Wall clock time and date at job start Tue Mar 31 2020 02:43:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46498 * 109.47601 * 2 1
4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1
5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2
6 6 H 1.08995 * 110.97082 * 92.66028 * 5 4 3
7 7 C 1.50696 * 110.97001 * 216.38605 * 5 4 3
8 8 O 1.20831 * 119.99915 * 0.02562 * 7 5 4
9 9 O 1.34229 * 120.00146 * 179.97438 * 7 5 4
10 10 C 1.45206 * 117.00155 * 180.02562 * 9 7 5
11 11 C 1.52998 * 109.46783 * 180.02562 * 10 9 7
12 12 O 1.42896 * 109.47076 * 65.00345 * 11 10 9
13 13 C 1.42904 * 114.00089 * 179.97438 * 12 11 10
14 14 C 1.50701 * 109.47382 * 179.97438 * 13 12 11
15 15 H 1.07998 * 119.99786 * 0.02562 * 14 13 12
16 16 C 1.37871 * 120.00029 * 180.02562 * 14 13 12
17 17 N 1.31512 * 120.00454 * 180.02562 * 16 14 13
18 18 Si 1.86803 * 120.00162 * 0.02562 * 16 14 13
19 19 H 1.48500 * 109.47232 * 89.99782 * 18 16 14
20 20 H 1.48499 * 109.47384 * 210.00012 * 18 16 14
21 21 H 1.48506 * 109.46914 * 330.00123 * 18 16 14
22 22 C 1.54631 * 101.76472 * 334.54015 * 5 4 3
23 23 C 1.34621 * 124.47196 * 270.02849 * 3 2 1
24 24 O 1.21286 * 124.90539 * 359.55259 * 23 3 2
25 25 H 1.08994 * 109.46756 * 299.99998 * 1 2 3
26 26 H 1.08998 * 109.46730 * 59.99602 * 1 2 3
27 27 H 1.08999 * 109.46773 * 180.02562 * 1 2 3
28 28 H 1.09002 * 109.47341 * 240.00121 * 2 1 3
29 29 H 1.08998 * 109.47560 * 120.00001 * 2 1 3
30 30 H 1.09002 * 110.24468 * 78.03845 * 4 3 2
31 31 H 1.09002 * 110.24463 * 316.12602 * 4 3 2
32 32 H 1.08999 * 109.46758 * 300.00219 * 10 9 7
33 33 H 1.08995 * 109.46777 * 60.00265 * 10 9 7
34 34 H 1.09003 * 109.46852 * 184.99523 * 11 10 9
35 35 H 1.08990 * 109.47221 * 304.99715 * 11 10 9
36 36 H 1.08997 * 109.47062 * 300.00027 * 13 12 11
37 37 H 1.09006 * 109.46878 * 59.99837 * 13 12 11
38 38 H 0.96998 * 120.00571 * 180.02562 * 17 16 14
39 39 H 1.09000 * 110.48694 * 143.47575 * 22 5 4
40 40 H 1.08995 * 110.48768 * 265.98840 * 22 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2945 2.1619 1.2117
5 6 2.3518 3.6353 0.7510
6 1 1.3766 4.1124 0.8475
7 6 3.4011 4.3993 1.5167
8 8 4.0597 3.8400 2.3613
9 8 3.6048 5.7009 1.2596
10 6 4.6320 6.3732 2.0351
11 6 4.7180 7.8390 1.6053
12 8 3.4978 8.5049 1.9366
13 6 3.4736 9.8874 1.5760
14 6 2.1476 10.4860 1.9689
15 1 1.3984 9.8722 2.4466
16 6 1.8909 11.8173 1.7184
17 7 0.7339 12.3398 2.0617
18 14 3.1864 12.8789 0.8914
19 1 3.0056 12.8232 -0.5815
20 1 3.0457 14.2827 1.3546
21 1 4.5381 12.3746 1.2435
22 6 2.7499 3.4854 -0.7357
23 6 2.2720 2.0997 -1.1098
24 8 2.1363 1.6946 -2.2449
25 1 -0.3632 0.5138 0.8900
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 1.8934 -0.5138 -0.8900
29 1 1.8934 -0.5138 0.8899
30 1 3.2503 1.8640 1.6428
31 1 1.4942 2.0251 1.9391
32 1 4.3809 6.3196 3.0944
33 1 5.5925 5.8871 1.8643
34 1 5.5472 8.3214 2.1230
35 1 4.8808 7.8931 0.5290
36 1 4.2770 10.4120 2.0932
37 1 3.6108 9.9844 0.4989
38 1 0.5531 13.2763 1.8852
39 1 2.2481 4.2389 -1.3428
40 1 3.8311 3.5622 -0.8507
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000815187253.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:43:58
Heat of formation + Delta-G solvation = -189.672643 kcal
Electronic energy + Delta-G solvation = -22165.196771 eV
Core-core repulsion = 18558.441503 eV
Total energy + Delta-G solvation = -3606.755268 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.145 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-42.14222 -40.96347 -38.84057 -37.81394 -37.24348 -35.03439 -34.86457 -31.94583
-30.81705 -29.54363 -28.86118 -25.70899 -24.12958 -23.95997 -23.33621 -21.62154
-20.48883 -19.09434 -19.03207 -18.16809 -17.93709 -17.70561 -16.99240 -16.79704
-16.44464 -16.33082 -15.92826 -15.11730 -15.05692 -14.76561 -14.69054 -14.59071
-14.25657 -14.14553 -13.76961 -13.37128 -13.33523 -12.99144 -12.89633 -12.69911
-12.59743 -12.51689 -12.23972 -12.02270 -11.85359 -11.71309 -11.63633 -11.33530
-10.98649 -10.91789 -10.38513 -9.83690 -8.35940 -6.44204 1.02899 1.35869
1.38878 1.40259 1.46281 1.49347 1.98326 2.30984 2.96742 2.97808
3.06323 3.22452 3.58519 3.71184 3.94837 4.02176 4.10743 4.15928
4.22456 4.41288 4.45545 4.50169 4.51623 4.52666 4.59974 4.70428
4.75595 4.78710 4.84211 4.93622 5.02047 5.27260 5.37753 5.44495
5.49737 5.92646 5.95697 6.59068 6.61361 6.73001 6.99742 7.20194
8.81190
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.024487 B = 0.002888 C = 0.002785
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1143.208388 B = 9691.655769 C =10052.028140
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.116 3.884
3 N -0.616 5.616
4 C 0.119 3.881
5 C -0.092 4.092
6 H 0.146 0.854
7 C 0.479 3.521
8 O -0.525 6.525
9 O -0.353 6.353
10 C 0.074 3.926
11 C 0.048 3.952
12 O -0.406 6.406
13 C 0.178 3.822
14 C -0.547 4.547
15 H 0.029 0.971
16 C 0.011 3.989
17 N -0.944 5.944
18 Si 0.956 3.044
19 H -0.260 1.260
20 H -0.276 1.276
21 H -0.241 1.241
22 C -0.137 4.137
23 C 0.516 3.484
24 O -0.571 6.571
25 H 0.066 0.934
26 H 0.037 0.963
27 H 0.086 0.914
28 H 0.072 0.928
29 H 0.108 0.892
30 H 0.092 0.908
31 H 0.113 0.887
32 H 0.072 0.928
33 H 0.113 0.887
34 H 0.090 0.910
35 H 0.066 0.934
36 H 0.018 0.982
37 H 0.015 0.985
38 H 0.273 0.727
39 H 0.124 0.876
40 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.299 -22.482 -2.698 23.790
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C -0.005 4.005
3 N -0.349 5.349
4 C -0.004 4.004
5 C -0.112 4.112
6 H 0.164 0.836
7 C 0.323 3.677
8 O -0.415 6.415
9 O -0.269 6.269
10 C 0.001 3.999
11 C -0.029 4.029
12 O -0.326 6.326
13 C 0.103 3.897
14 C -0.585 4.585
15 H 0.048 0.952
16 C -0.186 4.186
17 N -0.583 5.583
18 Si 0.777 3.223
19 H -0.185 1.185
20 H -0.201 1.201
21 H -0.164 1.164
22 C -0.177 4.177
23 C 0.304 3.696
24 O -0.451 6.451
25 H 0.085 0.915
26 H 0.056 0.944
27 H 0.104 0.896
28 H 0.091 0.909
29 H 0.126 0.874
30 H 0.110 0.890
31 H 0.131 0.869
32 H 0.090 0.910
33 H 0.131 0.869
34 H 0.108 0.892
35 H 0.084 0.916
36 H 0.036 0.964
37 H 0.032 0.968
38 H 0.082 0.918
39 H 0.142 0.858
40 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 7.157 -22.860 -2.909 24.131
hybrid contribution 0.199 0.876 -0.137 0.909
sum 7.356 -21.984 -3.046 23.381
Atomic orbital electron populations
1.22133 0.94989 1.03422 1.01877 1.21572 0.94959 0.79796 1.04139
1.48547 1.64951 1.14678 1.06723 1.22097 1.04689 0.86559 0.87045
1.21915 0.99083 0.95680 0.94492 0.83629 1.23359 0.82643 0.80743
0.80995 1.90657 1.47831 1.69788 1.33178 1.86592 1.55613 1.23990
1.60678 1.23281 0.90593 0.90456 0.95589 1.22779 0.88395 0.90575
1.01136 1.87912 1.37087 1.24273 1.83309 1.20353 0.95791 0.79028
0.94534 1.21181 1.00597 0.95809 1.40864 0.95239 1.25865 0.98236
0.98834 0.95711 1.70032 1.25018 1.14690 1.48561 0.85598 0.79742
0.77636 0.79298 1.18474 1.20117 1.16382 1.22296 1.05071 0.95746
0.94587 1.21107 0.76038 0.88187 0.84255 1.90713 1.55352 1.76404
1.22646 0.91480 0.94389 0.89558 0.90934 0.87405 0.88957 0.86917
0.90978 0.86876 0.89230 0.91555 0.96431 0.96778 0.91825 0.85752
0.86515
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.97 10.24 71.98 0.74 -1.23 16
2 C 0.12 1.49 6.66 86.38 0.58 2.07 16
3 N -0.62 -10.21 2.94 -817.66 -2.40 -12.61 16
4 C 0.12 1.63 6.70 86.83 0.58 2.21 16
5 C -0.09 -1.54 3.65 -10.48 -0.04 -1.57 16
6 H 0.15 2.10 8.14 -2.39 -0.02 2.09 16
7 C 0.48 10.93 7.19 71.23 0.51 11.44 16
8 O -0.52 -13.52 15.25 21.95 0.33 -13.19 16
9 O -0.35 -9.63 10.19 -48.76 -0.50 -10.12 16
10 C 0.07 1.89 5.85 71.98 0.42 2.31 16
11 C 0.05 1.42 6.33 71.98 0.46 1.87 16
12 O -0.41 -17.86 10.30 -145.57 -1.50 -19.36 16
13 C 0.18 8.55 4.76 71.24 0.34 8.89 16
14 C -0.55 -32.65 9.99 25.60 0.26 -32.40 16
15 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16
16 C 0.01 0.66 5.47 84.65 0.46 1.12 16
17 N -0.94 -58.78 13.96 21.44 0.30 -58.48 16
18 Si 0.96 42.13 27.47 68.60 1.88 44.02 16
19 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16
20 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16
21 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16
22 C -0.14 -2.41 6.41 30.59 0.20 -2.21 16
23 C 0.52 11.37 8.03 87.87 0.71 12.08 16
24 O -0.57 -17.36 17.60 -3.05 -0.05 -17.42 16
25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16
26 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16
27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16
28 H 0.07 1.11 7.93 -2.39 -0.02 1.09 16
29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16
30 H 0.09 1.36 6.96 -2.39 -0.02 1.35 16
31 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16
32 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16
33 H 0.11 2.15 8.13 -2.39 -0.02 2.13 16
34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16
35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16
36 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16
37 H 0.01 0.65 7.57 -2.38 -0.02 0.63 16
38 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16
39 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16
40 H 0.12 1.89 7.89 -2.39 -0.02 1.87 16
Total: -1.00 -78.40 343.21 4.24 -74.16
By element:
Atomic # 1 Polarization: 7.44 SS G_CDS: 0.97 Total: 8.41 kcal
Atomic # 6 Polarization: -0.61 SS G_CDS: 5.20 Total: 4.59 kcal
Atomic # 7 Polarization: -68.98 SS G_CDS: -2.10 Total: -71.09 kcal
Atomic # 8 Polarization: -58.37 SS G_CDS: -1.71 Total: -60.09 kcal
Atomic # 14 Polarization: 42.13 SS G_CDS: 1.88 Total: 44.02 kcal
Total: -78.40 4.24 -74.16 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815187253.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -115.508 kcal
(2) G-P(sol) polarization free energy of solvation -78.401 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.909 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.165 kcal
(6) G-S(sol) free energy of system = (1) + (5) -189.673 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds