Wall clock time and date at job start Tue Mar 31 2020 02:43:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46498 * 109.47601 * 2 1
4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1
5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2
6 6 H 1.08995 * 110.97082 * 92.66028 * 5 4 3
7 7 C 1.50696 * 110.97001 * 216.38605 * 5 4 3
8 8 O 1.20831 * 119.99915 * 0.02562 * 7 5 4
9 9 O 1.34229 * 120.00146 * 179.97438 * 7 5 4
10 10 C 1.45206 * 117.00155 * 180.02562 * 9 7 5
11 11 C 1.52998 * 109.46783 * 180.02562 * 10 9 7
12 12 O 1.42896 * 109.47076 * 65.00345 * 11 10 9
13 13 C 1.42904 * 114.00089 * 179.97438 * 12 11 10
14 14 C 1.50701 * 109.47382 * 179.97438 * 13 12 11
15 15 H 1.07998 * 119.99786 * 0.02562 * 14 13 12
16 16 C 1.37871 * 120.00029 * 180.02562 * 14 13 12
17 17 N 1.31512 * 120.00454 * 180.02562 * 16 14 13
18 18 Si 1.86803 * 120.00162 * 0.02562 * 16 14 13
19 19 H 1.48500 * 109.47232 * 89.99782 * 18 16 14
20 20 H 1.48499 * 109.47384 * 210.00012 * 18 16 14
21 21 H 1.48506 * 109.46914 * 330.00123 * 18 16 14
22 22 C 1.54631 * 101.76472 * 334.54015 * 5 4 3
23 23 C 1.34621 * 124.47196 * 270.02849 * 3 2 1
24 24 O 1.21286 * 124.90539 * 359.55259 * 23 3 2
25 25 H 1.08994 * 109.46756 * 299.99998 * 1 2 3
26 26 H 1.08998 * 109.46730 * 59.99602 * 1 2 3
27 27 H 1.08999 * 109.46773 * 180.02562 * 1 2 3
28 28 H 1.09002 * 109.47341 * 240.00121 * 2 1 3
29 29 H 1.08998 * 109.47560 * 120.00001 * 2 1 3
30 30 H 1.09002 * 110.24468 * 78.03845 * 4 3 2
31 31 H 1.09002 * 110.24463 * 316.12602 * 4 3 2
32 32 H 1.08999 * 109.46758 * 300.00219 * 10 9 7
33 33 H 1.08995 * 109.46777 * 60.00265 * 10 9 7
34 34 H 1.09003 * 109.46852 * 184.99523 * 11 10 9
35 35 H 1.08990 * 109.47221 * 304.99715 * 11 10 9
36 36 H 1.08997 * 109.47062 * 300.00027 * 13 12 11
37 37 H 1.09006 * 109.46878 * 59.99837 * 13 12 11
38 38 H 0.96998 * 120.00571 * 180.02562 * 17 16 14
39 39 H 1.09000 * 110.48694 * 143.47575 * 22 5 4
40 40 H 1.08995 * 110.48768 * 265.98840 * 22 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2945 2.1619 1.2117
5 6 2.3518 3.6353 0.7510
6 1 1.3766 4.1124 0.8475
7 6 3.4011 4.3993 1.5167
8 8 4.0597 3.8400 2.3613
9 8 3.6048 5.7009 1.2596
10 6 4.6320 6.3732 2.0351
11 6 4.7180 7.8390 1.6053
12 8 3.4978 8.5049 1.9366
13 6 3.4736 9.8874 1.5760
14 6 2.1476 10.4860 1.9689
15 1 1.3984 9.8722 2.4466
16 6 1.8909 11.8173 1.7184
17 7 0.7339 12.3398 2.0617
18 14 3.1864 12.8789 0.8914
19 1 3.0056 12.8232 -0.5815
20 1 3.0457 14.2827 1.3546
21 1 4.5381 12.3746 1.2435
22 6 2.7499 3.4854 -0.7357
23 6 2.2720 2.0997 -1.1098
24 8 2.1363 1.6946 -2.2449
25 1 -0.3632 0.5138 0.8900
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 1.8934 -0.5138 -0.8900
29 1 1.8934 -0.5138 0.8899
30 1 3.2503 1.8640 1.6428
31 1 1.4942 2.0251 1.9391
32 1 4.3809 6.3196 3.0944
33 1 5.5925 5.8871 1.8643
34 1 5.5472 8.3214 2.1230
35 1 4.8808 7.8931 0.5290
36 1 4.2770 10.4120 2.0932
37 1 3.6108 9.9844 0.4989
38 1 0.5531 13.2763 1.8852
39 1 2.2481 4.2389 -1.3428
40 1 3.8311 3.5622 -0.8507
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000815187253.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:43:58
Heat of formation + Delta-G solvation = -165.632684 kcal
Electronic energy + Delta-G solvation = -22164.154320 eV
Core-core repulsion = 18558.441503 eV
Total energy + Delta-G solvation = -3605.712817 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.145 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.25971 -40.02372 -37.43978 -36.71433 -36.16798 -34.33821 -32.73894 -30.72634
-29.92628 -28.12360 -27.64315 -24.87599 -23.36114 -22.29931 -21.90678 -20.70152
-19.70494 -18.11875 -17.31484 -17.17398 -16.77370 -16.52461 -16.01249 -15.44593
-15.22481 -14.88285 -14.45997 -14.38342 -14.11182 -13.95512 -13.64567 -13.40031
-13.01305 -12.71183 -12.61851 -12.51084 -12.31094 -11.94546 -11.81908 -11.69260
-11.45277 -11.22926 -10.93844 -10.75450 -10.61440 -10.59502 -10.07790 -9.91550
-9.25551 -9.09551 -8.96378 -8.55653 -6.15974 -4.15714 1.98283 2.26311
2.33611 2.73923 3.21482 3.28607 3.28961 3.82889 3.97274 4.30946
4.36665 4.43353 4.46793 4.66220 4.79192 4.82407 4.99985 5.03657
5.09938 5.15156 5.18429 5.28601 5.34219 5.40106 5.49766 5.51573
5.61073 5.71118 5.81066 5.87300 6.16141 6.37495 6.50460 6.71932
6.91708 7.52730 7.59197 7.82630 7.89763 8.58332 8.94832 9.42565
10.96975
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.024487 B = 0.002888 C = 0.002785
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1143.208388 B = 9691.655769 C =10052.028140
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.123 3.877
3 N -0.621 5.621
4 C 0.114 3.886
5 C -0.098 4.098
6 H 0.134 0.866
7 C 0.476 3.524
8 O -0.509 6.509
9 O -0.334 6.334
10 C 0.074 3.926
11 C 0.057 3.943
12 O -0.376 6.376
13 C 0.169 3.831
14 C -0.521 4.521
15 H 0.083 0.917
16 C 0.073 3.927
17 N -0.894 5.894
18 Si 0.876 3.124
19 H -0.273 1.273
20 H -0.282 1.282
21 H -0.266 1.266
22 C -0.142 4.142
23 C 0.522 3.478
24 O -0.526 6.526
25 H 0.059 0.941
26 H 0.060 0.940
27 H 0.068 0.932
28 H 0.083 0.917
29 H 0.081 0.919
30 H 0.093 0.907
31 H 0.090 0.910
32 H 0.081 0.919
33 H 0.081 0.919
34 H 0.065 0.935
35 H 0.052 0.948
36 H 0.004 0.996
37 H 0.001 0.999
38 H 0.267 0.733
39 H 0.121 0.879
40 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.312 -22.255 -2.504 23.017
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.001 3.999
3 N -0.356 5.356
4 C -0.009 4.009
5 C -0.118 4.118
6 H 0.152 0.848
7 C 0.318 3.682
8 O -0.398 6.398
9 O -0.250 6.250
10 C 0.001 3.999
11 C -0.021 4.021
12 O -0.295 6.295
13 C 0.094 3.906
14 C -0.559 4.559
15 H 0.101 0.899
16 C -0.129 4.129
17 N -0.532 5.532
18 Si 0.703 3.297
19 H -0.199 1.199
20 H -0.207 1.207
21 H -0.191 1.191
22 C -0.182 4.182
23 C 0.309 3.691
24 O -0.402 6.402
25 H 0.078 0.922
26 H 0.079 0.921
27 H 0.087 0.913
28 H 0.101 0.899
29 H 0.099 0.901
30 H 0.111 0.889
31 H 0.108 0.892
32 H 0.099 0.901
33 H 0.099 0.901
34 H 0.083 0.917
35 H 0.071 0.929
36 H 0.022 0.978
37 H 0.019 0.981
38 H 0.077 0.923
39 H 0.139 0.861
40 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 5.164 -22.593 -2.754 23.338
hybrid contribution 0.877 0.927 -0.286 1.307
sum 6.041 -21.666 -3.040 22.697
Atomic orbital electron populations
1.22176 0.95540 1.02496 1.02742 1.21365 0.94520 0.80664 1.03327
1.48410 1.66134 1.14080 1.07000 1.22024 1.03821 0.87708 0.87311
1.21872 0.99592 0.95218 0.95106 0.84839 1.22937 0.82599 0.81450
0.81192 1.90665 1.47094 1.69722 1.32350 1.86598 1.55162 1.22847
1.60344 1.23248 0.89134 0.91374 0.96192 1.22405 0.90130 0.89777
0.99797 1.87971 1.33415 1.25300 1.82816 1.20640 0.98402 0.77656
0.93950 1.20865 0.99157 0.95364 1.40478 0.89923 1.24767 0.95515
0.97351 0.95308 1.69867 1.22338 1.13868 1.47175 0.86847 0.82400
0.80174 0.80290 1.19853 1.20745 1.19117 1.22321 1.04643 0.96706
0.94520 1.20817 0.76405 0.87405 0.84445 1.90741 1.53173 1.75414
1.20914 0.92197 0.92076 0.91299 0.89857 0.90109 0.88883 0.89181
0.90104 0.90121 0.91697 0.92937 0.97820 0.98126 0.92288 0.86107
0.87184
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.12 10.24 37.16 0.38 -0.74 16
2 C 0.12 0.87 6.66 -4.04 -0.03 0.85 16
3 N -0.62 -5.53 2.94 -172.35 -0.51 -6.04 16
4 C 0.11 0.90 6.70 -3.12 -0.02 0.88 16
5 C -0.10 -0.89 3.65 -90.14 -0.33 -1.22 16
6 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16
7 C 0.48 5.78 7.19 36.00 0.26 6.04 16
8 O -0.51 -6.98 15.25 -18.75 -0.29 -7.27 16
9 O -0.33 -4.78 10.19 -42.02 -0.43 -5.21 16
10 C 0.07 1.02 5.85 37.16 0.22 1.23 16
11 C 0.06 0.91 6.33 37.16 0.24 1.14 16
12 O -0.38 -8.39 10.30 -38.80 -0.40 -8.79 16
13 C 0.17 4.14 4.76 36.01 0.17 4.32 16
14 C -0.52 -15.21 9.99 -34.44 -0.34 -15.55 16
15 H 0.08 2.65 8.06 -52.49 -0.42 2.22 16
16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16
17 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16
18 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16
19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
21 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16
22 C -0.14 -1.31 6.41 -26.74 -0.17 -1.48 16
23 C 0.52 5.84 8.03 -10.77 -0.09 5.75 16
24 O -0.53 -7.83 17.60 5.55 0.10 -7.73 16
25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16
28 H 0.08 0.66 7.93 -51.93 -0.41 0.24 16
29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.09 0.79 6.96 -51.93 -0.36 0.42 16
31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16
33 H 0.08 0.89 8.13 -51.93 -0.42 0.46 16
34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16
36 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16
37 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16
38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16
39 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16
40 H 0.11 0.95 7.89 -51.93 -0.41 0.54 16
LS Contribution 343.21 15.07 5.17 5.17
Total: -1.00 -35.08 343.21 -6.25 -41.33
By element:
Atomic # 1 Polarization: 1.70 SS G_CDS: -6.19 Total: -4.49 kcal
Atomic # 6 Polarization: 3.03 SS G_CDS: 0.19 Total: 3.21 kcal
Atomic # 7 Polarization: -32.76 SS G_CDS: 0.27 Total: -32.49 kcal
Atomic # 8 Polarization: -27.98 SS G_CDS: -1.02 Total: -29.00 kcal
Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal
Total LS contribution 5.17 Total: 5.17 kcal
Total: -35.08 -6.25 -41.33 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815187253.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -124.300 kcal
(2) G-P(sol) polarization free energy of solvation -35.084 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.383 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal
(6) G-S(sol) free energy of system = (1) + (5) -165.633 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds