Wall clock time and date at job start Tue Mar 31 2020 02:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99806 * 2 1 4 4 C 1.52997 * 109.46960 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47166 * 185.00646 * 4 3 2 6 6 C 1.50694 * 115.55254 * 80.31886 * 5 4 3 7 7 O 1.20822 * 120.00423 * 219.77523 * 6 5 4 8 8 O 1.34235 * 119.99945 * 39.78867 * 6 5 4 9 9 C 1.45197 * 116.99962 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46781 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00207 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99594 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99928 * 179.97438 * 12 10 9 14 14 C 1.50691 * 109.47146 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00309 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99779 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00081 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99915 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47391 * 89.99697 * 18 16 14 20 20 H 1.48502 * 109.47166 * 210.00230 * 18 16 14 21 21 H 1.48508 * 109.46979 * 330.00008 * 18 16 14 22 22 C 1.53008 * 117.49256 * 294.65506 * 5 4 3 23 23 C 1.53003 * 60.03202 * 252.49936 * 22 5 4 24 24 H 1.09004 * 109.47260 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47338 * 299.99703 * 1 2 3 26 26 H 1.09007 * 109.47497 * 59.99842 * 1 2 3 27 27 H 1.08998 * 109.46417 * 60.00391 * 3 2 1 28 28 H 1.08994 * 109.47151 * 300.00142 * 3 2 1 29 29 H 1.08997 * 109.47175 * 65.00185 * 4 3 2 30 30 H 1.09003 * 109.47227 * 304.99978 * 4 3 2 31 31 H 1.09003 * 109.46784 * 299.99197 * 9 8 6 32 32 H 1.08989 * 109.47607 * 59.99465 * 9 8 6 33 33 H 0.97000 * 120.00328 * 359.97438 * 12 10 9 34 34 H 1.09001 * 109.47147 * 299.99768 * 13 12 10 35 35 H 1.09003 * 109.47078 * 59.98890 * 13 12 10 36 36 H 0.97000 * 119.99916 * 179.97438 * 17 16 14 37 37 H 1.08994 * 117.50005 * 359.97438 * 22 5 4 38 38 H 1.08999 * 117.49333 * 145.00021 * 22 5 4 39 39 H 1.08995 * 117.50136 * 107.49949 * 23 22 5 40 40 H 1.09005 * 117.49984 * 252.53008 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1573 2.5769 0.1252 6 6 4.2040 3.1443 1.5205 7 8 3.9709 4.3154 1.7047 8 8 4.5047 2.3485 2.5589 9 6 4.5318 2.9631 3.8741 10 6 4.8856 1.9240 4.9068 11 8 5.0938 0.7784 4.5678 12 7 4.9695 2.2678 6.2073 13 6 5.3129 1.2577 7.2113 14 6 5.3412 1.8955 8.5763 15 1 5.1246 2.9479 8.6852 16 6 5.6425 1.1351 9.6864 17 7 5.9047 -0.1468 9.5540 18 14 5.6769 1.9256 11.3786 19 1 4.3277 1.8391 11.9929 20 1 6.6582 1.2149 12.2371 21 1 6.0721 3.3514 11.2509 22 6 3.9351 3.5568 -1.0288 23 6 5.3120 2.9235 -0.8182 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8629 0.7233 -0.9322 30 1 3.8514 0.5683 0.8409 31 1 5.2779 3.7577 3.8885 32 1 3.5511 3.3813 4.1001 33 1 4.8026 3.1840 6.4785 34 1 4.5672 0.4628 7.1967 35 1 6.2939 0.8396 6.9854 36 1 6.1170 -0.6815 10.3349 37 1 3.3463 3.2094 -1.8776 38 1 3.8229 4.6117 -0.7786 39 1 5.6285 2.1597 -1.5283 40 1 6.1053 3.5618 -0.4291 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773246644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:32 Heat of formation + Delta-G solvation = -173.344192 kcal Electronic energy + Delta-G solvation = -22129.452364 eV Core-core repulsion = 18523.405151 eV Total energy + Delta-G solvation = -3606.047213 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.01439 -40.54840 -39.22564 -38.29051 -37.29104 -36.21139 -34.43952 -32.01463 -30.93015 -28.72454 -27.48184 -25.84366 -24.56378 -23.95519 -23.20708 -21.69255 -20.87799 -19.20954 -18.61813 -18.03474 -17.89924 -17.42176 -17.19109 -17.00851 -16.76450 -16.22070 -16.07608 -15.92123 -15.32521 -14.86222 -14.50097 -14.38301 -14.14799 -13.97592 -13.70619 -13.34700 -13.11460 -12.95275 -12.72879 -12.63953 -12.33525 -12.24212 -12.21313 -11.97160 -11.77916 -11.51785 -11.44099 -11.14168 -10.93689 -10.83275 -10.65628 -9.96172 -8.30832 -6.47767 0.90758 1.17401 1.43731 1.45469 1.51332 1.57045 2.31558 2.48975 2.52579 2.88164 3.04356 3.46029 3.53578 3.70879 3.81056 3.89146 3.97680 3.99329 4.13332 4.21276 4.41292 4.50473 4.52397 4.69692 4.73342 4.83293 4.90570 4.94543 5.05152 5.10307 5.17448 5.19526 5.22059 5.39356 5.60787 5.80261 6.18703 6.50529 6.60974 6.75245 7.18308 7.33015 8.81390 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.003007 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.235780 B = 9310.745399 C =10053.112298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.063 3.937 4 C -0.075 4.075 5 C -0.161 4.161 6 C 0.495 3.505 7 O -0.525 6.525 8 O -0.343 6.343 9 C 0.059 3.941 10 C 0.499 3.501 11 O -0.582 6.582 12 N -0.698 5.698 13 C 0.267 3.733 14 C -0.558 4.558 15 H 0.086 0.914 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.986 3.014 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.255 1.255 22 C -0.123 4.123 23 C -0.129 4.129 24 H 0.095 0.905 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.412 0.588 34 H -0.008 1.008 35 H -0.007 1.007 36 H 0.269 0.731 37 H 0.138 0.862 38 H 0.105 0.895 39 H 0.138 0.862 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 9.240 -22.745 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.013 4.013 4 C -0.113 4.113 5 C -0.162 4.162 6 C 0.340 3.660 7 O -0.415 6.415 8 O -0.259 6.259 9 C -0.018 4.018 10 C 0.285 3.715 11 O -0.463 6.463 12 N -0.350 5.350 13 C 0.144 3.856 14 C -0.595 4.595 15 H 0.104 0.896 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.809 3.191 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.179 1.179 22 C -0.160 4.160 23 C -0.165 4.165 24 H 0.114 0.886 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.249 0.751 34 H 0.009 0.991 35 H 0.011 0.989 36 H 0.078 0.922 37 H 0.156 0.844 38 H 0.123 0.877 39 H 0.156 0.844 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.065 8.447 -22.776 25.299 hybrid contribution -0.173 0.463 1.597 1.672 sum -7.238 8.910 -21.179 24.090 Atomic orbital electron populations 1.22931 0.79490 1.03848 1.00823 1.87841 1.21530 1.28686 1.95578 1.22553 0.93649 0.84416 1.00682 1.20950 0.93121 0.92427 1.04785 1.20956 1.11191 0.98991 0.85044 1.23152 0.71658 0.84103 0.87089 1.90634 1.46594 1.18247 1.86004 1.86566 1.80400 1.42989 1.15907 1.22760 1.06175 0.94019 0.78851 1.20667 0.77678 0.89157 0.84015 1.90692 1.51500 1.22753 1.81315 1.46039 1.68854 1.14548 1.05516 1.18634 0.93543 0.87239 0.86155 1.21604 1.49668 0.97172 0.91088 0.89575 1.26068 0.93853 0.95205 1.04423 1.70134 1.46788 1.07754 1.32175 0.85139 0.78133 0.78834 0.77002 1.19624 1.20965 1.17872 1.23331 0.99158 0.97908 0.95587 1.23399 0.91450 1.03416 0.98259 0.88605 0.94240 0.92087 0.95189 0.90356 0.87430 0.91943 0.85751 0.86044 0.75116 0.99051 0.98949 0.92166 0.84387 0.87686 0.84424 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -9.74 10.70 -148.98 -1.59 -11.34 16 3 C 0.06 1.26 5.77 71.98 0.42 1.67 16 4 C -0.08 -1.52 5.48 30.59 0.17 -1.35 16 5 C -0.16 -3.10 2.02 -52.90 -0.11 -3.21 16 6 C 0.50 13.44 7.44 71.23 0.53 13.97 16 7 O -0.53 -15.30 16.02 21.98 0.35 -14.95 16 8 O -0.34 -11.20 9.22 -45.11 -0.42 -11.61 16 9 C 0.06 1.78 5.94 71.24 0.42 2.20 16 10 C 0.50 20.67 7.91 87.66 0.69 21.36 16 11 O -0.58 -30.21 16.50 15.78 0.26 -29.95 16 12 N -0.70 -29.43 5.55 -466.79 -2.59 -32.02 16 13 C 0.27 14.60 5.43 85.63 0.46 15.06 16 14 C -0.56 -30.07 9.28 25.60 0.24 -29.83 16 15 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.24 5.46 84.66 0.46 0.70 16 17 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 18 Si 0.99 42.05 29.54 68.60 2.03 44.07 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 22 C -0.12 -1.53 9.41 30.60 0.29 -1.24 16 23 C -0.13 -1.68 9.89 30.62 0.30 -1.38 16 24 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 1.09 7.85 -2.39 -0.02 1.07 16 29 H 0.11 1.61 7.95 -2.39 -0.02 1.59 16 30 H 0.06 1.70 7.69 -2.39 -0.02 1.68 16 31 H 0.12 3.11 8.13 -2.39 -0.02 3.09 16 32 H 0.12 3.10 8.13 -2.39 -0.02 3.08 16 33 H 0.41 13.98 8.32 -92.71 -0.77 13.21 16 34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.14 0.94 8.01 -2.39 -0.02 0.92 16 38 H 0.10 1.49 7.68 -2.39 -0.02 1.47 16 39 H 0.14 1.14 8.08 -2.39 -0.02 1.12 16 40 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -77.33 351.92 3.72 -73.61 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.27 Total: 18.23 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 5.13 Total: 19.62 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -2.30 Total: -87.67 kcal Atomic # 8 Polarization: -66.46 SS G_CDS: -1.40 Total: -67.86 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -77.33 3.72 -73.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773246644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.734 kcal (2) G-P(sol) polarization free energy of solvation -77.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds