Wall clock time and date at job start Tue Mar 31 2020 03:05:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08992 * 109.92134 * 2 1
4 4 C 1.47441 * 110.02056 * 121.26584 * 2 1 3
5 5 C 1.52677 * 113.58901 * 177.51796 * 4 2 1
6 6 O 1.39717 * 106.08009 * 271.60484 * 5 4 2
7 7 C 1.44959 * 115.12052 * 98.22706 * 6 5 4
8 8 C 1.54414 * 110.77357 * 320.84265 * 7 6 5
9 9 N 1.43757 * 115.48415 * 318.58430 * 8 7 6
10 10 C 1.34770 * 120.43020 * 267.75748 * 9 8 7
11 11 O 1.21587 * 120.00125 * 174.49123 * 10 9 8
12 12 N 1.34777 * 119.99980 * 354.49612 * 10 9 8
13 13 C 1.46497 * 119.99984 * 180.27594 * 12 10 9
14 14 C 1.50700 * 109.47138 * 179.72453 * 13 12 10
15 15 O 1.21295 * 119.99991 * 0.02562 * 14 13 12
16 16 N 1.34783 * 120.00014 * 179.97438 * 14 13 12
17 17 C 1.37092 * 119.99807 * 180.02562 * 16 14 13
18 18 H 1.07997 * 120.00135 * 359.97438 * 17 16 14
19 19 C 1.38952 * 120.00052 * 180.02562 * 17 16 14
20 20 N 1.31414 * 119.99540 * 359.97438 * 19 17 16
21 21 Si 1.86792 * 120.00398 * 180.02562 * 19 17 16
22 22 H 1.48500 * 109.47264 * 359.97438 * 21 19 17
23 23 H 1.48499 * 109.47740 * 119.99460 * 21 19 17
24 24 H 1.48504 * 109.47288 * 239.99820 * 21 19 17
25 25 H 1.09000 * 109.47528 * 189.00186 * 1 2 3
26 26 H 1.08994 * 109.47182 * 309.00498 * 1 2 3
27 27 H 1.09007 * 109.47270 * 69.00289 * 1 2 3
28 28 H 1.08994 * 108.75434 * 56.39257 * 4 2 1
29 29 H 1.09002 * 108.58482 * 298.51920 * 4 2 1
30 30 H 1.09000 * 110.12486 * 152.46575 * 5 4 2
31 31 H 1.09002 * 110.12327 * 30.74323 * 5 4 2
32 32 H 1.09009 * 109.21794 * 200.51074 * 7 6 5
33 33 H 1.09000 * 109.18266 * 81.15992 * 7 6 5
34 34 H 1.08992 * 108.28311 * 197.02319 * 8 7 6
35 35 H 1.09001 * 108.27646 * 80.14245 * 8 7 6
36 36 H 0.97003 * 120.00329 * 359.97438 * 12 10 9
37 37 H 1.09010 * 109.46970 * 299.72190 * 13 12 10
38 38 H 1.08998 * 109.47547 * 59.72477 * 13 12 10
39 39 H 0.96997 * 119.99880 * 0.02562 * 16 14 13
40 40 H 0.97002 * 119.99734 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9013 1.0247 0.0000
4 6 2.0347 -0.7190 1.1841
5 6 3.5573 -0.8203 1.2343
6 8 3.8909 -1.9834 0.5357
7 6 4.3017 -1.7790 -0.8393
8 6 3.4443 -0.6839 -1.5100
9 7 2.0394 -0.7268 -1.2081
10 6 1.1907 -1.4067 -2.0040
11 8 0.0221 -1.5223 -1.6886
12 7 1.6372 -1.9588 -3.1496
13 6 0.7133 -2.6928 -4.0178
14 6 1.4559 -3.1996 -5.2272
15 8 2.6406 -2.9707 -5.3514
16 7 0.8039 -3.9083 -6.1703
17 6 1.4796 -4.3698 -7.2702
18 1 2.5342 -4.1652 -7.3812
19 6 0.8074 -5.0999 -8.2428
20 7 -0.4759 -5.3483 -8.1079
21 14 1.7282 -5.7294 -9.7411
22 1 3.1527 -5.3187 -9.6555
23 1 1.6419 -7.2111 -9.7889
24 1 1.1220 -5.1584 -10.9707
25 1 -0.3634 -1.0150 0.1608
26 1 -0.3633 0.6468 0.7985
27 1 -0.3634 0.3683 -0.9595
28 1 1.6180 -1.7261 1.1866
29 1 1.6902 -0.2001 2.0786
30 1 3.8944 -0.8942 2.2682
31 1 4.0070 0.0482 0.7530
32 1 4.1870 -2.7124 -1.3906
33 1 5.3490 -1.4772 -0.8592
34 1 3.5647 -0.7689 -2.5899
35 1 3.8304 0.2882 -1.2033
36 1 2.5694 -1.8664 -3.4015
37 1 0.2924 -3.5361 -3.4701
38 1 -0.0904 -2.0291 -4.3368
39 1 -0.1433 -4.0916 -6.0708
40 1 -0.9452 -5.8583 -8.7867
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000807552349.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:05:25
Heat of formation + Delta-G solvation = -111.905068 kcal
Electronic energy + Delta-G solvation = -23344.789039 eV
Core-core repulsion = 19773.698777 eV
Total energy + Delta-G solvation = -3571.090262 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.90563 -40.32708 -39.43477 -36.76016 -36.23378 -35.74989 -34.17736 -33.35084
-30.23378 -29.84717 -28.80296 -26.40011 -25.17280 -23.79725 -22.25376 -21.32639
-20.95430 -20.05467 -18.92785 -18.06971 -17.53866 -17.21870 -16.97605 -16.62084
-16.43131 -16.18388 -15.99672 -15.72240 -15.25349 -14.97168 -14.64543 -14.13080
-13.98127 -13.71730 -13.55428 -13.42550 -13.19514 -12.95550 -12.90546 -12.56873
-12.44633 -12.38715 -12.12496 -12.10835 -11.58208 -11.44605 -10.57292 -10.53217
-10.45318 -10.20639 -10.08981 -9.54213 -8.51304 -6.01535 1.35028 1.41933
1.48371 1.58164 1.88832 2.10120 2.27623 2.76612 3.00435 3.15420
3.15985 3.76294 3.79501 3.85422 4.13013 4.19561 4.22158 4.37889
4.40222 4.43469 4.45265 4.55908 4.67248 4.72076 4.79898 4.88354
4.96391 5.15152 5.27393 5.34846 5.38210 5.46496 5.71196 5.86086
5.92164 6.41802 6.47485 6.93909 7.03104 7.41896 7.53636 7.93589
8.65920
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.031968 B = 0.003481 C = 0.003236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 875.661020 B = 8041.061211 C = 8651.231626
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.162 3.838
3 H 0.110 0.890
4 C -0.165 4.165
5 C 0.063 3.937
6 O -0.407 6.407
7 C 0.041 3.959
8 C 0.070 3.930
9 N -0.619 5.619
10 C 0.703 3.297
11 O -0.614 6.614
12 N -0.728 5.728
13 C 0.142 3.858
14 C 0.434 3.566
15 O -0.623 6.623
16 N -0.559 5.559
17 C -0.336 4.336
18 H 0.087 0.913
19 C -0.011 4.011
20 N -0.917 5.917
21 Si 0.998 3.002
22 H -0.269 1.269
23 H -0.272 1.272
24 H -0.271 1.271
25 H 0.050 0.950
26 H 0.072 0.928
27 H 0.043 0.957
28 H 0.045 0.955
29 H 0.103 0.897
30 H 0.102 0.898
31 H 0.078 0.922
32 H 0.069 0.931
33 H 0.097 0.903
34 H 0.079 0.921
35 H 0.111 0.889
36 H 0.406 0.594
37 H 0.087 0.913
38 H 0.091 0.909
39 H 0.398 0.602
40 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.476 11.962 16.829 21.639
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.062 3.938
3 H 0.127 0.873
4 C -0.203 4.203
5 C -0.013 4.013
6 O -0.326 6.326
7 C -0.036 4.036
8 C -0.055 4.055
9 N -0.356 5.356
10 C 0.405 3.595
11 O -0.495 6.495
12 N -0.388 5.388
13 C 0.013 3.987
14 C 0.221 3.779
15 O -0.512 6.512
16 N -0.194 5.194
17 C -0.466 4.466
18 H 0.105 0.895
19 C -0.212 4.212
20 N -0.557 5.557
21 Si 0.821 3.179
22 H -0.193 1.193
23 H -0.197 1.197
24 H -0.196 1.196
25 H 0.069 0.931
26 H 0.091 0.909
27 H 0.062 0.938
28 H 0.064 0.936
29 H 0.121 0.879
30 H 0.120 0.880
31 H 0.096 0.904
32 H 0.088 0.912
33 H 0.115 0.885
34 H 0.097 0.903
35 H 0.129 0.871
36 H 0.245 0.755
37 H 0.105 0.895
38 H 0.109 0.891
39 H 0.233 0.767
40 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 6.250 11.743 16.917 21.521
hybrid contribution -0.002 -0.558 -1.200 1.323
sum 6.248 11.185 15.718 20.278
Atomic orbital electron populations
1.21982 0.93310 1.02195 1.01179 1.20947 0.95400 0.95531 0.81916
0.87275 1.21702 0.98287 1.01247 0.99072 1.22229 0.92868 0.88558
0.97681 1.87664 1.87583 1.33171 1.24200 1.23875 0.98436 0.99462
0.81872 1.21866 0.80963 1.01481 1.01163 1.47415 1.06299 1.53694
1.28230 1.16045 0.84896 0.78605 0.80002 1.90917 1.17549 1.66254
1.74822 1.45024 1.14115 1.57912 1.21771 1.20550 0.91751 0.97148
0.89206 1.20394 0.87951 0.83562 0.86002 1.90454 1.17091 1.63590
1.80018 1.41837 1.12082 1.46645 1.18855 1.19782 0.95582 1.32554
0.98642 0.89505 1.26144 0.96546 0.96616 1.01861 1.69693 1.09180
1.39782 1.37011 0.84799 0.78153 0.78031 0.76918 1.19343 1.19680
1.19620 0.93115 0.90899 0.93787 0.93598 0.87910 0.88039 0.90409
0.91208 0.88510 0.90315 0.87061 0.75455 0.89493 0.89128 0.76748
0.91078
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.05 7.65 71.98 0.55 -2.50 16
2 C 0.16 3.15 3.20 42.59 0.14 3.29 16
3 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16
4 C -0.16 -2.85 4.67 28.75 0.13 -2.71 16
5 C 0.06 0.94 6.46 71.87 0.46 1.40 16
6 O -0.41 -9.14 10.19 -137.99 -1.41 -10.55 16
7 C 0.04 0.80 7.28 72.46 0.53 1.33 16
8 C 0.07 1.33 4.92 87.37 0.43 1.76 16
9 N -0.62 -15.32 2.70 -820.81 -2.21 -17.53 16
10 C 0.70 23.40 8.09 179.06 1.45 24.85 16
11 O -0.61 -23.59 12.09 -3.99 -0.05 -23.64 16
12 N -0.73 -25.36 5.40 -482.30 -2.61 -27.96 16
13 C 0.14 5.43 6.15 85.63 0.53 5.96 16
14 C 0.43 20.35 7.85 87.66 0.69 21.04 16
15 O -0.62 -32.32 15.24 -3.08 -0.05 -32.37 16
16 N -0.56 -28.39 5.29 -306.98 -1.62 -30.01 16
17 C -0.34 -18.62 9.68 84.04 0.81 -17.80 16
18 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16
19 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16
20 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16
21 Si 1.00 41.84 29.55 68.60 2.03 43.87 16
22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
23 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16
24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16
25 H 0.05 1.52 6.55 -2.39 -0.02 1.50 16
26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
27 H 0.04 1.24 6.99 -2.38 -0.02 1.23 16
28 H 0.05 1.14 7.89 -2.39 -0.02 1.12 16
29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16
30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16
31 H 0.08 0.79 6.34 -2.39 -0.02 0.78 16
32 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16
33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16
34 H 0.08 1.63 6.03 -2.39 -0.01 1.62 16
35 H 0.11 1.34 7.07 -2.39 -0.02 1.32 16
36 H 0.41 13.81 5.08 -92.71 -0.47 13.33 16
37 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16
38 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16
39 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16
40 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16
Total: -1.00 -69.51 320.75 0.43 -69.08
By element:
Atomic # 1 Polarization: 41.46 SS G_CDS: -0.13 Total: 41.34 kcal
Atomic # 6 Polarization: 30.31 SS G_CDS: 6.19 Total: 36.50 kcal
Atomic # 7 Polarization: -118.07 SS G_CDS: -6.16 Total: -124.22 kcal
Atomic # 8 Polarization: -65.05 SS G_CDS: -1.50 Total: -66.56 kcal
Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal
Total: -69.51 0.43 -69.08 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000807552349.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.827 kcal
(2) G-P(sol) polarization free energy of solvation -69.505 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.332 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.078 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.905 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds