Wall clock time and date at job start Tue Mar 31 2020 02:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47424 * 2 1 4 4 O 1.45203 * 109.47237 * 240.00544 * 2 1 3 5 5 C 1.34223 * 117.00154 * 89.99671 * 4 2 1 6 6 O 1.20822 * 120.00194 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99866 * 180.02562 * 5 4 2 8 8 H 1.08997 * 109.47463 * 55.00268 * 7 5 4 9 9 O 1.42903 * 109.47075 * 175.00002 * 7 5 4 10 10 C 1.52996 * 109.47245 * 294.99815 * 7 5 4 11 11 C 1.53002 * 117.49888 * 111.25511 * 10 7 5 12 12 C 1.53000 * 117.50107 * 179.91273 * 10 7 5 13 13 C 1.50703 * 109.47487 * 120.00214 * 2 1 3 14 14 O 1.21275 * 119.99819 * 120.00003 * 13 2 1 15 15 N 1.34774 * 119.99754 * 300.00408 * 13 2 1 16 16 C 1.46499 * 120.00254 * 359.97438 * 15 13 2 17 17 C 1.46497 * 119.99740 * 179.97438 * 15 13 2 18 18 C 1.50700 * 109.47245 * 89.99758 * 17 15 13 19 19 H 1.08003 * 119.99988 * 359.97438 * 18 17 15 20 20 C 1.37881 * 120.00076 * 179.97438 * 18 17 15 21 21 N 1.31506 * 119.99965 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99748 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47239 * 60.00036 * 22 20 18 24 24 H 1.48501 * 109.46950 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47451 * 299.99774 * 22 20 18 26 26 H 1.09007 * 109.46941 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46859 * 299.99580 * 1 2 3 28 28 H 1.08998 * 109.47262 * 59.99797 * 1 2 3 29 29 H 0.96703 * 114.00139 * 59.99884 * 9 7 5 30 30 H 1.09002 * 115.54951 * 325.58484 * 10 7 5 31 31 H 1.09000 * 117.49996 * 215.00804 * 11 10 7 32 32 H 1.08999 * 117.49664 * 0.02562 * 11 10 7 33 33 H 1.09008 * 117.49673 * 359.97438 * 12 10 7 34 34 H 1.08999 * 117.49942 * 144.97366 * 12 10 7 35 35 H 1.08997 * 109.47027 * 89.99862 * 16 15 13 36 36 H 1.08999 * 109.47349 * 210.00209 * 16 15 13 37 37 H 1.09003 * 109.47032 * 330.00213 * 16 15 13 38 38 H 1.09004 * 109.47391 * 209.99518 * 17 15 13 39 39 H 1.09000 * 109.47312 * 330.00116 * 17 15 13 40 40 H 0.97001 * 120.00096 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9972 1.2518 -2.2506 7 6 2.7182 -0.5770 -3.5495 8 1 2.0555 -1.3959 -3.8291 9 8 2.7427 0.3947 -4.5970 10 6 4.1311 -1.1188 -3.3234 11 6 4.3121 -2.6381 -3.3148 12 6 4.8182 -1.8133 -4.5009 13 6 2.0324 -0.7104 1.2304 14 8 2.7297 -1.6965 1.1190 15 7 1.7068 -0.2501 2.4545 16 6 0.8649 0.9413 2.5890 17 6 2.1947 -0.9410 3.6506 18 6 3.5224 -0.3581 4.0610 19 1 3.9593 0.4464 3.4879 20 6 4.1794 -0.8517 5.1682 21 7 3.6477 -1.8315 5.8657 22 14 5.8248 -0.1285 5.6772 23 1 5.6599 1.3174 5.9730 24 1 6.3195 -0.8290 6.8896 25 1 6.8035 -0.2995 4.5735 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 3.3138 1.1538 -4.4161 30 1 4.7567 -0.5336 -2.6495 31 1 5.0568 -3.0523 -2.6352 32 1 3.4247 -3.2515 -3.4707 33 1 4.2635 -1.8846 -5.4365 34 1 5.8959 -1.6846 -4.6018 35 1 -0.1832 0.6437 2.6222 36 1 1.1227 1.4665 3.5087 37 1 1.0287 1.6001 1.7362 38 1 1.4767 -0.8155 4.4611 39 1 2.3155 -2.0023 3.4333 40 1 4.1101 -2.1791 6.6444 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744986334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:46 Heat of formation + Delta-G solvation = -159.957931 kcal Electronic energy + Delta-G solvation = -23170.551551 eV Core-core repulsion = 19565.084810 eV Total energy + Delta-G solvation = -3605.466741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.12610 -40.73506 -39.11450 -37.75233 -36.75026 -36.34804 -34.94487 -33.11142 -29.82186 -29.28824 -27.74192 -25.98384 -24.52749 -23.26029 -22.78428 -21.97987 -20.50525 -19.59002 -18.70882 -18.47253 -17.68158 -17.52953 -17.40621 -17.02651 -16.48605 -16.06566 -15.64337 -15.27896 -14.93938 -14.72420 -14.43059 -14.25787 -14.01881 -13.72843 -13.57335 -13.37979 -13.05360 -13.04461 -12.83460 -12.62813 -12.45321 -12.38576 -12.21607 -12.13074 -11.97513 -11.75484 -11.67254 -11.26468 -11.02438 -10.66343 -10.63227 -9.53824 -8.25209 -6.39957 0.86769 1.19858 1.35503 1.39275 1.46549 1.59631 2.26949 2.40438 2.62666 3.04860 3.24892 3.35880 3.39922 3.57058 3.72367 3.81362 3.87590 3.99907 4.17988 4.29197 4.43830 4.51088 4.58694 4.65024 4.80166 4.84344 4.93339 4.97921 5.07433 5.09806 5.16202 5.22457 5.25290 5.48919 5.75986 6.01645 6.28986 6.50854 6.60440 6.68363 7.18243 7.33982 8.81953 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.004320 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.616475 B = 6480.663691 C = 7339.661826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.077 3.923 3 H 0.112 0.888 4 O -0.335 6.335 5 C 0.435 3.565 6 O -0.523 6.523 7 C 0.166 3.834 8 H 0.155 0.845 9 O -0.530 6.530 10 C -0.211 4.211 11 C -0.169 4.169 12 C -0.135 4.135 13 C 0.500 3.500 14 O -0.576 6.576 15 N -0.599 5.599 16 C 0.067 3.933 17 C 0.261 3.739 18 C -0.549 4.549 19 H 0.051 0.949 20 C 0.012 3.988 21 N -0.925 5.925 22 Si 0.965 3.035 23 H -0.260 1.260 24 H -0.276 1.276 25 H -0.280 1.280 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.396 0.604 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.034 0.966 39 H 0.001 0.999 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.599 4.914 -18.540 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 H 0.130 0.870 4 O -0.250 6.250 5 C 0.278 3.722 6 O -0.412 6.412 7 C 0.105 3.895 8 H 0.172 0.828 9 O -0.337 6.337 10 C -0.230 4.230 11 C -0.206 4.206 12 C -0.172 4.172 13 C 0.287 3.713 14 O -0.456 6.456 15 N -0.331 5.331 16 C -0.074 4.074 17 C 0.140 3.860 18 C -0.587 4.587 19 H 0.070 0.930 20 C -0.188 4.188 21 N -0.565 5.565 22 Si 0.790 3.210 23 H -0.185 1.185 24 H -0.201 1.201 25 H -0.205 1.205 26 H 0.089 0.911 27 H 0.131 0.869 28 H 0.104 0.896 29 H 0.247 0.753 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.052 0.948 39 H 0.020 0.980 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.718 4.248 -18.647 19.698 hybrid contribution 1.305 0.618 1.254 1.912 sum -3.413 4.866 -17.393 18.381 Atomic orbital electron populations 1.22412 0.89253 1.04632 1.06115 1.22539 0.97880 0.96614 0.81112 0.87044 1.86644 1.76412 1.42157 1.19796 1.25494 0.73765 0.86342 0.86568 1.90637 1.48960 1.17273 1.84308 1.21032 0.96220 0.91357 0.80899 0.82799 1.86618 1.72018 1.35764 1.39322 1.22680 0.96293 0.98025 1.06016 1.23074 1.04281 0.91356 1.01886 1.23020 1.01236 1.00221 0.92705 1.20614 0.80726 0.84886 0.85117 1.90665 1.39456 1.28605 1.86827 1.48034 1.50147 1.29520 1.05421 1.22241 0.94786 0.86306 1.04078 1.18843 0.93937 0.91800 0.81445 1.21657 1.06033 1.19379 1.11634 0.93050 1.25808 1.01671 0.95172 0.96127 1.70025 1.40683 1.26971 1.18779 0.85503 0.78877 0.79138 0.77512 1.18468 1.20117 1.20535 0.91147 0.86940 0.89586 0.75348 0.88624 0.89007 0.87188 0.86622 0.87347 0.89551 0.90660 0.89459 0.94849 0.98041 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 9.18 71.98 0.66 -3.29 16 2 C 0.08 2.48 2.18 29.85 0.06 2.54 16 3 H 0.11 3.43 6.42 -2.39 -0.02 3.41 16 4 O -0.33 -10.94 9.41 -44.99 -0.42 -11.36 16 5 C 0.43 12.00 7.23 71.24 0.51 12.52 16 6 O -0.52 -15.85 15.54 28.40 0.44 -15.41 16 7 C 0.17 3.40 3.69 29.85 0.11 3.51 16 8 H 0.15 2.60 7.90 -2.39 -0.02 2.59 16 9 O -0.53 -10.06 12.90 -129.95 -1.68 -11.73 16 10 C -0.21 -4.30 5.34 -10.79 -0.06 -4.35 16 11 C -0.17 -3.27 10.18 30.62 0.31 -2.96 16 12 C -0.14 -2.03 10.16 30.62 0.31 -1.72 16 13 C 0.50 21.58 7.15 87.66 0.63 22.20 16 14 O -0.58 -30.91 16.08 15.78 0.25 -30.65 16 15 N -0.60 -25.27 2.86 -851.14 -2.43 -27.71 16 16 C 0.07 1.94 8.80 127.77 1.12 3.07 16 17 C 0.26 13.91 5.16 85.63 0.44 14.35 16 18 C -0.55 -31.53 9.39 25.60 0.24 -31.29 16 19 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 20 C 0.01 0.67 5.46 84.66 0.46 1.14 16 21 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 22 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 26 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.11 2.19 4.53 -2.39 -0.01 2.18 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.40 5.87 8.79 -74.06 -0.65 5.22 16 30 H 0.10 2.24 8.11 -2.39 -0.02 2.22 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.11 1.90 8.05 -2.39 -0.02 1.88 16 33 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.11 1.42 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.92 6.95 -2.39 -0.02 1.91 16 36 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 37 H 0.09 2.02 6.01 -2.39 -0.01 2.01 16 38 H 0.03 1.77 8.07 -2.38 -0.02 1.76 16 39 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 40 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -76.84 342.01 3.70 -73.14 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.41 Total: 16.43 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 4.81 Total: 15.71 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -2.15 Total: -82.82 kcal Atomic # 8 Polarization: -67.75 SS G_CDS: -1.40 Total: -69.16 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -76.84 3.70 -73.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744986334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.815 kcal (2) G-P(sol) polarization free energy of solvation -76.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds