Wall clock time and date at job start Tue Mar 31 2020 02:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99753 * 2 1 4 4 C 1.52997 * 109.47034 * 53.59736 * 3 2 1 5 5 C 1.50704 * 109.47109 * 293.59311 * 3 2 1 6 6 O 1.20824 * 119.99605 * 216.73367 * 5 3 2 7 7 O 1.34226 * 120.00006 * 36.73776 * 5 3 2 8 8 C 1.45195 * 117.00100 * 180.02562 * 7 5 3 9 9 C 1.50698 * 109.47437 * 179.97438 * 8 7 5 10 10 O 1.21284 * 119.99668 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00262 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00242 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47437 * 179.97438 * 12 11 9 14 14 H 1.07998 * 119.99595 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99954 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99446 * 180.02562 * 15 13 12 17 17 Si 1.86791 * 120.00078 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47290 * 89.99712 * 17 15 13 19 19 H 1.48497 * 109.47038 * 209.99857 * 17 15 13 20 20 H 1.48505 * 109.47313 * 329.99326 * 17 15 13 21 21 C 1.53001 * 109.46952 * 173.59519 * 3 2 1 22 22 C 1.53005 * 117.51889 * 345.69139 * 21 3 2 23 23 C 1.53000 * 117.49833 * 54.31933 * 21 3 2 24 24 H 1.08998 * 109.46772 * 188.61382 * 1 2 3 25 25 H 1.08997 * 109.47386 * 308.61026 * 1 2 3 26 26 H 1.09001 * 109.47276 * 68.61211 * 1 2 3 27 27 H 1.09002 * 109.47197 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.46901 * 299.99162 * 4 3 2 29 29 H 1.08995 * 109.47313 * 59.99893 * 4 3 2 30 30 H 1.09003 * 109.46695 * 299.99507 * 8 7 5 31 31 H 1.09006 * 109.47266 * 59.99478 * 8 7 5 32 32 H 0.97001 * 120.00257 * 0.02562 * 11 9 8 33 33 H 1.09001 * 109.47641 * 300.00852 * 12 11 9 34 34 H 1.09006 * 109.46684 * 60.00427 * 12 11 9 35 35 H 0.97000 * 119.99353 * 180.02562 * 16 15 13 36 36 H 1.08998 * 115.55001 * 199.99446 * 21 3 2 37 37 H 1.09000 * 117.50063 * 214.96971 * 22 21 3 38 38 H 1.08997 * 117.49507 * 359.97438 * 22 21 3 39 39 H 1.08996 * 117.49941 * 359.97438 * 23 21 3 40 40 H 1.09005 * 117.49618 * 144.99533 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4355 2.1195 1.1610 5 6 1.6950 1.9957 -1.3021 6 8 2.5164 2.7159 -1.8183 7 8 0.5017 1.8104 -1.8882 8 6 0.2675 2.5062 -3.1409 9 6 -1.1141 2.1794 -3.6464 10 8 -1.8305 1.4331 -3.0134 11 7 -1.5535 2.7164 -4.8017 12 6 -2.8963 2.3983 -5.2934 13 6 -3.1400 3.1215 -6.5929 14 1 -2.3713 3.7545 -7.0109 15 6 -4.3439 2.9743 -7.2486 16 7 -4.5563 3.6051 -8.3829 17 14 -5.6732 1.8789 -6.5259 18 1 -6.5431 2.6818 -5.6294 19 1 -6.4909 1.3030 -7.6235 20 1 -5.0423 0.7808 -5.7503 21 6 3.5272 1.1884 0.1609 22 6 4.0877 -0.1602 0.6174 23 6 4.2760 0.2958 -0.8309 24 1 -0.3633 -1.0161 0.1539 25 1 -0.3634 0.6413 0.8030 26 1 -0.3634 0.3748 -0.9569 27 1 1.8792 3.1152 1.1613 28 1 0.3548 2.2030 1.0463 29 1 1.6635 1.6203 2.1027 30 1 0.3512 3.5811 -2.9805 31 1 1.0073 2.1898 -3.8762 32 1 -0.9803 3.3130 -5.3082 33 1 -2.9793 1.3234 -5.4543 34 1 -3.6366 2.7137 -4.5581 35 1 -5.4034 3.5018 -8.8439 36 1 4.0338 2.0881 0.5102 37 1 4.9629 -0.1476 1.2669 38 1 3.3755 -0.9640 0.8036 39 1 3.6878 -0.2082 -1.5977 40 1 5.2752 0.6085 -1.1342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812658899.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:38 Heat of formation + Delta-G solvation = -154.705543 kcal Electronic energy + Delta-G solvation = -22954.415560 eV Core-core repulsion = 19349.176580 eV Total energy + Delta-G solvation = -3605.238981 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.21638 -40.64670 -39.55719 -37.91972 -36.90243 -36.21220 -34.47840 -32.46201 -31.13288 -28.94359 -28.16386 -25.67665 -24.21365 -23.41489 -23.03987 -21.76023 -20.98152 -19.45992 -19.16420 -18.37527 -17.95982 -17.49260 -17.19427 -16.83192 -16.66374 -16.12942 -15.98975 -15.60336 -15.07974 -14.89016 -14.69823 -14.46634 -14.22409 -14.05123 -13.81247 -13.40483 -13.11396 -13.09853 -12.71759 -12.59618 -12.38798 -12.13594 -11.96309 -11.94309 -11.74168 -11.68377 -11.29862 -11.21829 -10.95589 -10.93456 -10.67353 -10.06008 -8.41362 -6.49242 0.90412 1.11738 1.32984 1.35929 1.46821 1.49229 2.27081 2.35858 2.60199 2.88381 2.94081 3.34241 3.48266 3.63083 3.73294 3.99432 4.00264 4.06333 4.16206 4.30692 4.40539 4.56819 4.66077 4.68605 4.72626 4.81427 4.97342 4.98906 4.99658 5.09857 5.18783 5.20731 5.24934 5.34024 5.38369 5.90393 6.03915 6.45745 6.51154 6.69347 7.09213 7.24441 8.73337 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.034581 B = 0.003243 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.491575 B = 8631.802494 C = 9011.188759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.368 6.368 3 C 0.159 3.841 4 C -0.175 4.175 5 C 0.440 3.560 6 O -0.512 6.512 7 O -0.334 6.334 8 C 0.047 3.953 9 C 0.507 3.493 10 O -0.573 6.573 11 N -0.698 5.698 12 C 0.233 3.767 13 C -0.549 4.549 14 H 0.060 0.940 15 C 0.026 3.974 16 N -0.931 5.931 17 Si 0.938 3.062 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.151 4.151 22 C -0.138 4.138 23 C -0.180 4.180 24 H 0.100 0.900 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.412 0.588 33 H 0.017 0.983 34 H 0.018 0.982 35 H 0.273 0.727 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.155 -5.001 20.977 26.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.287 6.287 3 C 0.118 3.882 4 C -0.232 4.232 5 C 0.282 3.718 6 O -0.399 6.399 7 O -0.250 6.250 8 C -0.030 4.030 9 C 0.292 3.708 10 O -0.452 6.452 11 N -0.349 5.349 12 C 0.110 3.890 13 C -0.587 4.587 14 H 0.078 0.922 15 C -0.174 4.174 16 N -0.570 5.570 17 Si 0.762 3.238 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.168 4.168 22 C -0.175 4.175 23 C -0.217 4.217 24 H 0.118 0.882 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.248 0.752 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.139 0.861 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.833 -5.440 21.075 26.915 hybrid contribution -0.840 0.421 -0.946 1.334 sum 14.992 -5.019 20.128 25.595 Atomic orbital electron populations 1.23337 0.79058 1.04030 1.02406 1.87970 1.21655 1.24858 1.94197 1.21109 0.95011 0.84074 0.88010 1.22444 1.02223 1.01157 0.97336 1.25584 0.78988 0.79593 0.87590 1.90641 1.48273 1.37017 1.64004 1.86810 1.36577 1.65456 1.36166 1.22790 0.94524 0.99684 0.85970 1.20473 0.88546 0.80544 0.81204 1.90663 1.58758 1.37819 1.58009 1.45871 1.17930 1.48515 1.22591 1.19168 0.80720 0.95673 0.93418 1.21276 1.02074 1.29576 1.05798 0.92190 1.25613 1.00467 0.96549 0.94804 1.69984 1.26099 1.43682 1.17201 0.85843 0.79321 0.79942 0.78721 1.18864 1.19942 1.18211 1.22142 0.88633 0.98113 1.07961 1.23006 1.02771 0.95297 0.96418 1.22931 1.01765 1.03326 0.93702 0.88196 0.91575 0.92469 0.89518 0.90809 0.87472 0.86047 0.86633 0.75212 0.96481 0.96452 0.91797 0.84354 0.86116 0.88092 0.90725 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 10.15 113.37 1.15 1.30 16 2 O -0.37 -8.17 8.70 -136.29 -1.19 -9.35 16 3 C 0.16 3.24 0.90 -11.54 -0.01 3.23 16 4 C -0.17 -2.58 8.05 71.98 0.58 -2.00 16 5 C 0.44 11.48 6.62 71.24 0.47 11.96 16 6 O -0.51 -14.70 15.92 21.97 0.35 -14.35 16 7 O -0.33 -9.72 6.46 -42.76 -0.28 -10.00 16 8 C 0.05 1.31 5.94 71.24 0.42 1.73 16 9 C 0.51 18.51 7.91 87.66 0.69 19.21 16 10 O -0.57 -25.14 16.50 15.76 0.26 -24.88 16 11 N -0.70 -26.96 5.55 -466.78 -2.59 -29.55 16 12 C 0.23 11.12 4.50 85.63 0.38 11.51 16 13 C -0.55 -29.78 9.83 25.60 0.25 -29.53 16 14 H 0.06 3.42 7.84 -2.91 -0.02 3.39 16 15 C 0.03 1.46 5.47 84.66 0.46 1.92 16 16 N -0.93 -55.12 13.96 21.45 0.30 -54.82 16 17 Si 0.94 43.21 27.47 68.60 1.88 45.10 16 18 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.26 -11.69 6.54 99.48 0.65 -11.04 16 21 C -0.15 -2.58 4.46 -10.79 -0.05 -2.63 16 22 C -0.14 -1.96 9.89 30.60 0.30 -1.66 16 23 C -0.18 -3.28 9.81 30.59 0.30 -2.98 16 24 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.07 1.20 5.85 -2.39 -0.01 1.18 16 26 H 0.06 1.64 5.37 -2.39 -0.01 1.63 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.16 6.29 -2.39 -0.02 1.14 16 29 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.12 2.84 8.13 -2.39 -0.02 2.82 16 31 H 0.12 2.85 8.13 -2.38 -0.02 2.83 16 32 H 0.41 13.75 8.32 -92.71 -0.77 12.98 16 33 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 34 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 35 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 1.60 7.15 -2.39 -0.02 1.59 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -69.26 336.00 3.93 -65.32 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.23 Total: 20.46 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 4.96 Total: 12.06 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -2.29 Total: -84.37 kcal Atomic # 8 Polarization: -57.72 SS G_CDS: -0.85 Total: -58.58 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.10 kcal Total: -69.26 3.93 -65.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812658899.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.382 kcal (2) G-P(sol) polarization free energy of solvation -69.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds