 -28.64775 -27.65503 -26.26219 -24.43195 -22.91431 -22.49108 -21.70715 -20.94831 -18.95795 -18.44695 -17.32397 -16.59267 -16.54258 -16.29150 -16.09705 -15.46553 -14.94476 -14.63145 -14.43218 -14.06032 -13.76782 -13.53039 -13.21447 -12.89798 -12.45856 -12.30867 -12.14657 -12.03920 -11.70131 -11.68121 -11.41625 -11.21153 -11.17204 -10.96214 -10.84258 -10.74246 -10.59762 -10.47955 -10.20291 -10.07558 -9.70321 -8.94112 -8.47687 -7.76498 -6.08877 -4.14073 1.99218 2.37308 3.22399 3.29395 3.33820 3.37600 3.39752 3.79957 4.06805 4.31309 4.40759 4.52248 4.66261 4.76059 4.83932 4.93362 4.98171 5.06005 5.23867 5.25735 5.47134 5.48122 5.61130 5.62916 5.74504 5.80499 5.87335 5.95940 5.96671 6.18766 6.34389 6.94449 7.09928 7.35405 7.42537 7.62423 7.86804 8.16745 8.25386 8.80833 8.95650 9.51040 10.99242 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.004320 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.616475 B = 6480.663691 C = 7339.661826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.068 3.932 3 H 0.105 0.895 4 O -0.318 6.318 5 C 0.436 3.564 6 O -0.506 6.506 7 C 0.155 3.845 8 H 0.137 0.863 9 O -0.529 6.529 10 C -0.197 4.197 11 C -0.156 4.156 12 C -0.161 4.161 13 C 0.509 3.491 14 O -0.518 6.518 15 N -0.595 5.595 16 C 0.076 3.924 17 C 0.247 3.753 18 C -0.530 4.530 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.276 1.276 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.387 0.613 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 3.405 -17.215 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.010 3.990 3 H 0.122 0.878 4 O -0.232 6.232 5 C 0.278 3.722 6 O -0.394 6.394 7 C 0.094 3.906 8 H 0.154 0.846 9 O -0.335 6.335 10 C -0.215 4.215 11 C -0.193 4.193 12 C -0.198 4.198 13 C 0.293 3.707 14 O -0.394 6.394 15 N -0.329 5.329 16 C -0.068 4.068 17 C 0.129 3.871 18 C -0.569 4.569 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.236 0.764 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.371 2.686 -17.311 18.055 hybrid contribution 1.221 1.088 0.862 1.848 sum -3.151 3.773 -16.449 17.168 Atomic orbital electron populations 1.22403 0.92397 1.04140 1.04327 1.22647 0.95749 0.97634 0.82999 0.87775 1.86631 1.75972 1.41298 1.19331 1.24753 0.74555 0.86485 0.86451 1.90657 1.48114 1.16579 1.84061 1.20961 0.95921 0.91159 0.82522 0.84587 1.86627 1.71670 1.35353 1.39859 1.22731 0.96383 0.97912 1.04508 1.23000 1.03872 0.91589 1.00826 1.22941 1.00630 1.03084 0.93144 1.19748 0.81742 0.85419 0.83796 1.90704 1.36880 1.25944 1.85844 1.48059 1.49847 1.28337 1.06669 1.21887 0.93982 0.88040 1.02918 1.19348 0.94356 0.93735 0.79701 1.21383 1.04884 1.19289 1.11365 0.92513 1.24921 0.97955 0.94899 0.96175 1.69914 1.39075 1.25919 1.18341 0.86549 0.83811 0.79072 0.77942 1.20205 1.21085 1.20192 0.90935 0.88819 0.91397 0.76410 0.87001 0.87832 0.88070 0.88103 0.88358 0.92983 0.90287 0.92332 0.94588 0.93631 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 9.18 37.16 0.34 -1.95 16 2 C 0.07 1.13 2.18 -27.88 -0.06 1.07 16 3 H 0.10 1.68 6.42 -51.93 -0.33 1.35 16 4 O -0.32 -5.25 9.41 -45.88 -0.43 -5.68 16 5 C 0.44 6.24 7.23 36.01 0.26 6.50 16 6 O -0.51 -8.05 15.54 -25.46 -0.40 -8.45 16 7 C 0.16 1.71 3.69 -27.88 -0.10 1.61 16 8 H 0.14 1.29 7.90 -51.93 -0.41 0.88 16 9 O -0.53 -5.58 12.90 -55.14 -0.71 -6.29 16 10 C -0.20 -2.08 5.34 -90.62 -0.48 -2.56 16 11 C -0.16 -1.55 10.18 -26.69 -0.27 -1.83 16 12 C -0.16 -1.37 10.16 -26.70 -0.27 -1.64 16 13 C 0.51 10.81 7.15 -10.99 -0.08 10.74 16 14 O -0.52 -13.30 16.08 -14.10 -0.23 -13.53 16 15 N -0.60 -12.50 2.86 -182.96 -0.52 -13.02 16 16 C 0.08 1.16 8.80 59.85 0.53 1.69 16 17 C 0.25 6.38 5.16 -5.20 -0.03 6.35 16 18 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 19 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 22 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 27 H 0.09 1.07 4.53 -51.93 -0.24 0.84 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.39 3.21 8.79 45.56 0.40 3.61 16 30 H 0.11 1.29 8.11 -51.93 -0.42 0.87 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.10 0.92 8.05 -51.93 -0.42 0.50 16 33 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 36 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 37 H 0.06 0.76 6.01 -51.93 -0.31 0.45 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 342.01 15.07 5.15 5.15 Total: -1.00 -34.50 342.01 -6.98 -41.48 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.97 Total: 2.77 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.59 Total: 6.42 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.21 Total: -38.56 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.77 Total: -33.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.50 -6.98 -41.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744986334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.218 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds