Wall clock time and date at job start Tue Mar 31 2020 02:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99806 * 2 1 4 4 C 1.52997 * 109.46960 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47166 * 185.00646 * 4 3 2 6 6 C 1.50694 * 115.55254 * 80.31886 * 5 4 3 7 7 O 1.20822 * 120.00423 * 219.77523 * 6 5 4 8 8 O 1.34235 * 119.99945 * 39.78867 * 6 5 4 9 9 C 1.45197 * 116.99962 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46781 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00207 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99594 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99928 * 179.97438 * 12 10 9 14 14 C 1.50691 * 109.47146 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00309 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99779 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00081 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99915 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47391 * 89.99697 * 18 16 14 20 20 H 1.48502 * 109.47166 * 210.00230 * 18 16 14 21 21 H 1.48508 * 109.46979 * 330.00008 * 18 16 14 22 22 C 1.53008 * 117.49256 * 294.65506 * 5 4 3 23 23 C 1.53003 * 60.03202 * 252.49936 * 22 5 4 24 24 H 1.09004 * 109.47260 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47338 * 299.99703 * 1 2 3 26 26 H 1.09007 * 109.47497 * 59.99842 * 1 2 3 27 27 H 1.08998 * 109.46417 * 60.00391 * 3 2 1 28 28 H 1.08994 * 109.47151 * 300.00142 * 3 2 1 29 29 H 1.08997 * 109.47175 * 65.00185 * 4 3 2 30 30 H 1.09003 * 109.47227 * 304.99978 * 4 3 2 31 31 H 1.09003 * 109.46784 * 299.99197 * 9 8 6 32 32 H 1.08989 * 109.47607 * 59.99465 * 9 8 6 33 33 H 0.97000 * 120.00328 * 359.97438 * 12 10 9 34 34 H 1.09001 * 109.47147 * 299.99768 * 13 12 10 35 35 H 1.09003 * 109.47078 * 59.98890 * 13 12 10 36 36 H 0.97000 * 119.99916 * 179.97438 * 17 16 14 37 37 H 1.08994 * 117.50005 * 359.97438 * 22 5 4 38 38 H 1.08999 * 117.49333 * 145.00021 * 22 5 4 39 39 H 1.08995 * 117.50136 * 107.49949 * 23 22 5 40 40 H 1.09005 * 117.49984 * 252.53008 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1573 2.5769 0.1252 6 6 4.2040 3.1443 1.5205 7 8 3.9709 4.3154 1.7047 8 8 4.5047 2.3485 2.5589 9 6 4.5318 2.9631 3.8741 10 6 4.8856 1.9240 4.9068 11 8 5.0938 0.7784 4.5678 12 7 4.9695 2.2678 6.2073 13 6 5.3129 1.2577 7.2113 14 6 5.3412 1.8955 8.5763 15 1 5.1246 2.9479 8.6852 16 6 5.6425 1.1351 9.6864 17 7 5.9047 -0.1468 9.5540 18 14 5.6769 1.9256 11.3786 19 1 4.3277 1.8391 11.9929 20 1 6.6582 1.2149 12.2371 21 1 6.0721 3.3514 11.2509 22 6 3.9351 3.5568 -1.0288 23 6 5.3120 2.9235 -0.8182 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8629 0.7233 -0.9322 30 1 3.8514 0.5683 0.8409 31 1 5.2779 3.7577 3.8885 32 1 3.5511 3.3813 4.1001 33 1 4.8026 3.1840 6.4785 34 1 4.5672 0.4628 7.1967 35 1 6.2939 0.8396 6.9854 36 1 6.1170 -0.6815 10.3349 37 1 3.3463 3.2094 -1.8776 38 1 3.8229 4.6117 -0.7786 39 1 5.6285 2.1597 -1.5283 40 1 6.1053 3.5618 -0.4291 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773246644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:33 Heat of formation + Delta-G solvation = -149.770883 kcal Electronic energy + Delta-G solvation = -22128.430149 eV Core-core repulsion = 18523.405151 eV Total energy + Delta-G solvation = -3605.024998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.92624 -38.98354 -38.27215 -37.37808 -36.18235 -34.25183 -32.41612 -31.25796 -29.36171 -27.04992 -26.60996 -24.80571 -23.28243 -22.66498 -22.34739 -19.98146 -19.81550 -17.62587 -17.51275 -16.82428 -16.69476 -16.34846 -16.02635 -15.57367 -15.16435 -15.12791 -14.85554 -14.46584 -14.30728 -13.60360 -13.34066 -13.02327 -12.79969 -12.48375 -12.22759 -12.00841 -11.98650 -11.77411 -11.65712 -11.47557 -11.02228 -10.97800 -10.92745 -10.72787 -10.54365 -10.39436 -10.34774 -9.87524 -9.44650 -9.18107 -8.78726 -7.99271 -6.19973 -4.27473 1.93454 2.31156 3.16725 3.20651 3.22791 3.28981 3.31345 3.59755 3.91137 4.22005 4.31909 4.43806 4.55914 4.64765 4.87980 4.95145 5.07940 5.13068 5.15132 5.15993 5.20857 5.22207 5.26456 5.32900 5.40520 5.46332 5.50739 5.70929 5.74883 5.96361 6.29325 6.92880 7.22226 7.30201 7.45539 7.57349 7.65241 7.91560 8.49342 8.70675 8.95892 9.38890 10.90165 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.003007 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.235780 B = 9310.745399 C =10053.112298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.064 3.936 4 C -0.082 4.082 5 C -0.136 4.136 6 C 0.497 3.503 7 O -0.510 6.510 8 O -0.320 6.320 9 C 0.048 3.952 10 C 0.499 3.501 11 O -0.532 6.532 12 N -0.707 5.707 13 C 0.251 3.749 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.144 4.144 23 C -0.139 4.139 24 H 0.087 0.913 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.393 0.607 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 6.920 -21.624 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.012 4.012 4 C -0.119 4.119 5 C -0.138 4.138 6 C 0.340 3.660 7 O -0.398 6.398 8 O -0.234 6.234 9 C -0.030 4.030 10 C 0.282 3.718 11 O -0.409 6.409 12 N -0.357 5.357 13 C 0.131 3.869 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.180 4.180 23 C -0.176 4.176 24 H 0.105 0.895 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.225 0.775 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.500 6.067 -21.633 23.389 hybrid contribution -0.327 1.210 1.333 1.830 sum -6.826 7.277 -20.299 22.619 Atomic orbital electron populations 1.22748 0.80899 1.02878 0.99940 1.87880 1.19799 1.27686 1.95407 1.22476 0.93721 0.84815 1.00236 1.21021 0.92968 0.92704 1.05214 1.20856 1.08166 0.98293 0.86451 1.22451 0.72622 0.84345 0.86587 1.90655 1.45726 1.17689 1.85753 1.86554 1.79813 1.41688 1.15360 1.22902 1.04114 0.95970 0.79991 1.19863 0.79445 0.88846 0.83634 1.90717 1.49511 1.20134 1.80514 1.46364 1.68933 1.14575 1.05827 1.19177 0.96657 0.86766 0.84291 1.21205 1.49983 0.96099 0.91093 0.91780 1.24955 0.94654 0.94798 0.99579 1.69973 1.45683 1.05816 1.30684 0.86391 0.77991 0.79280 0.83106 1.20426 1.20963 1.19718 1.23187 0.99161 0.98906 0.96774 1.23198 0.91727 1.03210 0.99476 0.89480 0.93939 0.94208 0.93448 0.93155 0.89709 0.88388 0.88513 0.88550 0.77455 0.95242 0.95238 0.92357 0.87202 0.87073 0.86838 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.63 10.70 -35.23 -0.38 -5.01 16 3 C 0.06 0.67 5.77 37.16 0.21 0.88 16 4 C -0.08 -0.85 5.48 -26.73 -0.15 -1.00 16 5 C -0.14 -1.42 2.02 -155.62 -0.31 -1.73 16 6 C 0.50 6.92 7.44 36.00 0.27 7.18 16 7 O -0.51 -7.75 16.02 -18.75 -0.30 -8.05 16 8 O -0.32 -5.19 9.22 -45.92 -0.42 -5.61 16 9 C 0.05 0.74 5.94 36.01 0.21 0.95 16 10 C 0.50 10.12 7.91 -10.98 -0.09 10.03 16 11 O -0.53 -13.13 16.50 -14.10 -0.23 -13.36 16 12 N -0.71 -14.70 5.55 -61.47 -0.34 -15.04 16 13 C 0.25 6.60 5.43 -5.20 -0.03 6.57 16 14 C -0.55 -14.64 9.28 -34.44 -0.32 -14.96 16 15 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.88 -25.89 13.29 55.43 0.74 -25.15 16 18 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 C -0.14 -1.11 9.41 -26.73 -0.25 -1.36 16 23 C -0.14 -1.09 9.89 -26.69 -0.26 -1.36 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.42 7.85 -51.93 -0.41 0.01 16 29 H 0.08 0.72 7.95 -51.93 -0.41 0.31 16 30 H 0.10 1.27 7.69 -51.93 -0.40 0.87 16 31 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 32 H 0.10 1.30 8.13 -51.94 -0.42 0.88 16 33 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.11 0.62 8.01 -51.93 -0.42 0.20 16 38 H 0.11 0.94 7.68 -51.93 -0.40 0.54 16 39 H 0.11 0.67 8.08 -51.93 -0.42 0.25 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -34.07 351.92 -6.49 -40.56 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.13 Total: 2.42 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 0.30 Total: 8.26 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.40 Total: -40.19 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.33 Total: -32.03 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.07 -6.49 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773246644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.210 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds