Wall clock time and date at job start Tue Mar 31 2020 03:05:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08992 * 109.92134 * 2 1
4 4 C 1.47441 * 110.02056 * 121.26584 * 2 1 3
5 5 C 1.52677 * 113.58901 * 177.51796 * 4 2 1
6 6 O 1.39717 * 106.08009 * 271.60484 * 5 4 2
7 7 C 1.44959 * 115.12052 * 98.22706 * 6 5 4
8 8 C 1.54414 * 110.77357 * 320.84265 * 7 6 5
9 9 N 1.43757 * 115.48415 * 318.58430 * 8 7 6
10 10 C 1.34770 * 120.43020 * 267.75748 * 9 8 7
11 11 O 1.21587 * 120.00125 * 174.49123 * 10 9 8
12 12 N 1.34777 * 119.99980 * 354.49612 * 10 9 8
13 13 C 1.46497 * 119.99984 * 180.27594 * 12 10 9
14 14 C 1.50700 * 109.47138 * 179.72453 * 13 12 10
15 15 O 1.21295 * 119.99991 * 0.02562 * 14 13 12
16 16 N 1.34783 * 120.00014 * 179.97438 * 14 13 12
17 17 C 1.37092 * 119.99807 * 180.02562 * 16 14 13
18 18 H 1.07997 * 120.00135 * 359.97438 * 17 16 14
19 19 C 1.38952 * 120.00052 * 180.02562 * 17 16 14
20 20 N 1.31414 * 119.99540 * 359.97438 * 19 17 16
21 21 Si 1.86792 * 120.00398 * 180.02562 * 19 17 16
22 22 H 1.48500 * 109.47264 * 359.97438 * 21 19 17
23 23 H 1.48499 * 109.47740 * 119.99460 * 21 19 17
24 24 H 1.48504 * 109.47288 * 239.99820 * 21 19 17
25 25 H 1.09000 * 109.47528 * 189.00186 * 1 2 3
26 26 H 1.08994 * 109.47182 * 309.00498 * 1 2 3
27 27 H 1.09007 * 109.47270 * 69.00289 * 1 2 3
28 28 H 1.08994 * 108.75434 * 56.39257 * 4 2 1
29 29 H 1.09002 * 108.58482 * 298.51920 * 4 2 1
30 30 H 1.09000 * 110.12486 * 152.46575 * 5 4 2
31 31 H 1.09002 * 110.12327 * 30.74323 * 5 4 2
32 32 H 1.09009 * 109.21794 * 200.51074 * 7 6 5
33 33 H 1.09000 * 109.18266 * 81.15992 * 7 6 5
34 34 H 1.08992 * 108.28311 * 197.02319 * 8 7 6
35 35 H 1.09001 * 108.27646 * 80.14245 * 8 7 6
36 36 H 0.97003 * 120.00329 * 359.97438 * 12 10 9
37 37 H 1.09010 * 109.46970 * 299.72190 * 13 12 10
38 38 H 1.08998 * 109.47547 * 59.72477 * 13 12 10
39 39 H 0.96997 * 119.99880 * 0.02562 * 16 14 13
40 40 H 0.97002 * 119.99734 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9013 1.0247 0.0000
4 6 2.0347 -0.7190 1.1841
5 6 3.5573 -0.8203 1.2343
6 8 3.8909 -1.9834 0.5357
7 6 4.3017 -1.7790 -0.8393
8 6 3.4443 -0.6839 -1.5100
9 7 2.0394 -0.7268 -1.2081
10 6 1.1907 -1.4067 -2.0040
11 8 0.0221 -1.5223 -1.6886
12 7 1.6372 -1.9588 -3.1496
13 6 0.7133 -2.6928 -4.0178
14 6 1.4559 -3.1996 -5.2272
15 8 2.6406 -2.9707 -5.3514
16 7 0.8039 -3.9083 -6.1703
17 6 1.4796 -4.3698 -7.2702
18 1 2.5342 -4.1652 -7.3812
19 6 0.8074 -5.0999 -8.2428
20 7 -0.4759 -5.3483 -8.1079
21 14 1.7282 -5.7294 -9.7411
22 1 3.1527 -5.3187 -9.6555
23 1 1.6419 -7.2111 -9.7889
24 1 1.1220 -5.1584 -10.9707
25 1 -0.3634 -1.0150 0.1608
26 1 -0.3633 0.6468 0.7985
27 1 -0.3634 0.3683 -0.9595
28 1 1.6180 -1.7261 1.1866
29 1 1.6902 -0.2001 2.0786
30 1 3.8944 -0.8942 2.2682
31 1 4.0070 0.0482 0.7530
32 1 4.1870 -2.7124 -1.3906
33 1 5.3490 -1.4772 -0.8592
34 1 3.5647 -0.7689 -2.5899
35 1 3.8304 0.2882 -1.2033
36 1 2.5694 -1.8664 -3.4015
37 1 0.2924 -3.5361 -3.4701
38 1 -0.0904 -2.0291 -4.3368
39 1 -0.1433 -4.0916 -6.0708
40 1 -0.9452 -5.8583 -8.7867
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000807552349.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:05:26
Heat of formation + Delta-G solvation = -88.193585 kcal
Electronic energy + Delta-G solvation = -23343.760832 eV
Core-core repulsion = 19773.698777 eV
Total energy + Delta-G solvation = -3570.062054 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.80397 -38.81627 -38.07200 -35.67992 -34.80102 -34.05897 -32.99722 -31.36230
-29.24967 -28.91524 -27.27284 -24.54844 -24.32721 -22.73608 -21.39290 -19.76257
-19.45642 -18.15790 -17.75988 -17.06826 -16.29651 -16.03245 -15.58893 -15.38272
-15.21453 -14.59688 -14.50024 -14.30671 -13.94058 -13.48315 -13.46228 -13.27310
-12.63023 -12.33623 -12.23701 -11.93914 -11.88051 -11.69591 -11.61928 -11.59041
-11.28741 -11.14074 -10.68504 -10.40904 -10.32031 -9.69779 -9.64482 -9.24783
-8.84267 -8.62250 -8.46898 -8.09646 -6.51221 -3.93153 2.60605 3.10319
3.22552 3.29057 3.35482 3.70966 3.75768 3.98779 4.15543 4.54535
4.65164 4.65715 4.89250 4.90459 5.00892 5.10091 5.17102 5.17878
5.35630 5.44683 5.51533 5.58580 5.75415 5.76475 5.92096 5.99336
6.02220 6.09207 6.22354 6.35297 6.65218 6.83005 7.01468 7.17612
7.46417 7.92999 8.19234 8.45516 8.80922 9.05012 9.40031 9.87751
10.65765
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.031968 B = 0.003481 C = 0.003236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 875.661020 B = 8041.061211 C = 8651.231626
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.167 3.833
3 H 0.074 0.926
4 C -0.171 4.171
5 C 0.067 3.933
6 O -0.380 6.380
7 C 0.040 3.960
8 C 0.076 3.924
9 N -0.623 5.623
10 C 0.709 3.291
11 O -0.587 6.587
12 N -0.726 5.726
13 C 0.128 3.872
14 C 0.429 3.571
15 O -0.599 6.599
16 N -0.549 5.549
17 C -0.304 4.304
18 H 0.106 0.894
19 C 0.025 3.975
20 N -0.894 5.894
21 Si 0.932 3.068
22 H -0.267 1.267
23 H -0.280 1.280
24 H -0.280 1.280
25 H 0.082 0.918
26 H 0.043 0.957
27 H 0.067 0.933
28 H 0.081 0.919
29 H 0.075 0.925
30 H 0.084 0.916
31 H 0.054 0.946
32 H 0.094 0.906
33 H 0.068 0.932
34 H 0.086 0.914
35 H 0.075 0.925
36 H 0.404 0.596
37 H 0.082 0.918
38 H 0.081 0.919
39 H 0.396 0.604
40 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.371 10.604 15.986 19.921
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.066 3.934
3 H 0.092 0.908
4 C -0.209 4.209
5 C -0.011 4.011
6 O -0.299 6.299
7 C -0.038 4.038
8 C -0.050 4.050
9 N -0.361 5.361
10 C 0.411 3.589
11 O -0.465 6.465
12 N -0.385 5.385
13 C -0.001 4.001
14 C 0.215 3.785
15 O -0.486 6.486
16 N -0.184 5.184
17 C -0.434 4.434
18 H 0.124 0.876
19 C -0.177 4.177
20 N -0.534 5.534
21 Si 0.759 3.241
22 H -0.191 1.191
23 H -0.206 1.206
24 H -0.206 1.206
25 H 0.101 0.899
26 H 0.061 0.939
27 H 0.086 0.914
28 H 0.100 0.900
29 H 0.093 0.907
30 H 0.102 0.898
31 H 0.072 0.928
32 H 0.112 0.888
33 H 0.086 0.914
34 H 0.104 0.896
35 H 0.093 0.907
36 H 0.243 0.757
37 H 0.100 0.900
38 H 0.099 0.901
39 H 0.230 0.770
40 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 5.134 10.362 16.036 19.771
hybrid contribution 0.347 -0.185 -1.041 1.113
sum 5.481 10.177 14.995 18.933
Atomic orbital electron populations
1.22131 0.91980 1.03696 1.01514 1.20644 0.96362 0.93909 0.82526
0.90818 1.21768 0.97488 1.03180 0.98467 1.22009 0.93702 0.88629
0.96729 1.87685 1.87333 1.31171 1.23675 1.23858 0.96942 1.00522
0.82430 1.21662 0.82382 0.99608 1.01380 1.47248 1.05596 1.54835
1.28453 1.15828 0.84726 0.78406 0.79962 1.90920 1.16171 1.65183
1.74266 1.45064 1.14355 1.57627 1.21459 1.20778 0.91899 0.96658
0.90729 1.19775 0.88183 0.84947 0.85629 1.90480 1.15802 1.63033
1.79299 1.41793 1.11977 1.45938 1.18670 1.19773 0.95950 1.30678
0.96981 0.87644 1.25327 0.95741 0.97096 0.99582 1.69627 1.08186
1.39620 1.36017 0.85759 0.79595 0.78368 0.80368 1.19148 1.20609
1.20632 0.89950 0.93871 0.91377 0.90027 0.90700 0.89825 0.92785
0.88793 0.91375 0.89600 0.90662 0.75680 0.90026 0.90076 0.77016
0.91646
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.67 7.65 37.15 0.28 -1.38 16
2 C 0.17 1.82 3.20 -68.71 -0.22 1.60 16
3 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
4 C -0.17 -1.67 4.67 -29.58 -0.14 -1.81 16
5 C 0.07 0.60 6.46 36.99 0.24 0.84 16
6 O -0.38 -4.58 10.19 -32.16 -0.33 -4.90 16
7 C 0.04 0.42 7.28 37.90 0.28 0.70 16
8 C 0.08 0.79 4.92 -4.76 -0.02 0.77 16
9 N -0.62 -8.10 2.70 -173.41 -0.47 -8.57 16
10 C 0.71 11.77 8.09 -86.92 -0.70 11.07 16
11 O -0.59 -11.03 12.09 5.29 0.06 -10.97 16
12 N -0.73 -12.52 5.40 -66.42 -0.36 -12.88 16
13 C 0.13 2.41 6.15 -5.20 -0.03 2.37 16
14 C 0.43 9.86 7.85 -10.98 -0.09 9.78 16
15 O -0.60 -15.24 15.24 5.54 0.08 -15.16 16
16 N -0.55 -13.64 5.29 -10.96 -0.06 -13.69 16
17 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16
18 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16
19 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16
20 N -0.89 -23.91 13.05 55.50 0.72 -23.19 16
21 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16
22 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16
23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16
24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16
25 H 0.08 1.21 6.55 -51.93 -0.34 0.87 16
26 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16
27 H 0.07 0.97 6.99 -51.93 -0.36 0.61 16
28 H 0.08 1.03 7.89 -51.93 -0.41 0.62 16
29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.05 0.40 6.34 -51.93 -0.33 0.07 16
32 H 0.09 1.12 8.14 -51.92 -0.42 0.69 16
33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
34 H 0.09 0.94 6.03 -51.93 -0.31 0.63 16
35 H 0.08 0.61 7.07 -51.93 -0.37 0.24 16
36 H 0.40 6.81 5.08 -40.82 -0.21 6.60 16
37 H 0.08 1.50 8.14 -51.92 -0.42 1.07 16
38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16
39 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16
40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16
LS Contribution 320.75 15.07 4.83 4.83
Total: -1.00 -31.55 320.75 -6.72 -38.27
By element:
Atomic # 1 Polarization: 20.21 SS G_CDS: -5.54 Total: 14.66 kcal
Atomic # 6 Polarization: 16.74 SS G_CDS: -0.64 Total: 16.10 kcal
Atomic # 7 Polarization: -58.16 SS G_CDS: -0.16 Total: -58.32 kcal
Atomic # 8 Polarization: -30.85 SS G_CDS: -0.18 Total: -31.03 kcal
Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -31.55 -6.72 -38.27 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000807552349.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.923 kcal
(2) G-P(sol) polarization free energy of solvation -31.552 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.475 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.194 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds